Wall clock time and date at job start Tue Mar 31 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46658 * 2 1 4 4 C 1.52997 * 109.47190 * 119.99331 * 2 1 3 5 5 C 1.53004 * 109.47000 * 60.00434 * 4 2 1 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.52999 * 109.46992 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47306 * 180.02562 * 10 9 8 12 12 N 1.46509 * 109.47304 * 180.02562 * 11 10 9 13 13 C 1.36936 * 119.99887 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00079 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99775 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00156 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47235 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47420 * 119.99427 * 17 15 13 20 20 H 1.48497 * 109.47502 * 239.99439 * 17 15 13 21 21 C 1.52998 * 109.46876 * 59.99835 * 5 4 2 22 22 C 1.53005 * 109.47342 * 300.00069 * 21 5 4 23 23 H 1.09006 * 109.46726 * 300.00303 * 22 21 5 24 24 C 1.52998 * 109.47342 * 179.97438 * 22 21 5 25 25 C 1.52996 * 109.46953 * 60.00128 * 22 21 5 26 26 H 1.09000 * 109.47011 * 299.99805 * 1 2 3 27 27 H 1.08996 * 109.47069 * 60.00621 * 1 2 3 28 28 H 1.08998 * 109.46458 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47849 * 300.00351 * 4 2 1 30 30 H 1.08998 * 109.47443 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 32 32 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 33 33 H 1.08995 * 109.47421 * 299.99467 * 9 8 6 34 34 H 1.09001 * 109.47621 * 60.00103 * 9 8 6 35 35 H 1.09009 * 109.47378 * 299.99899 * 10 9 8 36 36 H 1.08993 * 109.47209 * 59.99808 * 10 9 8 37 37 H 1.08995 * 109.47215 * 299.99822 * 11 10 9 38 38 H 1.09001 * 109.47513 * 60.00266 * 11 10 9 39 39 H 0.96993 * 119.99778 * 359.97438 * 12 11 10 40 40 H 0.96993 * 120.00131 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.47458 * 59.99925 * 21 5 4 42 42 H 1.09004 * 109.47239 * 180.02562 * 21 5 4 43 43 H 1.08998 * 109.47126 * 300.00417 * 24 22 21 44 44 H 1.09004 * 109.46783 * 60.00263 * 24 22 21 45 45 H 1.08996 * 109.47009 * 179.97438 * 24 22 21 46 46 H 1.09005 * 109.47125 * 180.02562 * 25 22 21 47 47 H 1.08998 * 109.47408 * 60.00223 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.5301 -2.1637 1.2494 6 6 2.0330 -2.8741 2.4796 7 8 2.7309 -2.2849 3.2775 8 7 1.7121 -4.1661 2.6900 9 6 2.2059 -4.8585 3.8829 10 6 1.7001 -6.3025 3.8804 11 6 2.2152 -7.0255 5.1265 12 7 1.7314 -8.4083 5.1239 13 6 2.0669 -9.2530 6.1481 14 1 2.6884 -8.8999 6.9577 15 6 1.6089 -10.5634 6.1453 16 7 0.8517 -10.9938 5.1585 17 14 2.0670 -11.7159 7.5421 18 1 2.9206 -10.9941 8.5197 19 1 0.8325 -12.1902 8.2178 20 1 2.8125 -12.8798 6.9993 21 6 2.0402 -2.8849 0.0002 22 6 1.5302 -2.1637 -1.2492 23 1 0.4401 -2.1638 -1.2491 24 6 2.0408 -2.8846 -2.4984 25 6 2.0401 -0.7212 -1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.6767 -0.2073 2.1393 30 1 3.1300 -0.7207 1.2496 31 1 0.4401 -2.1637 1.2493 32 1 1.1542 -4.6375 2.0517 33 1 3.2959 -4.8551 3.8799 34 1 1.8433 -4.3485 4.7753 35 1 0.6100 -6.3057 3.8836 36 1 2.0623 -6.8128 2.9881 37 1 3.3052 -7.0223 5.1238 38 1 1.8526 -6.5150 6.0188 39 1 1.1729 -8.7253 4.3970 40 1 0.5314 -11.9094 5.1567 41 1 3.1303 -2.8848 0.0001 42 1 1.6766 -3.9125 0.0000 43 1 3.1308 -2.8842 -2.4981 44 1 1.6778 -3.9124 -2.4985 45 1 1.6771 -2.3711 -3.3883 46 1 1.6764 -0.2073 -2.1390 47 1 3.1301 -0.7211 -1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177130916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:42 Heat of formation + Delta-G solvation = -70.463757 kcal Electronic energy + Delta-G solvation = -22194.533118 eV Core-core repulsion = 18989.643465 eV Total energy + Delta-G solvation = -3204.889653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57145 -38.60229 -36.01685 -34.36815 -33.45180 -32.49191 -31.60935 -29.43250 -27.13330 -26.70682 -25.49531 -23.67593 -22.41299 -21.52341 -21.19221 -19.99029 -18.96983 -17.34650 -16.82451 -16.09227 -15.81138 -15.33250 -15.12857 -14.73288 -14.43566 -14.26739 -14.04902 -13.60196 -13.39556 -13.27482 -12.96768 -12.89576 -12.54661 -12.40546 -12.05451 -11.92301 -11.70683 -11.53594 -11.39511 -11.14436 -10.96256 -10.92922 -10.80959 -10.76203 -10.62140 -10.53072 -10.23863 -10.05082 -9.76436 -9.59878 -9.01259 -8.88898 -6.93925 -5.77888 -3.06742 2.63246 3.18741 3.43272 3.49086 3.51356 4.26388 4.32892 4.36045 4.58837 4.75671 4.77390 4.86763 4.93979 4.99354 5.10111 5.13784 5.19033 5.31838 5.34328 5.36496 5.38657 5.50274 5.57178 5.60041 5.60906 5.64053 5.70773 5.79223 5.82118 5.92038 5.98236 5.99489 6.05367 6.06704 6.07571 6.19281 6.20142 6.32006 6.49662 6.78909 6.83166 7.51008 7.70259 8.23027 8.41185 9.52345 10.09438 10.44192 11.45266 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032622 B = 0.002466 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.118265 B =11353.915917 C =11848.740788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.093 4.093 5 C -0.108 4.108 6 C 0.513 3.487 7 O -0.544 6.544 8 N -0.728 5.728 9 C 0.122 3.878 10 C -0.137 4.137 11 C 0.156 3.844 12 N -0.734 5.734 13 C -0.239 4.239 14 H 0.072 0.928 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.106 4.106 22 C -0.092 4.092 23 H 0.075 0.925 24 C -0.149 4.149 25 C -0.110 4.110 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 22.263 -16.340 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 H 0.090 0.910 4 C -0.131 4.131 5 C -0.129 4.129 6 C 0.299 3.701 7 O -0.421 6.421 8 N -0.379 5.379 9 C -0.002 4.002 10 C -0.175 4.175 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.370 4.370 14 H 0.090 0.910 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.144 4.144 22 C -0.110 4.110 23 H 0.093 0.907 24 C -0.206 4.206 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.097 22.616 -15.582 27.464 hybrid contribution -0.283 -1.150 0.244 1.209 sum -0.379 21.465 -15.338 26.385 Atomic orbital electron populations 1.21963 0.95339 1.02078 1.01586 1.21138 0.95929 0.99268 0.94789 0.90987 1.21359 1.01332 0.92808 0.97588 1.21390 1.02137 0.96462 0.92890 1.20681 0.80224 0.81777 0.87374 1.90694 1.37880 1.66185 1.47308 1.46120 1.53687 1.11972 1.26116 1.21347 0.99334 0.92326 0.87200 1.21940 1.01470 0.93370 1.00766 1.20522 0.96474 0.86463 0.93730 1.42352 1.61505 1.06473 1.27505 1.19296 1.25536 0.91783 1.00372 0.91038 1.24758 1.00510 0.97393 0.98484 1.69669 1.39521 1.16698 1.32466 0.86093 0.77561 0.80962 0.81452 1.20503 1.21833 1.21838 1.21605 1.01525 0.98708 0.92519 1.21166 1.00701 0.94848 0.94315 0.90653 1.21835 1.01308 1.00358 0.97095 1.21649 1.00720 0.95003 0.97419 0.92706 0.92813 0.92104 0.91263 0.91211 0.88398 0.76607 0.91456 0.91464 0.91341 0.91332 0.96066 0.96064 0.78311 0.93555 0.91280 0.91340 0.92654 0.92491 0.92679 0.91968 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.50 37.16 0.32 -0.64 16 2 C -0.09 -0.64 3.19 -90.62 -0.29 -0.93 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.09 -0.84 4.02 -26.73 -0.11 -0.95 16 5 C -0.11 -0.96 2.25 -91.77 -0.21 -1.16 16 6 C 0.51 6.43 7.16 -10.98 -0.08 6.36 16 7 O -0.54 -9.01 15.98 5.55 0.09 -8.92 16 8 N -0.73 -8.48 5.44 -60.30 -0.33 -8.80 16 9 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 10 C -0.14 -2.12 5.44 -26.73 -0.15 -2.26 16 11 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 12 N -0.73 -18.83 5.60 -59.91 -0.34 -19.16 16 13 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 14 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 15 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 16 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 17 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C -0.11 -0.81 4.38 -26.73 -0.12 -0.92 16 22 C -0.09 -0.59 2.45 -90.62 -0.22 -0.81 16 23 H 0.08 0.46 6.43 -51.93 -0.33 0.13 16 24 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 25 C -0.11 -0.70 4.73 -26.73 -0.13 -0.83 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 4.81 -51.93 -0.25 0.12 16 29 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.10 0.75 6.43 -51.93 -0.33 0.42 16 32 H 0.40 3.69 7.88 -40.82 -0.32 3.36 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.20 7.67 -40.82 -0.31 9.88 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.48 7.55 -51.93 -0.39 0.09 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -32.65 364.94 -8.98 -41.63 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.67 Total: 5.31 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.93 Total: -5.42 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.06 Total: -55.67 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.65 -8.98 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177130916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.836 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds