Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46717 * 2 1 4 4 C 1.53001 * 109.46907 * 119.99837 * 2 1 3 5 5 C 1.53001 * 109.46576 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47347 * 300.00147 * 5 4 2 7 7 C 1.52997 * 109.47049 * 60.00388 * 6 5 4 8 8 C 1.52992 * 109.47355 * 240.00196 * 2 1 3 9 9 H 1.09002 * 109.47112 * 300.00358 * 8 2 1 10 10 C 1.53005 * 109.47321 * 59.99608 * 8 2 1 11 11 C 1.50696 * 109.47353 * 184.99920 * 10 8 2 12 12 O 1.21284 * 120.00096 * 0.02562 * 11 10 8 13 13 N 1.34774 * 119.99838 * 180.02562 * 11 10 8 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47289 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47369 * 179.97438 * 16 15 14 18 18 C 1.36937 * 120.00316 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99647 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00249 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99665 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00093 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46994 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46771 * 119.99747 * 22 20 18 25 25 H 1.48491 * 109.47168 * 239.99666 * 22 20 18 26 26 H 1.09002 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47752 * 299.99559 * 1 2 3 28 28 H 1.09000 * 109.47229 * 59.99817 * 1 2 3 29 29 H 1.08998 * 109.46991 * 60.00547 * 4 2 1 30 30 H 1.09000 * 109.47229 * 300.00051 * 4 2 1 31 31 H 1.09000 * 109.46898 * 180.02562 * 5 4 2 32 32 H 1.08998 * 109.47165 * 60.00468 * 5 4 2 33 33 H 1.09006 * 109.47074 * 300.00000 * 6 5 4 34 34 H 1.08998 * 109.47231 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46875 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47192 * 59.99845 * 7 6 5 37 37 H 1.09004 * 109.46832 * 65.00052 * 10 8 2 38 38 H 1.09001 * 109.47420 * 305.00491 * 10 8 2 39 39 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 41 41 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99854 * 15 14 13 43 43 H 1.08996 * 109.46952 * 59.99873 * 15 14 13 44 44 H 1.09001 * 109.46997 * 299.99574 * 16 15 14 45 45 H 1.09004 * 109.47298 * 59.99717 * 16 15 14 46 46 H 0.96998 * 119.99822 * 0.02562 * 17 16 15 47 47 H 0.97001 * 119.99952 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2495 6 6 4.0805 -1.4415 0.0003 7 6 3.5705 -0.7202 -1.2489 8 6 2.0400 -0.7212 -1.2492 9 1 1.6767 -1.7488 -1.2493 10 6 1.5300 0.0001 -2.4985 11 6 1.9287 -0.7782 -3.7258 12 8 2.5584 -1.8085 -3.6125 13 7 1.5856 -0.3292 -4.9494 14 6 1.9727 -1.0860 -6.1426 15 6 1.4639 -0.3640 -7.3918 16 6 1.8676 -1.1548 -8.6378 17 7 1.3799 -0.4638 -9.8340 18 6 1.6239 -0.9884 -11.0752 19 1 2.1763 -1.9114 -11.1722 20 6 1.1623 -0.3335 -12.2086 21 7 0.4895 0.7916 -12.0904 22 14 1.4958 -1.0487 -13.9017 23 1 2.2656 -2.3109 -13.7628 24 1 0.2065 -1.3283 -14.5836 25 1 2.2796 -0.0760 -14.7044 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 1.6766 -0.2074 2.1392 31 1 3.9333 -1.2348 2.1393 32 1 3.9329 0.3072 1.2498 33 1 3.7176 -2.4693 0.0001 34 1 5.1705 -1.4414 0.0007 35 1 3.9339 -1.2340 -2.1389 36 1 3.9335 0.3076 -1.2487 37 1 1.9646 0.9987 -2.5444 38 1 0.4437 0.0783 -2.4549 39 1 1.0816 0.4947 -5.0400 40 1 3.0590 -1.1650 -6.1861 41 1 1.5374 -2.0843 -6.0967 42 1 0.3776 -0.2847 -7.3485 43 1 1.8995 0.6340 -7.4374 44 1 2.9539 -1.2344 -8.6814 45 1 1.4316 -2.1528 -8.5920 46 1 0.8847 0.3657 -9.7469 47 1 0.1672 1.2495 -12.8824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177310638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -72.187682 kcal Electronic energy + Delta-G solvation = -21901.619881 eV Core-core repulsion = 18696.655473 eV Total energy + Delta-G solvation = -3204.964408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27127 -38.63892 -36.01667 -34.32596 -33.39283 -32.28180 -31.89851 -29.71492 -27.94218 -26.27314 -24.94808 -22.85533 -22.12152 -21.28060 -21.15937 -20.10902 -19.87174 -17.26392 -16.76008 -16.05074 -15.82458 -15.21406 -14.98361 -14.67645 -14.63108 -14.37933 -14.12460 -13.82331 -13.29049 -13.14963 -12.96218 -12.75828 -12.44056 -12.30874 -12.07308 -11.77535 -11.73870 -11.61279 -11.20885 -11.06675 -10.95932 -10.93071 -10.77698 -10.64882 -10.61836 -10.37200 -10.18984 -10.04556 -9.75485 -9.57339 -8.99737 -8.89095 -6.94146 -5.78095 -3.06940 2.64848 3.19893 3.43139 3.48910 3.51229 4.35023 4.40637 4.46531 4.58711 4.73387 4.80451 4.93322 5.03621 5.11322 5.15956 5.21130 5.27974 5.30959 5.32553 5.36713 5.47331 5.51806 5.55042 5.56988 5.63690 5.67726 5.77869 5.84418 5.94939 5.97845 5.99355 6.03321 6.07005 6.09333 6.19254 6.29640 6.32188 6.32294 6.51979 6.78650 6.82920 7.51521 7.70101 8.24387 8.40963 9.52096 10.09258 10.43939 11.45018 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047221 B = 0.002190 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.816660 B =12782.465656 C =13158.259172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.064 4.064 9 H 0.078 0.922 10 C -0.142 4.142 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.730 5.730 14 C 0.122 3.878 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.072 0.928 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 0.554 28.697 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.082 4.082 9 H 0.096 0.904 10 C -0.182 4.182 11 C 0.296 3.704 12 O -0.417 6.417 13 N -0.382 5.382 14 C -0.002 4.002 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.090 0.910 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.372 -0.321 28.632 28.732 hybrid contribution -0.326 0.435 -1.094 1.222 sum 2.046 0.114 27.538 27.614 Atomic orbital electron populations 1.21931 0.95368 1.01985 1.01670 1.21179 0.95315 0.99560 0.94586 0.91221 1.21569 0.95582 1.00703 0.97167 1.21556 0.95645 1.00650 0.97933 1.21500 0.99984 0.99577 0.94436 1.21725 0.94631 1.00388 0.99079 1.20928 0.95966 0.99702 0.91643 0.90387 1.21857 1.03092 1.00283 0.92940 1.20709 0.79255 0.85823 0.84658 1.90668 1.39788 1.24626 1.86650 1.46150 1.57913 1.27928 1.06186 1.21338 1.00275 0.95390 0.83162 1.21939 1.01554 1.00148 0.93914 1.20524 0.96699 0.94478 0.85502 1.42351 1.66813 1.27944 1.00728 1.19297 1.28917 1.05143 0.83646 0.91030 1.24764 1.00972 0.97491 0.97961 1.69671 1.42471 1.17881 1.28308 0.86086 0.77368 0.78105 0.84474 1.20500 1.21843 1.21838 0.92606 0.92778 0.92343 0.91977 0.92192 0.92354 0.92192 0.92028 0.92310 0.89833 0.92769 0.89040 0.88668 0.76621 0.91484 0.91483 0.91349 0.91344 0.96073 0.96069 0.78312 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.85 37.16 0.33 -0.62 16 2 C -0.09 -0.61 2.25 -90.62 -0.20 -0.81 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.11 -0.77 5.20 -26.73 -0.14 -0.91 16 5 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 6 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 7 C -0.12 -1.15 4.95 -26.71 -0.13 -1.29 16 8 C -0.06 -0.55 1.37 -90.60 -0.12 -0.68 16 9 H 0.08 0.82 7.95 -51.93 -0.41 0.40 16 10 C -0.14 -1.17 4.96 -27.88 -0.14 -1.31 16 11 C 0.51 6.06 7.55 -10.99 -0.08 5.98 16 12 O -0.54 -8.40 13.97 5.55 0.08 -8.32 16 13 N -0.73 -8.24 5.56 -60.29 -0.33 -8.58 16 14 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16 15 C -0.14 -2.11 5.44 -26.73 -0.15 -2.25 16 16 C 0.16 3.14 6.26 -4.04 -0.03 3.11 16 17 N -0.73 -18.81 5.60 -59.91 -0.34 -19.14 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.34 6.32 -51.93 -0.33 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.02 5.95 -51.93 -0.31 0.71 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.64 6.17 -51.93 -0.32 0.32 16 39 H 0.40 3.51 8.47 -40.82 -0.35 3.16 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -32.36 365.99 -9.39 -41.75 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.76 Total: 5.70 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.25 Total: -6.80 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.05 Total: -55.41 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.08 Total: -8.32 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.36 -9.39 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177310638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.438 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds