Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47283 * 2 1 4 4 O 1.21282 * 119.99548 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99759 * 180.02562 * 3 2 1 6 6 C 1.46493 * 120.00646 * 0.02562 * 5 3 2 7 7 C 1.52997 * 109.47377 * 270.00434 * 6 5 3 8 8 C 1.52998 * 109.47222 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47297 * 179.97438 * 8 7 6 10 10 C 1.36933 * 120.00003 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00476 * 0.02562 * 10 9 8 12 12 C 1.38814 * 119.99729 * 179.97438 * 10 9 8 13 13 N 1.31616 * 120.00120 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99806 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47335 * 60.00013 * 14 12 10 16 16 H 1.48498 * 109.46991 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47304 * 300.00055 * 14 12 10 18 18 C 1.46505 * 119.99455 * 180.02562 * 5 3 2 19 19 C 1.52997 * 109.47212 * 90.00023 * 18 5 3 20 20 C 1.54267 * 110.03373 * 292.90986 * 19 18 5 21 21 C 1.54968 * 104.16137 * 217.13581 * 20 19 18 22 22 C 1.54884 * 102.77441 * 37.88396 * 21 20 19 23 23 C 1.53874 * 110.03593 * 175.68906 * 19 18 5 24 24 H 1.09002 * 109.47244 * 59.99807 * 1 2 3 25 25 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46715 * 299.99592 * 1 2 3 27 27 H 1.09006 * 109.47088 * 240.00554 * 2 1 3 28 28 H 1.08999 * 109.47644 * 120.00835 * 2 1 3 29 29 H 1.09006 * 109.46911 * 30.00087 * 6 5 3 30 30 H 1.08996 * 109.47170 * 149.99599 * 6 5 3 31 31 H 1.09006 * 109.46817 * 299.99710 * 7 6 5 32 32 H 1.08996 * 109.47652 * 59.99460 * 7 6 5 33 33 H 1.09006 * 109.46906 * 299.99555 * 8 7 6 34 34 H 1.08994 * 109.47772 * 59.99447 * 8 7 6 35 35 H 0.97000 * 119.99321 * 359.97438 * 9 8 7 36 36 H 0.97005 * 119.99874 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47068 * 210.00083 * 18 5 3 38 38 H 1.09001 * 109.47372 * 330.00170 * 18 5 3 39 39 H 1.09004 * 110.01939 * 54.29375 * 19 18 5 40 40 H 1.09001 * 110.48609 * 335.77840 * 20 19 18 41 41 H 1.08999 * 110.49311 * 98.42344 * 20 19 18 42 42 H 1.08997 * 110.72048 * 279.57487 * 21 20 19 43 43 H 1.08993 * 110.92252 * 156.29196 * 21 20 19 44 44 H 1.09009 * 110.48779 * 203.40596 * 22 21 20 45 45 H 1.09001 * 110.59973 * 80.82109 * 22 21 20 46 46 H 1.09003 * 110.03243 * 238.56963 * 23 19 18 47 47 H 1.08996 * 110.02723 * 359.95243 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3094 0.5536 -0.0017 7 6 4.6415 0.1650 1.4404 8 6 5.6363 -0.9974 1.4392 9 7 5.9548 -1.3691 2.8200 10 6 6.8299 -2.3925 3.0691 11 1 7.2857 -2.9254 2.2477 12 6 7.1320 -2.7443 4.3775 13 7 6.5770 -2.0946 5.3786 14 14 8.3264 -4.1398 4.7173 15 1 9.6466 -3.8185 4.1182 16 1 8.4784 -4.3151 6.1841 17 1 7.8041 -5.3949 4.1199 18 6 3.8457 3.0483 0.0000 19 6 4.0164 3.5283 1.4427 20 6 2.6396 3.6374 2.1298 21 6 2.7628 4.8940 3.0284 22 6 3.6051 5.8575 2.1561 23 6 4.6305 4.9391 1.4597 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8688 -0.3006 -0.5158 30 1 5.2216 0.8561 -0.5158 31 1 5.0821 1.0192 1.9546 32 1 3.7293 -0.1375 1.9545 33 1 5.1961 -1.8518 0.9249 34 1 6.5485 -0.6946 0.9252 35 1 5.5457 -0.8903 3.5577 36 1 6.7879 -2.3407 6.2929 37 1 4.8057 3.0945 -0.5143 38 1 3.1275 3.6878 -0.5130 39 1 4.6545 2.8367 1.9931 40 1 1.8529 3.7749 1.3880 41 1 2.4439 2.7523 2.7351 42 1 3.2848 4.6557 3.9551 43 1 1.7818 5.3203 3.2380 44 1 4.1135 6.5920 2.7809 45 1 2.9763 6.3557 1.4182 46 1 5.5661 4.9324 2.0190 47 1 4.8076 5.2814 0.4402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177167200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = -54.653381 kcal Electronic energy + Delta-G solvation = -23185.821153 eV Core-core repulsion = 19981.617089 eV Total energy + Delta-G solvation = -3204.204064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.26779 -37.94362 -36.32747 -34.66885 -32.91840 -32.08241 -30.33735 -29.24852 -28.58278 -25.67252 -25.36987 -23.28209 -22.69252 -21.08175 -20.60903 -19.58758 -18.94086 -17.29398 -17.08269 -16.30211 -15.73999 -15.31915 -14.95547 -14.64332 -14.42784 -14.02258 -13.71173 -13.34850 -13.30716 -13.13688 -12.89513 -12.39398 -12.23872 -12.14542 -11.94422 -11.67593 -11.35798 -11.21630 -11.11759 -11.02600 -10.92770 -10.85541 -10.79186 -10.68311 -10.59266 -10.54565 -10.20036 -10.08567 -9.74591 -9.57519 -8.88887 -8.56691 -6.94766 -5.77979 -3.07217 2.67733 3.03487 3.42857 3.47201 3.48426 4.47926 4.57523 4.65655 4.68392 4.75607 4.97062 5.04314 5.08415 5.17827 5.23744 5.37567 5.47791 5.51431 5.53716 5.55278 5.56786 5.64611 5.68777 5.77431 5.80370 5.82601 5.90265 5.91581 5.94136 5.97344 6.05097 6.14308 6.17562 6.23528 6.29881 6.32796 6.39154 6.52461 6.65743 6.80393 6.82058 7.42061 7.67360 8.24833 8.40700 9.51706 10.09608 10.43766 11.44820 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.004092 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.300366 B = 6841.731697 C = 7916.071122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.516 3.484 4 O -0.543 6.543 5 N -0.610 5.610 6 C 0.111 3.889 7 C -0.144 4.144 8 C 0.156 3.844 9 N -0.733 5.733 10 C -0.242 4.242 11 H 0.070 0.930 12 C -0.013 4.013 13 N -0.934 5.934 14 Si 0.907 3.093 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.286 1.286 18 C 0.124 3.876 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.117 4.117 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 11.622 -11.976 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.188 4.188 3 C 0.305 3.695 4 O -0.421 6.421 5 N -0.342 5.342 6 C -0.012 4.012 7 C -0.183 4.183 8 C 0.027 3.973 9 N -0.377 5.377 10 C -0.373 4.373 11 H 0.088 0.912 12 C -0.209 4.209 13 N -0.582 5.582 14 Si 0.738 3.262 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.212 1.212 18 C 0.001 3.999 19 C -0.131 4.131 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.156 4.156 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.698 11.972 -12.013 19.060 hybrid contribution 0.814 -0.759 0.648 1.287 sum -7.884 11.213 -11.366 17.806 Atomic orbital electron populations 1.21515 0.93289 1.01442 1.02984 1.21720 0.98307 0.94139 1.04616 1.20733 0.81747 0.91777 0.75238 1.90613 1.55007 1.46482 1.49976 1.48028 1.05922 1.07021 1.73260 1.21661 0.92816 0.88820 0.97920 1.22225 1.00527 0.99875 0.95697 1.20559 0.94559 0.93324 0.88832 1.42338 1.53755 1.40587 1.01044 1.19183 1.17800 1.08564 0.91777 0.91220 1.24745 1.00698 0.99886 0.95562 1.69652 1.47106 1.43230 0.98215 0.86266 0.80941 0.82066 0.76904 1.21252 1.21661 1.21232 1.21637 0.99497 0.82281 0.96492 1.22282 0.97738 0.96844 0.96255 1.22599 0.97251 0.97201 0.98924 1.22510 0.99469 0.96076 0.98321 1.22323 0.97497 0.97526 0.98641 1.22129 0.98566 0.94336 1.00521 0.92322 0.92208 0.92078 0.89096 0.88453 0.90199 0.90221 0.91332 0.91782 0.96354 0.96370 0.78296 0.93431 0.90872 0.90121 0.90312 0.89331 0.92519 0.91816 0.92042 0.92084 0.91909 0.91688 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.20 37.16 0.34 -1.07 16 2 C -0.15 -1.61 4.97 -27.88 -0.14 -1.75 16 3 C 0.52 6.72 7.09 -10.98 -0.08 6.64 16 4 O -0.54 -8.43 13.02 5.56 0.07 -8.36 16 5 N -0.61 -7.24 2.42 -173.69 -0.42 -7.66 16 6 C 0.11 1.26 5.26 -4.05 -0.02 1.24 16 7 C -0.14 -2.15 5.63 -26.73 -0.15 -2.30 16 8 C 0.16 2.93 6.26 -4.04 -0.03 2.91 16 9 N -0.73 -18.34 5.60 -59.91 -0.34 -18.67 16 10 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 11 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 12 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 13 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 14 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.12 1.39 4.75 -4.04 -0.02 1.37 16 19 C -0.11 -1.33 3.15 -89.50 -0.28 -1.61 16 20 C -0.12 -1.60 5.36 -25.03 -0.13 -1.73 16 21 C -0.13 -1.46 6.91 -24.70 -0.17 -1.63 16 22 C -0.12 -1.25 6.83 -25.08 -0.17 -1.42 16 23 C -0.12 -1.22 6.46 -25.61 -0.17 -1.38 16 24 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 27 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 28 H 0.10 1.09 7.19 -51.93 -0.37 0.71 16 29 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 30 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 31 H 0.07 1.09 6.15 -51.93 -0.32 0.77 16 32 H 0.06 1.00 7.22 -51.93 -0.37 0.63 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 10.18 7.67 -40.82 -0.31 9.86 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 38 H 0.08 0.97 7.30 -51.93 -0.38 0.59 16 39 H 0.08 1.06 6.12 -51.93 -0.32 0.74 16 40 H 0.09 1.29 5.47 -51.93 -0.28 1.00 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -31.32 362.36 -9.27 -40.60 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.49 Total: 6.99 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -1.26 Total: -8.07 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.03 Total: -53.85 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.07 Total: -8.36 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.32 -9.27 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177167200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.056 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds