Wall clock time and date at job start Tue Mar 31 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47462 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99624 * 2 1 3 5 5 C 1.53002 * 109.47185 * 300.00424 * 4 2 1 6 6 C 1.53009 * 109.46985 * 299.99813 * 5 4 2 7 7 C 1.52994 * 109.47006 * 60.00078 * 6 5 4 8 8 C 1.53002 * 109.47185 * 299.99800 * 7 6 5 9 9 H 1.09000 * 109.47348 * 300.00034 * 8 7 6 10 10 C 1.52999 * 109.47325 * 179.97438 * 8 7 6 11 11 C 1.50708 * 109.46749 * 65.00547 * 10 8 7 12 12 O 1.21287 * 119.99868 * 359.97438 * 11 10 8 13 13 N 1.34771 * 120.00114 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00212 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47357 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47301 * 179.97438 * 15 14 13 17 17 N 1.46493 * 109.47400 * 179.97438 * 16 15 14 18 18 C 1.36936 * 120.00314 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00159 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99842 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99540 * 179.72505 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09003 * 109.47115 * 300.00209 * 1 2 3 27 27 H 1.09005 * 109.46650 * 60.00132 * 1 2 3 28 28 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47482 * 59.99989 * 4 2 1 30 30 H 1.09000 * 109.47005 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47348 * 59.99966 * 5 4 2 32 32 H 1.08999 * 109.47437 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.46886 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46781 * 299.99910 * 6 5 4 35 35 H 1.08998 * 109.47482 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47300 * 59.99325 * 7 6 5 37 37 H 1.08999 * 109.47603 * 305.00967 * 10 8 7 38 38 H 1.09003 * 109.47349 * 184.99714 * 10 8 7 39 39 H 0.97005 * 120.00065 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.47039 * 60.00081 * 14 13 11 41 41 H 1.08994 * 109.47376 * 299.99946 * 14 13 11 42 42 H 1.09004 * 109.47038 * 60.00009 * 15 14 13 43 43 H 1.09000 * 109.46939 * 300.00662 * 15 14 13 44 44 H 1.09004 * 109.47066 * 60.00027 * 16 15 14 45 45 H 1.09000 * 109.47234 * 300.00536 * 16 15 14 46 46 H 0.97000 * 120.00040 * 0.02562 * 17 16 15 47 47 H 0.96999 * 119.99889 * 180.27497 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0002 7 6 1.5299 -2.1638 1.2494 8 6 2.0400 -0.7213 1.2494 9 1 3.1300 -0.7213 1.2494 10 6 1.5294 0.0003 2.4982 11 6 2.1299 -0.6348 3.7260 12 8 2.8908 -1.5725 3.6131 13 7 1.8205 -0.1615 4.9493 14 6 2.4038 -0.7792 6.1428 15 6 1.8924 -0.0584 7.3918 16 6 2.5010 -0.7040 8.6383 17 7 2.0119 -0.0135 9.8341 18 6 2.4232 -0.4194 11.0756 19 1 3.1086 -1.2484 11.1731 20 6 1.9592 0.2345 12.2087 21 7 2.3504 -0.1592 13.4022 22 14 0.7732 1.6678 12.0402 23 1 1.5402 2.9349 11.9333 24 1 -0.0536 1.4853 10.8202 25 1 -0.1097 1.7227 13.2329 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6768 -0.2076 -2.1392 30 1 3.1300 -0.7217 -1.2489 31 1 0.4400 -2.1638 -1.2492 32 1 1.8937 -2.6778 -2.1388 33 1 1.6762 -3.9125 0.0005 34 1 3.1299 -2.8851 0.0002 35 1 1.8935 -2.6772 2.1394 36 1 0.4399 -2.1636 1.2493 37 1 0.4431 -0.0767 2.5438 38 1 1.8179 1.0505 2.4545 39 1 1.2116 0.5883 5.0396 40 1 3.4902 -0.7023 6.0977 41 1 2.1154 -1.8294 6.1862 42 1 0.8060 -0.1358 7.4367 43 1 2.1803 0.9919 7.3486 44 1 3.5874 -0.6270 8.5936 45 1 2.2126 -1.7543 8.6811 46 1 1.3960 0.7308 9.7466 47 1 2.0231 0.2952 14.1942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177310636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:34 Heat of formation + Delta-G solvation = -63.836181 kcal Electronic energy + Delta-G solvation = -22046.748296 eV Core-core repulsion = 18842.146036 eV Total energy + Delta-G solvation = -3204.602260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43629 -38.87588 -36.17985 -34.46557 -33.15217 -32.03348 -31.88651 -30.15951 -28.20845 -26.61213 -25.09347 -22.72414 -22.34578 -21.69499 -21.30327 -20.17198 -18.68885 -17.63275 -16.99490 -16.19045 -15.94413 -15.78267 -15.14203 -14.71287 -14.56266 -14.35064 -14.04096 -13.74724 -13.46776 -13.17577 -12.88147 -12.82633 -12.77577 -12.45178 -12.05564 -11.95884 -11.84806 -11.62510 -11.32609 -11.20168 -11.04930 -11.01171 -10.83928 -10.72090 -10.46882 -10.40734 -10.19976 -10.16960 -9.67432 -9.59557 -9.07192 -8.91626 -7.25772 -5.78034 -3.14207 2.58843 3.12451 3.35100 3.37378 3.43335 4.31570 4.39170 4.41401 4.57248 4.70769 4.82601 4.92376 4.93320 5.00480 5.07300 5.09292 5.19701 5.22776 5.31102 5.34188 5.41505 5.49776 5.50749 5.52537 5.55886 5.65370 5.73822 5.79288 5.82625 5.88671 5.92055 5.94958 5.96415 6.00045 6.08962 6.13759 6.27982 6.30172 6.44646 6.67497 6.70662 7.43770 7.98097 8.17948 8.40791 9.19430 9.91509 10.11034 11.40311 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043011 B = 0.002342 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.842016 B =11955.054779 C =12365.257548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.064 4.064 9 H 0.077 0.923 10 C -0.140 4.140 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.731 5.731 14 C 0.122 3.878 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.291 1.291 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 1.204 -31.939 32.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.083 4.083 9 H 0.096 0.904 10 C -0.180 4.180 11 C 0.295 3.705 12 O -0.415 6.415 13 N -0.383 5.383 14 C -0.002 4.002 15 C -0.180 4.180 16 C 0.032 3.968 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.718 3.282 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.217 1.217 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.902 0.379 -31.821 32.062 hybrid contribution -1.181 1.496 0.195 1.916 sum -5.083 1.875 -31.626 32.086 Atomic orbital electron populations 1.22010 0.95402 1.02251 1.01442 1.21143 0.95932 0.98955 0.94598 0.91348 1.21537 1.00607 0.95743 0.97175 1.21594 1.00854 0.95603 0.97883 1.21493 1.00878 0.98650 0.94438 1.21744 1.00015 0.95123 0.99042 1.20899 1.00890 0.94866 0.91633 0.90427 1.21828 1.02158 1.01036 0.92944 1.20726 0.81436 0.83657 0.84643 1.90677 1.35932 1.28265 1.86627 1.46139 1.49355 1.36599 1.06208 1.21318 0.98440 0.97438 0.82968 1.21991 1.01300 1.00392 0.94282 1.20498 0.96644 0.95174 0.84437 1.42691 1.56082 1.39041 1.02459 1.19075 1.22938 1.13740 0.81776 0.89144 1.24702 1.00177 0.99347 0.95103 1.69708 1.48212 1.43368 0.96871 0.86505 0.81449 0.83458 0.76832 1.21077 1.20405 1.21691 0.92613 0.92974 0.91896 0.92189 0.92016 0.91850 0.92457 0.92325 0.92052 0.89943 0.92443 0.88810 0.89044 0.76704 0.91283 0.91297 0.91411 0.91395 0.95191 0.95239 0.80696 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.15 37.16 0.30 -0.60 16 2 C -0.09 -0.58 2.72 -90.62 -0.25 -0.82 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -0.74 5.45 -26.73 -0.15 -0.88 16 5 C -0.12 -0.83 5.65 -26.73 -0.15 -0.98 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.12 -1.11 4.67 -26.73 -0.12 -1.24 16 8 C -0.06 -0.53 1.61 -90.61 -0.15 -0.68 16 9 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 10 C -0.14 -1.08 4.67 -27.88 -0.13 -1.21 16 11 C 0.51 5.75 7.55 -10.98 -0.08 5.67 16 12 O -0.54 -8.10 13.97 5.55 0.08 -8.02 16 13 N -0.73 -7.68 5.56 -60.29 -0.33 -8.02 16 14 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 15 C -0.14 -1.99 5.44 -26.73 -0.15 -2.14 16 16 C 0.16 3.05 6.26 -4.05 -0.03 3.02 16 17 N -0.76 -18.06 5.41 -59.91 -0.32 -18.38 16 18 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 22 Si 0.89 22.03 27.74 -169.99 -4.72 17.32 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.43 6.51 56.52 0.37 -6.06 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H 0.05 0.30 6.54 -51.93 -0.34 -0.04 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 36 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 37 H 0.09 0.59 6.71 -51.93 -0.35 0.25 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.36 8.26 5.52 -40.82 -0.23 8.04 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -33.18 356.28 -8.89 -42.08 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.41 Total: 5.07 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.33 Total: -6.65 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.12 Total: -55.16 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.18 -8.89 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177310636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.761 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds