Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47298 * 240.00014 * 2 1 3 5 5 C 1.52994 * 109.47115 * 180.02562 * 4 2 1 6 6 C 1.50708 * 109.47079 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99772 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99715 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99513 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47060 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72430 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 C 1.52997 * 109.47347 * 59.99908 * 5 4 2 22 22 C 1.53003 * 109.47227 * 299.99849 * 21 5 4 23 23 H 1.08998 * 109.47269 * 179.97438 * 22 21 5 24 24 C 1.53000 * 109.46985 * 300.00100 * 22 21 5 25 25 C 1.52996 * 109.46915 * 119.99701 * 2 1 3 26 26 H 1.08994 * 109.46775 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47249 * 300.00383 * 1 2 3 28 28 H 1.09004 * 109.47038 * 60.00373 * 1 2 3 29 29 H 1.08996 * 109.47544 * 59.99554 * 4 2 1 30 30 H 1.09008 * 109.46760 * 300.00054 * 4 2 1 31 31 H 1.08994 * 109.47339 * 299.99552 * 5 4 2 32 32 H 0.96995 * 120.00583 * 0.02562 * 8 6 5 33 33 H 1.08990 * 109.47414 * 59.99970 * 9 8 6 34 34 H 1.09002 * 109.47037 * 299.99282 * 9 8 6 35 35 H 1.09004 * 109.47038 * 59.99597 * 10 9 8 36 36 H 1.09000 * 109.46939 * 300.00250 * 10 9 8 37 37 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 38 38 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 39 39 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 40 40 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47498 * 59.99556 * 21 5 4 42 42 H 1.09003 * 109.47190 * 179.97438 * 21 5 4 43 43 H 1.09001 * 109.47192 * 179.97438 * 24 22 21 44 44 H 1.08994 * 109.47175 * 299.99560 * 24 22 21 45 45 H 1.09004 * 109.47131 * 59.99577 * 24 22 21 46 46 H 1.09001 * 109.47094 * 300.00011 * 25 2 1 47 47 H 1.08994 * 109.47269 * 60.00462 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0724 -1.4327 -2.4790 7 8 3.2843 -1.8932 -3.2776 8 7 5.3975 -1.5559 -2.6922 9 6 5.8858 -2.2466 -3.8884 10 6 7.4158 -2.2461 -3.8886 11 6 7.9259 -2.9680 -5.1375 12 7 9.3908 -2.9670 -5.1380 13 6 10.0756 -3.5652 -6.1620 14 1 9.5355 -4.0338 -6.9714 15 6 11.4637 -3.5693 -6.1596 16 7 12.1217 -4.1438 -7.1440 17 14 12.3976 -2.7594 -4.7591 18 1 12.6404 -3.7554 -3.6847 19 1 13.6975 -2.2472 -5.2621 20 1 11.5975 -1.6318 -4.2173 21 6 4.0795 -1.4433 0.0004 22 6 3.5695 -0.7221 1.2497 23 1 3.9321 -1.2364 2.1396 24 6 4.0800 0.7203 1.2499 25 6 2.0400 -0.7212 1.2493 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7490 -1.2492 31 1 3.9337 0.3057 -1.2487 32 1 6.0278 -1.1874 -2.0537 33 1 5.5226 -1.7328 -4.7783 34 1 5.5225 -3.2743 -3.8883 35 1 7.7795 -2.7597 -2.9985 36 1 7.7788 -1.2184 -3.8888 37 1 7.5622 -2.4548 -6.0277 38 1 7.5628 -3.9957 -5.1368 39 1 9.8759 -2.5464 -4.4108 40 1 13.0918 -4.1464 -7.1425 41 1 3.7158 -2.4709 0.0003 42 1 5.1695 -1.4441 0.0004 43 1 3.7163 1.2343 2.1397 44 1 5.1700 0.7199 1.2502 45 1 3.7171 1.2343 0.3599 46 1 1.6766 -0.2073 2.1392 47 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177130914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -65.908314 kcal Electronic energy + Delta-G solvation = -22243.392520 eV Core-core repulsion = 19038.700406 eV Total energy + Delta-G solvation = -3204.692114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62986 -38.66270 -36.17107 -34.51505 -33.54887 -32.41033 -31.72742 -29.92616 -27.20366 -26.79469 -25.71655 -23.59708 -22.03920 -21.68154 -21.29533 -20.11196 -19.05590 -17.63854 -17.04490 -16.19272 -15.81841 -15.41453 -15.18306 -14.79416 -14.40359 -14.31848 -14.03586 -13.89088 -13.63692 -13.34418 -12.97967 -12.81979 -12.49377 -12.44127 -12.18066 -12.02608 -11.92228 -11.58794 -11.41363 -11.29832 -11.19643 -11.04352 -10.83920 -10.80303 -10.71561 -10.59875 -10.28006 -10.17551 -9.71288 -9.59803 -9.08725 -8.91499 -7.25639 -5.77881 -3.14039 2.57470 3.10833 3.35259 3.37512 3.43442 4.23462 4.28197 4.30472 4.57413 4.67790 4.73714 4.77965 4.88353 4.94311 4.99970 5.01463 5.16798 5.20471 5.29170 5.33274 5.37424 5.44557 5.50206 5.50944 5.52696 5.58396 5.66302 5.73269 5.79071 5.80295 5.88768 5.90949 5.93097 5.95791 5.96212 6.03858 6.14041 6.18300 6.40987 6.67771 6.70931 7.43362 7.98304 8.16615 8.40884 9.19610 9.91685 10.11215 11.40481 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032109 B = 0.002636 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.808255 B =10620.164058 C =11291.274194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.093 4.093 5 C -0.107 4.107 6 C 0.513 3.487 7 O -0.541 6.541 8 N -0.729 5.729 9 C 0.122 3.878 10 C -0.141 4.141 11 C 0.160 3.840 12 N -0.757 5.757 13 C -0.245 4.245 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.887 3.113 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.106 4.106 22 C -0.090 4.090 23 H 0.073 0.927 24 C -0.154 4.154 25 C -0.111 4.111 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.360 0.640 40 H 0.260 0.740 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.550 10.903 20.664 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.131 4.131 5 C -0.129 4.129 6 C 0.299 3.701 7 O -0.418 6.418 8 N -0.380 5.380 9 C -0.002 4.002 10 C -0.180 4.180 11 C 0.033 3.967 12 N -0.403 5.403 13 C -0.375 4.375 14 H 0.109 0.891 15 C -0.193 4.193 16 N -0.582 5.582 17 Si 0.717 3.283 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.144 4.144 22 C -0.109 4.109 23 H 0.091 0.909 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.069 10.432 19.840 31.456 hybrid contribution 1.252 0.698 1.182 1.858 sum -20.817 11.130 21.022 31.609 Atomic orbital electron populations 1.21815 0.95118 1.01930 1.01585 1.21198 0.95550 0.99805 0.94712 0.90893 1.21393 0.92256 1.01835 0.97587 1.21392 0.98006 1.00652 0.92819 1.20684 0.82203 0.79746 0.87418 1.90701 1.55331 1.48557 1.47240 1.46112 1.07080 1.58952 1.25883 1.21331 0.94132 0.97500 0.87249 1.21990 0.93350 1.01914 1.00697 1.20497 0.84935 0.97358 0.93953 1.42690 1.00900 1.69507 1.27173 1.19076 0.89587 1.28448 1.00421 0.89146 1.24695 0.96147 1.00602 0.97853 1.69703 1.07025 1.48984 1.32453 0.86510 0.79699 0.79392 0.82676 1.21077 1.21692 1.20393 1.21574 1.00518 0.99499 0.92811 1.21083 0.95649 0.96471 0.97659 0.90854 1.21973 1.01003 0.96069 1.02041 1.21641 0.94773 1.00830 0.97574 0.92638 0.92784 0.92607 0.91266 0.91170 0.88405 0.76688 0.91269 0.91257 0.91391 0.91394 0.95230 0.95182 0.80701 0.93029 0.91260 0.91384 0.92689 0.92588 0.92044 0.91944 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.09 -0.62 2.45 -90.62 -0.22 -0.84 16 3 H 0.07 0.46 6.43 -51.92 -0.33 0.12 16 4 C -0.09 -0.80 3.77 -26.74 -0.10 -0.91 16 5 C -0.11 -0.90 2.25 -91.77 -0.21 -1.11 16 6 C 0.51 6.14 7.15 -10.98 -0.08 6.06 16 7 O -0.54 -8.71 15.98 5.56 0.09 -8.62 16 8 N -0.73 -7.93 5.45 -60.29 -0.33 -8.26 16 9 C 0.12 1.59 5.67 -4.04 -0.02 1.56 16 10 C -0.14 -2.00 5.44 -26.73 -0.15 -2.15 16 11 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 12 N -0.76 -18.09 5.41 -59.91 -0.32 -18.41 16 13 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 14 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 15 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 16 N -0.93 -29.56 13.97 55.49 0.78 -28.79 16 17 Si 0.89 22.05 27.74 -169.99 -4.71 17.33 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 21 C -0.11 -0.75 4.63 -26.73 -0.12 -0.87 16 22 C -0.09 -0.53 3.19 -90.64 -0.29 -0.82 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 C -0.15 -0.84 8.50 37.16 0.32 -0.52 16 25 C -0.11 -0.67 4.73 -26.76 -0.13 -0.79 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.07 0.70 8.10 -51.92 -0.42 0.28 16 31 H 0.10 0.70 6.43 -51.93 -0.33 0.37 16 32 H 0.40 3.33 7.89 -40.82 -0.32 3.01 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.27 5.53 -40.82 -0.23 8.05 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 43 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.34 4.81 -51.93 -0.25 0.09 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -33.47 361.84 -8.62 -42.09 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.63 Total: 4.35 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.94 Total: -5.16 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.12 Total: -55.46 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.47 -8.62 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177130914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.814 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds