Wall clock time and date at job start Tue Mar 31 2020 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.53002 * 109.46891 * 120.00036 * 2 1 3 5 5 C 1.52996 * 109.46891 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47368 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47592 * 59.99743 * 5 4 2 8 8 O 1.21279 * 120.00190 * 240.00518 * 7 5 4 9 9 N 1.34774 * 119.99762 * 59.99789 * 7 5 4 10 10 C 1.46500 * 119.99881 * 180.02562 * 9 7 5 11 11 C 1.53008 * 109.46913 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46800 * 180.02562 * 11 10 9 13 13 N 1.46505 * 109.47089 * 180.02562 * 12 11 10 14 14 C 1.36934 * 119.99721 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00529 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99555 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99955 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00104 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46804 * 60.00024 * 18 16 14 20 20 H 1.48490 * 109.47326 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47262 * 300.00564 * 18 16 14 22 22 C 1.53000 * 109.47328 * 299.99597 * 5 4 2 23 23 C 1.52997 * 109.47060 * 60.00126 * 22 5 4 24 24 H 1.08998 * 109.47533 * 59.99948 * 23 22 5 25 25 C 1.52992 * 109.47482 * 180.02562 * 23 22 5 26 26 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 27 27 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 28 28 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 29 29 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47056 * 59.99654 * 4 2 1 31 31 H 1.09004 * 109.47006 * 299.99770 * 4 2 1 32 32 H 0.97004 * 120.00087 * 359.97438 * 9 7 5 33 33 H 1.08992 * 109.47610 * 300.00012 * 10 9 7 34 34 H 1.09004 * 109.46923 * 60.00433 * 10 9 7 35 35 H 1.09002 * 109.47288 * 299.99937 * 11 10 9 36 36 H 1.08992 * 109.46889 * 60.00023 * 11 10 9 37 37 H 1.09002 * 109.47067 * 299.99973 * 12 11 10 38 38 H 1.09000 * 109.47312 * 60.00000 * 12 11 10 39 39 H 0.97000 * 119.99611 * 359.97438 * 13 12 11 40 40 H 0.97001 * 119.99771 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47398 * 180.02562 * 22 5 4 42 42 H 1.09001 * 109.47194 * 300.00476 * 22 5 4 43 43 H 1.09001 * 109.47066 * 60.00169 * 25 23 22 44 44 H 1.08996 * 109.47747 * 179.97438 * 25 23 22 45 45 H 1.09002 * 109.47103 * 300.00247 * 25 23 22 46 46 H 1.09001 * 109.47375 * 300.00370 * 26 2 1 47 47 H 1.09000 * 109.47140 * 60.00388 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7218 1.2489 6 1 3.9333 -1.2353 2.1392 7 6 4.0729 0.6988 1.2486 8 8 4.7700 1.0950 0.3387 9 7 3.7478 1.5289 2.2593 10 6 4.2363 2.9101 2.2587 11 6 3.7263 3.6320 3.5077 12 6 4.2359 5.0746 3.5067 13 7 3.7482 5.7656 4.7029 14 6 4.0793 7.0767 4.9190 15 1 4.7003 7.6012 4.2079 16 6 3.6167 7.7316 6.0522 17 7 2.8603 7.0922 6.9191 18 14 4.0688 9.5198 6.3475 19 1 3.5661 10.3496 5.2232 20 1 3.4548 9.9823 7.6179 21 1 5.5455 9.6489 6.4362 22 6 4.0794 -1.4435 -0.0002 23 6 3.5695 -0.7224 -1.2495 24 1 3.9331 0.3052 -1.2498 25 6 4.0784 -1.4443 -2.4987 26 6 2.0399 -0.7213 -1.2492 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6765 -1.7488 1.2493 31 1 1.6766 -0.2074 2.1393 32 1 3.1898 1.2122 2.9868 33 1 5.3262 2.9101 2.2582 34 1 3.8725 3.4237 1.3687 35 1 2.6363 3.6321 3.5077 36 1 4.0896 3.1185 4.3978 37 1 5.3260 5.0749 3.5064 38 1 3.8723 5.5878 2.6165 39 1 3.1908 5.2944 5.3418 40 1 2.5367 7.5500 7.7108 41 1 5.1694 -1.4443 -0.0002 42 1 3.7156 -2.4711 0.0000 43 1 3.7143 -2.4717 -2.4982 44 1 3.7147 -0.9308 -3.3887 45 1 5.1684 -1.4451 -2.4991 46 1 1.6765 -1.7490 -1.2492 47 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177130911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:19 Heat of formation + Delta-G solvation = -68.557006 kcal Electronic energy + Delta-G solvation = -22568.413578 eV Core-core repulsion = 19363.606608 eV Total energy + Delta-G solvation = -3204.806970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74414 -37.98323 -35.97756 -34.45215 -33.53369 -32.55537 -31.67708 -29.45432 -26.82409 -26.50652 -25.48412 -23.50694 -22.23848 -21.21863 -20.87673 -20.65733 -19.40984 -17.10956 -16.53735 -16.06743 -15.78007 -15.40756 -15.03274 -14.69093 -14.59387 -14.00452 -13.96952 -13.53480 -13.26668 -13.04351 -12.73852 -12.63457 -12.56772 -12.33954 -12.10682 -12.00562 -11.91021 -11.62185 -11.33052 -10.96205 -10.93835 -10.90372 -10.81517 -10.68449 -10.56066 -10.25025 -10.23458 -10.10275 -9.73132 -9.47508 -8.96775 -8.87660 -6.93904 -5.77460 -3.06377 2.65344 3.20521 3.44519 3.48525 3.49860 4.37398 4.41419 4.45330 4.59119 4.73104 4.87637 4.95914 5.07644 5.12938 5.18112 5.24371 5.31633 5.34700 5.42783 5.48760 5.54086 5.57322 5.59347 5.64224 5.67602 5.70581 5.73855 5.79584 5.93254 6.00723 6.02133 6.07489 6.10243 6.14611 6.19649 6.21466 6.32086 6.42375 6.59140 6.78987 6.83281 7.52521 7.69386 8.25795 8.41625 9.52592 10.09751 10.44517 11.45544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.002679 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.913764 B =10450.148186 C =10776.183174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.070 0.930 4 C -0.105 4.105 5 C -0.110 4.110 6 H 0.095 0.905 7 C 0.517 3.483 8 O -0.538 6.538 9 N -0.728 5.728 10 C 0.123 3.877 11 C -0.137 4.137 12 C 0.156 3.844 13 N -0.734 5.734 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.090 4.090 23 C -0.108 4.108 24 H 0.101 0.899 25 C -0.143 4.143 26 C -0.107 4.107 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 -21.652 -14.496 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.142 4.142 5 C -0.132 4.132 6 H 0.113 0.887 7 C 0.303 3.697 8 O -0.415 6.415 9 N -0.379 5.379 10 C -0.001 4.001 11 C -0.175 4.175 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.584 5.584 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.119 0.881 25 C -0.200 4.200 26 C -0.144 4.144 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.014 -21.179 -15.166 26.127 hybrid contribution -0.258 0.722 0.915 1.194 sum -2.272 -20.457 -14.251 25.035 Atomic orbital electron populations 1.21814 0.95015 1.01626 1.01907 1.21171 0.95574 0.99931 0.94804 0.91114 1.21601 0.92607 1.01652 0.98386 1.21395 0.97232 0.93471 1.01059 0.88667 1.20571 0.79932 0.87531 0.81624 1.90624 1.38060 1.77445 1.35387 1.46128 1.53685 1.12810 1.25281 1.21334 0.99340 0.80467 0.98975 1.21940 1.01444 0.97553 0.96605 1.20520 0.96449 0.89075 0.91124 1.42333 1.61568 1.10780 1.23118 1.19205 1.25721 0.87677 1.04564 0.91153 1.24755 1.00459 0.98447 0.97398 1.69652 1.39350 1.36287 1.13102 0.86236 0.77892 0.84780 0.77111 1.21218 1.21660 1.21223 1.21352 1.00832 0.97942 0.92679 1.21412 0.94728 1.02533 0.93944 0.88138 1.21775 1.00959 0.99782 0.97496 1.21643 0.95513 1.00092 0.97173 0.92536 0.92685 0.92773 0.90818 0.91416 0.76670 0.91480 0.91520 0.91364 0.91359 0.96100 0.96101 0.78309 0.93451 0.91448 0.91703 0.93312 0.93004 0.92785 0.92330 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.10 -0.84 2.50 -90.62 -0.23 -1.07 16 3 H 0.07 0.78 7.22 -51.93 -0.37 0.41 16 4 C -0.10 -0.79 4.64 -26.73 -0.12 -0.92 16 5 C -0.11 -0.96 3.01 -91.77 -0.28 -1.24 16 6 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 7 C 0.52 6.21 5.64 -10.99 -0.06 6.15 16 8 O -0.54 -8.32 13.66 5.56 0.08 -8.25 16 9 N -0.73 -8.26 5.45 -60.29 -0.33 -8.59 16 10 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16 11 C -0.14 -2.10 5.44 -26.73 -0.15 -2.25 16 12 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 13 N -0.73 -18.80 5.60 -59.90 -0.34 -19.13 16 14 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.94 -28.43 13.06 55.49 0.72 -27.70 16 18 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.09 -0.81 4.37 -26.73 -0.12 -0.93 16 23 C -0.11 -1.06 2.42 -90.65 -0.22 -1.28 16 24 H 0.10 1.29 5.51 -51.93 -0.29 1.01 16 25 C -0.14 -1.22 9.19 37.15 0.34 -0.88 16 26 C -0.11 -0.92 4.48 -26.76 -0.12 -1.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 7.57 -51.93 -0.39 0.08 16 32 H 0.40 3.64 7.89 -40.82 -0.32 3.32 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -32.04 365.46 -9.12 -41.16 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.84 Total: 6.44 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.90 Total: -6.99 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.06 Total: -55.42 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.04 -9.12 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177130911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.395 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds