Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.52999 * 109.47628 * 240.00203 * 2 1 3 5 5 C 1.52997 * 109.47317 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 10 10 C 1.53002 * 109.47143 * 180.02562 * 8 7 6 11 11 C 1.50696 * 109.47039 * 295.00134 * 10 8 7 12 12 O 1.21284 * 120.00000 * 0.02562 * 11 10 8 13 13 N 1.34782 * 120.00377 * 180.02562 * 11 10 8 14 14 C 1.46494 * 120.00378 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47268 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47202 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47078 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99755 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00220 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99597 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00065 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99895 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47216 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47277 * 119.99890 * 22 20 18 25 25 H 1.48505 * 109.47191 * 240.00082 * 22 20 18 26 26 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 27 27 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 28 28 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46929 * 59.99225 * 4 2 1 30 30 H 1.09002 * 109.46716 * 300.00030 * 4 2 1 31 31 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 32 32 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 34 34 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 37 37 H 1.08997 * 109.47011 * 55.00129 * 10 8 7 38 38 H 1.08999 * 109.47369 * 175.00236 * 10 8 7 39 39 H 0.97004 * 119.99318 * 359.97438 * 13 11 10 40 40 H 1.08996 * 109.47136 * 300.00490 * 14 13 11 41 41 H 1.09008 * 109.47020 * 60.00024 * 14 13 11 42 42 H 1.08996 * 109.47701 * 300.00462 * 15 14 13 43 43 H 1.08999 * 109.46977 * 60.00451 * 15 14 13 44 44 H 1.08997 * 109.47507 * 300.00350 * 16 15 14 45 45 H 1.08999 * 109.46729 * 60.00369 * 16 15 14 46 46 H 0.96999 * 120.00112 * 0.02562 * 17 16 15 47 47 H 0.97006 * 119.99679 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2497 8 6 2.0396 -0.7216 1.2493 9 1 1.6759 -1.7491 1.2491 10 6 1.5295 0.0002 2.4982 11 6 1.9276 -0.7779 3.7258 12 8 2.5577 -1.8080 3.6130 13 7 1.5834 -0.3290 4.9493 14 6 1.9700 -1.0857 6.1426 15 6 1.4601 -0.3639 7.3915 16 6 1.8632 -1.1545 8.6378 17 7 1.3744 -0.4637 9.8337 18 6 1.6178 -0.9883 11.0750 19 1 2.1696 -1.9114 11.1723 20 6 1.1541 -0.3339 12.2080 21 7 0.4810 0.7909 12.0893 22 14 1.4866 -1.0491 13.9013 23 1 2.2581 -2.3104 13.7632 24 1 2.2686 -0.0755 14.7050 25 1 0.1970 -1.3302 14.5819 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -0.2074 -2.1392 30 1 1.6768 -1.7489 -1.2492 31 1 3.9338 0.3059 -1.2486 32 1 3.9335 -1.2359 -2.1386 33 1 3.7159 -2.4708 0.0002 34 1 5.1696 -1.4433 0.0009 35 1 3.9328 -1.2359 2.1397 36 1 3.9331 0.3055 1.2499 37 1 1.9644 0.9986 2.5439 38 1 0.4432 0.0788 2.4543 39 1 1.0798 0.4951 5.0395 40 1 1.5351 -2.0841 6.0964 41 1 3.0563 -1.1643 6.1869 42 1 1.8952 0.6343 7.4375 43 1 0.3738 -0.2850 7.3474 44 1 1.4276 -2.1526 8.5917 45 1 2.9494 -1.2338 8.6821 46 1 0.8784 0.3653 9.7462 47 1 0.1567 1.2479 12.8811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177310637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = -72.164740 kcal Electronic energy + Delta-G solvation = -21901.992944 eV Core-core repulsion = 18697.029531 eV Total energy + Delta-G solvation = -3204.963413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27263 -38.63960 -36.01699 -34.32593 -33.39347 -32.28260 -31.89854 -29.71464 -27.94216 -26.27340 -24.94810 -22.85515 -22.12111 -21.28129 -21.15992 -20.10849 -19.87252 -17.26383 -16.75996 -16.05097 -15.82459 -15.21445 -14.98365 -14.67660 -14.63116 -14.37952 -14.12528 -13.82392 -13.29042 -13.14926 -12.96204 -12.75787 -12.44067 -12.30977 -12.07230 -11.77597 -11.73884 -11.61273 -11.20753 -11.06769 -10.95938 -10.93058 -10.77678 -10.64853 -10.61828 -10.37229 -10.19043 -10.04561 -9.75487 -9.57267 -8.99693 -8.89082 -6.94131 -5.78107 -3.06956 2.64824 3.19905 3.43129 3.48912 3.51209 4.35015 4.40584 4.46606 4.58701 4.73369 4.80441 4.93326 5.03619 5.11336 5.15979 5.21142 5.27953 5.30984 5.32552 5.36719 5.47364 5.51872 5.55030 5.56972 5.63690 5.67724 5.77859 5.84429 5.94938 5.97858 5.99370 6.03345 6.07019 6.09369 6.19254 6.29712 6.32210 6.32298 6.52079 6.78684 6.82935 7.51479 7.70115 8.24387 8.40938 9.52089 10.09245 10.43919 11.44982 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047229 B = 0.002190 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.709301 B =12782.007805 C =13158.108231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.064 4.064 9 H 0.078 0.922 10 C -0.142 4.142 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.730 5.730 14 C 0.122 3.878 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.072 0.928 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 0.552 -28.696 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.082 4.082 9 H 0.096 0.904 10 C -0.182 4.182 11 C 0.296 3.704 12 O -0.417 6.417 13 N -0.382 5.382 14 C -0.002 4.002 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.090 0.910 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.391 -0.322 -28.631 28.732 hybrid contribution -0.329 0.434 1.094 1.222 sum 2.061 0.112 -27.537 27.614 Atomic orbital electron populations 1.21932 0.95368 1.01985 1.01670 1.21181 0.95318 0.99558 0.94584 0.91218 1.21568 0.95583 1.00703 0.97170 1.21556 0.95645 1.00648 0.97935 1.21500 0.99986 0.99575 0.94433 1.21717 0.94635 1.00394 0.99084 1.20920 0.95974 0.99695 0.91648 0.90390 1.21855 1.03096 1.00282 0.92935 1.20713 0.79253 0.85822 0.84661 1.90668 1.39768 1.24639 1.86655 1.46149 1.57920 1.27920 1.06189 1.21334 1.00275 0.95393 0.83158 1.21939 1.01551 1.00150 0.93918 1.20523 0.96700 0.94475 0.85505 1.42353 1.66746 1.28005 1.00734 1.19298 1.28908 1.05149 0.83649 0.91027 1.24766 1.00960 0.97502 0.97962 1.69674 1.42413 1.17921 1.28321 0.86087 0.77367 0.78104 0.84475 1.20500 1.21836 1.21845 0.92335 0.92785 0.92605 0.92188 0.91984 0.92193 0.92353 0.92023 0.92309 0.89826 0.92781 0.89038 0.88667 0.76622 0.91482 0.91488 0.91343 0.91351 0.96074 0.96068 0.78310 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.85 37.16 0.33 -0.62 16 2 C -0.09 -0.61 2.25 -90.62 -0.20 -0.81 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.11 -0.77 5.20 -26.73 -0.14 -0.91 16 5 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 6 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 7 C -0.12 -1.16 4.94 -26.73 -0.13 -1.29 16 8 C -0.06 -0.55 1.36 -90.62 -0.12 -0.68 16 9 H 0.08 0.82 7.96 -51.93 -0.41 0.40 16 10 C -0.14 -1.17 4.96 -27.88 -0.14 -1.31 16 11 C 0.51 6.06 7.55 -10.98 -0.08 5.98 16 12 O -0.54 -8.40 13.97 5.55 0.08 -8.32 16 13 N -0.73 -8.24 5.56 -60.30 -0.33 -8.58 16 14 C 0.12 1.67 5.67 -4.05 -0.02 1.65 16 15 C -0.14 -2.11 5.44 -26.73 -0.15 -2.25 16 16 C 0.16 3.14 6.26 -4.04 -0.03 3.11 16 17 N -0.73 -18.81 5.60 -59.91 -0.34 -19.14 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H 0.06 0.34 6.32 -51.93 -0.33 0.01 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.02 5.95 -51.93 -0.31 0.71 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.64 6.17 -51.93 -0.32 0.32 16 39 H 0.40 3.51 8.47 -40.82 -0.35 3.16 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -32.36 365.98 -9.39 -41.75 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.76 Total: 5.70 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.25 Total: -6.80 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.05 Total: -55.41 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.08 Total: -8.32 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.36 -9.39 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177310637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.415 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds