Wall clock time and date at job start Tue Mar 31 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47796 * 2 1 4 4 C 1.53005 * 109.46899 * 120.00181 * 2 1 3 5 5 C 1.52992 * 109.47194 * 59.99601 * 4 2 1 6 6 C 1.53000 * 109.47362 * 60.00159 * 5 4 2 7 7 C 1.53005 * 109.46865 * 299.99664 * 6 5 4 8 8 C 1.53000 * 109.46918 * 239.99569 * 2 1 3 9 9 H 1.09001 * 109.47447 * 179.97438 * 8 2 1 10 10 C 1.53005 * 109.46865 * 60.00177 * 8 2 1 11 11 C 1.50703 * 109.47128 * 174.99683 * 10 8 2 12 12 O 1.21284 * 119.99540 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00069 * 179.97438 * 11 10 8 14 14 C 1.46506 * 119.99877 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46748 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47000 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.36939 * 119.99933 * 180.27608 * 17 16 15 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 16 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 16 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 H 1.08990 * 109.47522 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46761 * 300.00515 * 1 2 3 28 28 H 1.08996 * 109.46882 * 59.99687 * 1 2 3 29 29 H 1.08999 * 109.46845 * 299.99251 * 4 2 1 30 30 H 1.09001 * 109.46544 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47304 * 300.00030 * 5 4 2 32 32 H 1.09005 * 109.47192 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47498 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47016 * 59.99694 * 6 5 4 35 35 H 1.08993 * 109.47475 * 300.00155 * 7 6 5 36 36 H 1.08998 * 109.46891 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46630 * 55.00389 * 10 8 2 38 38 H 1.08998 * 109.47208 * 295.00169 * 10 8 2 39 39 H 0.96992 * 120.00150 * 0.02562 * 13 11 10 40 40 H 1.08995 * 109.46761 * 60.00339 * 14 13 11 41 41 H 1.09007 * 109.46829 * 300.00357 * 14 13 11 42 42 H 1.08995 * 109.47672 * 60.00334 * 15 14 13 43 43 H 1.09006 * 109.46819 * 299.99764 * 15 14 13 44 44 H 1.09009 * 109.46730 * 59.99606 * 16 15 14 45 45 H 1.08998 * 109.46846 * 300.00150 * 16 15 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 47 47 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0398 -2.8851 0.0001 7 6 1.5298 -2.1638 -1.2492 8 6 2.0400 -0.7214 -1.2492 9 1 3.1300 -0.7210 -1.2495 10 6 1.5299 -0.0001 -2.4985 11 6 2.1308 -0.6354 -3.7259 12 8 2.8917 -1.5731 -3.6125 13 7 1.8219 -0.1623 -4.9494 14 6 2.4056 -0.7803 -6.1426 15 6 1.8957 -0.0590 -7.3918 16 6 2.5048 -0.7048 -8.6380 17 7 2.0160 -0.0145 -9.8342 18 6 2.4238 -0.4240 -11.0756 19 1 3.1092 -1.2531 -11.1726 20 6 1.9562 0.2263 -12.2093 21 7 2.3486 -0.1670 -13.4025 22 14 0.7712 1.6605 -12.0414 23 1 1.5389 2.9271 -11.9345 24 1 -0.1112 1.7157 -13.2345 25 1 -0.0563 1.4787 -10.8218 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 1.6767 -0.2074 2.1392 30 1 3.1300 -0.7217 1.2490 31 1 0.4399 -2.1637 1.2493 32 1 1.8928 -2.6775 2.1395 33 1 1.6768 -3.9129 0.0003 34 1 3.1299 -2.8851 0.0001 35 1 0.4399 -2.1637 -1.2492 36 1 1.8935 -2.6774 -2.1391 37 1 1.8184 1.0502 -2.4548 38 1 0.4436 -0.0769 -2.5443 39 1 1.2131 0.5873 -5.0401 40 1 2.1171 -1.8305 -6.1858 41 1 3.4920 -0.7035 -6.0970 42 1 2.1845 0.9911 -7.3484 43 1 0.8093 -0.1355 -7.4375 44 1 2.2156 -1.7549 -8.6812 45 1 3.5911 -0.6287 -8.5924 46 1 1.4002 0.7298 -9.7470 47 1 2.0221 0.2876 -14.1947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177310639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:42 Heat of formation + Delta-G solvation = -63.854919 kcal Electronic energy + Delta-G solvation = -22046.622707 eV Core-core repulsion = 18842.019635 eV Total energy + Delta-G solvation = -3204.603072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43624 -38.87579 -36.17961 -34.46526 -33.15206 -32.03403 -31.88660 -30.16031 -28.20887 -26.61208 -25.09326 -22.72453 -22.34618 -21.69510 -21.30331 -20.17202 -18.68908 -17.63242 -16.99491 -16.19050 -15.94419 -15.78241 -15.14207 -14.71279 -14.56261 -14.35063 -14.04077 -13.74738 -13.46743 -13.17589 -12.88116 -12.82598 -12.77604 -12.45209 -12.05526 -11.95923 -11.84749 -11.62543 -11.32608 -11.20135 -11.04961 -11.01162 -10.83941 -10.72096 -10.46797 -10.40775 -10.20023 -10.17113 -9.67454 -9.59555 -9.07198 -8.91644 -7.25842 -5.78034 -3.14223 2.58838 3.12450 3.35097 3.37430 3.43331 4.31534 4.39178 4.41401 4.57250 4.70817 4.82598 4.92369 4.93344 5.00499 5.07303 5.09289 5.19710 5.22797 5.31102 5.34172 5.41517 5.49745 5.50747 5.52560 5.55872 5.65410 5.73858 5.79263 5.82604 5.88677 5.92032 5.94982 5.96434 6.00035 6.08953 6.13754 6.27985 6.30182 6.44637 6.67476 6.70663 7.43800 7.98088 8.17950 8.40742 9.19414 9.91490 10.11021 11.40319 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042998 B = 0.002342 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.034490 B =11955.006930 C =12364.856835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.064 4.064 9 H 0.077 0.923 10 C -0.140 4.140 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.731 5.731 14 C 0.122 3.878 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.757 5.757 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 1.221 31.937 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.083 4.083 9 H 0.096 0.904 10 C -0.180 4.180 11 C 0.295 3.705 12 O -0.415 6.415 13 N -0.383 5.383 14 C -0.002 4.002 15 C -0.180 4.180 16 C 0.032 3.968 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.893 0.398 31.819 32.059 hybrid contribution -1.186 1.493 -0.195 1.916 sum -5.079 1.890 31.623 32.084 Atomic orbital electron populations 1.22006 0.95402 1.02251 1.01443 1.21144 0.95932 0.98954 0.94597 0.91347 1.21537 1.00608 0.95742 0.97174 1.21590 1.00858 0.95605 0.97881 1.21493 1.00881 0.98646 0.94436 1.21744 1.00015 0.95121 0.99038 1.20898 1.00891 0.94866 0.91631 0.90430 1.21828 1.02158 1.01037 0.92950 1.20724 0.81438 0.83658 0.84639 1.90677 1.35937 1.28267 1.86618 1.46139 1.49355 1.36600 1.06209 1.21319 0.98440 0.97429 0.82975 1.21991 1.01302 1.00392 0.94283 1.20501 0.96652 0.95165 0.84435 1.42692 1.56207 1.38928 1.02442 1.19075 1.22873 1.13842 0.81749 0.89144 1.24698 1.00172 0.99347 0.95097 1.69700 1.48183 1.43388 0.96881 0.86507 0.81445 0.83477 0.76829 1.21070 1.21695 1.20409 0.91895 0.92981 0.92609 0.92189 0.92016 0.91855 0.92458 0.92325 0.92057 0.92442 0.89943 0.89045 0.88811 0.76706 0.91291 0.91287 0.91390 0.91413 0.95249 0.95178 0.80703 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.15 37.16 0.30 -0.60 16 2 C -0.09 -0.58 2.72 -90.62 -0.25 -0.82 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -0.74 5.45 -26.73 -0.15 -0.88 16 5 C -0.12 -0.83 5.65 -26.74 -0.15 -0.98 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.12 -1.11 4.67 -26.73 -0.12 -1.24 16 8 C -0.06 -0.53 1.61 -90.62 -0.15 -0.68 16 9 H 0.08 0.78 7.95 -51.93 -0.41 0.37 16 10 C -0.14 -1.08 4.67 -27.88 -0.13 -1.21 16 11 C 0.51 5.75 7.55 -10.98 -0.08 5.67 16 12 O -0.54 -8.10 13.96 5.55 0.08 -8.02 16 13 N -0.73 -7.68 5.56 -60.29 -0.33 -8.02 16 14 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 15 C -0.14 -1.99 5.44 -26.73 -0.15 -2.14 16 16 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 17 N -0.76 -18.06 5.41 -59.90 -0.32 -18.38 16 18 C -0.25 -7.05 10.47 -15.06 -0.16 -7.20 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 22 Si 0.89 22.03 27.74 -169.99 -4.71 17.32 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 6.54 -51.93 -0.34 -0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 36 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.59 6.71 -51.93 -0.35 0.24 16 39 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.36 8.26 5.53 -40.82 -0.23 8.03 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -33.18 356.29 -8.89 -42.07 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.41 Total: 5.07 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.33 Total: -6.65 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.12 Total: -55.16 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.18 -8.89 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177310639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.783 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds