Wall clock time and date at job start Tue Mar 31 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47796 * 2 1 4 4 C 1.53005 * 109.46899 * 120.00181 * 2 1 3 5 5 C 1.52992 * 109.47194 * 59.99601 * 4 2 1 6 6 C 1.53000 * 109.47362 * 60.00159 * 5 4 2 7 7 C 1.53005 * 109.46865 * 299.99664 * 6 5 4 8 8 C 1.53000 * 109.46918 * 239.99569 * 2 1 3 9 9 H 1.09001 * 109.47447 * 179.97438 * 8 2 1 10 10 C 1.53005 * 109.46865 * 60.00177 * 8 2 1 11 11 C 1.50703 * 109.47128 * 174.99683 * 10 8 2 12 12 O 1.21284 * 119.99540 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00069 * 179.97438 * 11 10 8 14 14 C 1.46506 * 119.99877 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46748 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47000 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.36939 * 119.99933 * 180.27608 * 17 16 15 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 16 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 16 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 H 1.08990 * 109.47522 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46761 * 300.00515 * 1 2 3 28 28 H 1.08996 * 109.46882 * 59.99687 * 1 2 3 29 29 H 1.08999 * 109.46845 * 299.99251 * 4 2 1 30 30 H 1.09001 * 109.46544 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47304 * 300.00030 * 5 4 2 32 32 H 1.09005 * 109.47192 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47498 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47016 * 59.99694 * 6 5 4 35 35 H 1.08993 * 109.47475 * 300.00155 * 7 6 5 36 36 H 1.08998 * 109.46891 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46630 * 55.00389 * 10 8 2 38 38 H 1.08998 * 109.47208 * 295.00169 * 10 8 2 39 39 H 0.96992 * 120.00150 * 0.02562 * 13 11 10 40 40 H 1.08995 * 109.46761 * 60.00339 * 14 13 11 41 41 H 1.09007 * 109.46829 * 300.00357 * 14 13 11 42 42 H 1.08995 * 109.47672 * 60.00334 * 15 14 13 43 43 H 1.09006 * 109.46819 * 299.99764 * 15 14 13 44 44 H 1.09009 * 109.46730 * 59.99606 * 16 15 14 45 45 H 1.08998 * 109.46846 * 300.00150 * 16 15 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 47 47 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0398 -2.8851 0.0001 7 6 1.5298 -2.1638 -1.2492 8 6 2.0400 -0.7214 -1.2492 9 1 3.1300 -0.7210 -1.2495 10 6 1.5299 -0.0001 -2.4985 11 6 2.1308 -0.6354 -3.7259 12 8 2.8917 -1.5731 -3.6125 13 7 1.8219 -0.1623 -4.9494 14 6 2.4056 -0.7803 -6.1426 15 6 1.8957 -0.0590 -7.3918 16 6 2.5048 -0.7048 -8.6380 17 7 2.0160 -0.0145 -9.8342 18 6 2.4238 -0.4240 -11.0756 19 1 3.1092 -1.2531 -11.1726 20 6 1.9562 0.2263 -12.2093 21 7 2.3486 -0.1670 -13.4025 22 14 0.7712 1.6605 -12.0414 23 1 1.5389 2.9271 -11.9345 24 1 -0.1112 1.7157 -13.2345 25 1 -0.0563 1.4787 -10.8218 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 1.6767 -0.2074 2.1392 30 1 3.1300 -0.7217 1.2490 31 1 0.4399 -2.1637 1.2493 32 1 1.8928 -2.6775 2.1395 33 1 1.6768 -3.9129 0.0003 34 1 3.1299 -2.8851 0.0001 35 1 0.4399 -2.1637 -1.2492 36 1 1.8935 -2.6774 -2.1391 37 1 1.8184 1.0502 -2.4548 38 1 0.4436 -0.0769 -2.5443 39 1 1.2131 0.5873 -5.0401 40 1 2.1171 -1.8305 -6.1858 41 1 3.4920 -0.7035 -6.0970 42 1 2.1845 0.9911 -7.3484 43 1 0.8093 -0.1355 -7.4375 44 1 2.2156 -1.7549 -8.6812 45 1 3.5911 -0.6287 -8.5924 46 1 1.4002 0.7298 -9.7470 47 1 2.0221 0.2876 -14.1947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177310639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:41 Heat of formation + Delta-G solvation = -85.731892 kcal Electronic energy + Delta-G solvation = -22047.571364 eV Core-core repulsion = 18842.019635 eV Total energy + Delta-G solvation = -3205.551729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21280 -39.62707 -37.61640 -35.92672 -33.99241 -33.65656 -32.53417 -31.72762 -28.94998 -27.41640 -26.40321 -24.09974 -23.20668 -22.71242 -22.48817 -21.10776 -19.64737 -19.27379 -17.89711 -17.16979 -16.91416 -16.52831 -16.44312 -16.03846 -15.67856 -15.34625 -15.05570 -14.82823 -14.71344 -14.36276 -13.96611 -13.77998 -13.74351 -13.40603 -13.21937 -12.89687 -12.71931 -12.54774 -12.47664 -12.36697 -12.16712 -12.08853 -12.01087 -11.89431 -11.81405 -11.60398 -11.13763 -11.04769 -10.99116 -10.77851 -10.51210 -10.03236 -9.33346 -8.04194 -5.39541 1.37776 1.43423 1.50776 1.72055 2.24410 2.48435 3.26660 3.55471 3.70036 3.78627 3.82463 4.03674 4.07061 4.23742 4.25581 4.28190 4.34110 4.44357 4.53025 4.53899 4.61969 4.69739 4.71104 4.75045 4.79809 4.84809 4.89236 4.94946 5.06662 5.13248 5.21146 5.23614 5.25739 5.27670 5.30860 5.35747 5.44586 5.46258 5.54717 5.62980 5.73257 5.73708 6.19248 6.63045 7.05960 7.34382 7.80279 8.01608 9.17254 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042998 B = 0.002342 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.034490 B =11955.006930 C =12364.856835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.062 4.062 9 H 0.053 0.947 10 C -0.131 4.131 11 C 0.504 3.496 12 O -0.582 6.582 13 N -0.721 5.721 14 C 0.131 3.869 15 C -0.121 4.121 16 C 0.153 3.847 17 N -0.758 5.758 18 C -0.243 4.243 19 H 0.052 0.948 20 C -0.069 4.069 21 N -0.985 5.985 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.245 1.245 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.416 0.584 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.369 0.631 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 3.692 34.394 35.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.081 4.081 9 H 0.072 0.928 10 C -0.171 4.171 11 C 0.292 3.708 12 O -0.462 6.462 13 N -0.374 5.374 14 C 0.006 3.994 15 C -0.159 4.159 16 C 0.027 3.973 17 N -0.404 5.404 18 C -0.374 4.374 19 H 0.070 0.930 20 C -0.260 4.260 21 N -0.635 5.635 22 Si 0.791 3.209 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.170 1.170 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.253 0.747 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.203 0.797 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.216 2.886 34.336 35.013 hybrid contribution -0.362 0.594 -0.951 1.178 sum -6.578 3.480 33.385 34.204 Atomic orbital electron populations 1.22002 0.94439 1.02201 1.02357 1.21113 0.96618 0.99053 0.93320 0.90349 1.21560 1.00205 0.95606 0.97829 1.21562 1.01211 0.95732 0.97029 1.21493 1.00054 0.98897 0.95136 1.21678 1.00450 0.95648 0.97896 1.20854 0.99512 0.94652 0.93112 0.92814 1.21866 1.03076 1.01752 0.90383 1.21424 0.80719 0.83021 0.85606 1.90674 1.37978 1.30310 1.87218 1.45989 1.49288 1.36830 1.05255 1.21029 0.97860 0.96891 0.83595 1.21754 1.01649 1.00624 0.91898 1.20663 0.96595 0.94999 0.85071 1.42652 1.56337 1.39426 1.02013 1.19044 1.21737 1.12517 0.84098 0.93011 1.25659 1.02808 1.03084 0.94489 1.69904 1.50222 1.45429 0.97942 0.85275 0.78855 0.79042 0.77775 1.20158 1.22244 1.16959 0.92405 0.92146 0.91674 0.90894 0.92813 0.91137 0.91950 0.92437 0.93430 0.91446 0.93161 0.86552 0.86589 0.74726 0.92495 0.92459 0.89880 0.90025 0.95942 0.95809 0.79722 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.15 71.98 0.59 -0.71 16 2 C -0.08 -0.88 2.72 -10.79 -0.03 -0.91 16 3 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.11 -1.29 5.45 30.59 0.17 -1.12 16 5 C -0.12 -1.44 5.65 30.59 0.17 -1.27 16 6 C -0.12 -1.94 5.92 30.60 0.18 -1.76 16 7 C -0.12 -2.14 4.67 30.60 0.14 -2.00 16 8 C -0.06 -0.96 1.61 -10.79 -0.02 -0.97 16 9 H 0.05 1.08 7.95 -2.39 -0.02 1.06 16 10 C -0.13 -1.68 4.67 29.85 0.14 -1.54 16 11 C 0.50 10.72 7.55 87.66 0.66 11.39 16 12 O -0.58 -17.77 13.96 -3.04 -0.04 -17.81 16 13 N -0.72 -13.49 5.56 -463.05 -2.57 -16.07 16 14 C 0.13 3.19 5.67 86.38 0.49 3.68 16 15 C -0.12 -3.10 5.44 30.59 0.17 -2.94 16 16 C 0.15 5.72 6.26 86.38 0.54 6.26 16 17 N -0.76 -35.24 5.41 -343.44 -1.86 -37.09 16 18 C -0.24 -14.13 10.47 84.03 0.88 -13.25 16 19 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 20 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 21 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 22 Si 0.96 44.72 27.74 68.60 1.90 46.62 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.25 -9.96 6.52 99.48 0.65 -9.31 16 26 H 0.06 0.56 4.81 -2.39 -0.01 0.55 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.44 6.54 -2.39 -0.02 0.42 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.78 6.43 -2.39 -0.02 0.76 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.05 6.43 -2.39 -0.02 1.03 16 36 H 0.05 1.24 5.95 -2.39 -0.01 1.23 16 37 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.12 1.02 6.71 -2.39 -0.02 1.01 16 39 H 0.42 5.02 8.47 -92.71 -0.79 4.23 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.37 15.79 5.53 -92.71 -0.51 15.27 16 47 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -74.25 356.29 1.87 -72.38 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.41 Total: 24.22 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.55 Total: -8.79 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -4.13 Total: -116.62 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.04 Total: -17.81 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Total: -74.25 1.87 -72.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177310639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.354 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds