Wall clock time and date at job start Tue Mar 31 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47297 * 2 1 4 4 C 1.52999 * 109.47329 * 120.00101 * 2 1 3 5 5 H 1.09004 * 109.47383 * 299.99918 * 4 2 1 6 6 C 1.52994 * 109.47457 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.47014 * 59.99725 * 4 2 1 8 8 C 1.50706 * 109.46995 * 185.00173 * 7 4 2 9 9 O 1.21281 * 120.00160 * 359.97438 * 8 7 4 10 10 N 1.34777 * 119.99667 * 180.02562 * 8 7 4 11 11 C 1.47425 * 125.65136 * 359.95409 * 10 8 7 12 12 C 1.54915 * 104.83334 * 204.16738 * 11 10 8 13 13 C 1.55165 * 101.57980 * 322.99105 * 12 11 10 14 14 H 1.08993 * 110.71917 * 277.13865 * 13 12 11 15 15 N 1.46496 * 110.71696 * 153.86336 * 13 12 11 16 16 C 1.36944 * 119.99797 * 91.48124 * 15 13 12 17 17 H 1.08000 * 119.99870 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99694 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99776 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00263 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47023 * 90.00426 * 20 18 16 22 22 H 1.48502 * 109.47064 * 209.99972 * 20 18 16 23 23 H 1.48496 * 109.47028 * 330.00274 * 20 18 16 24 24 C 1.47022 * 125.64528 * 180.02562 * 10 8 7 25 25 H 1.09000 * 110.01436 * 298.39230 * 24 10 8 26 26 C 1.53005 * 109.88592 * 59.48467 * 24 10 8 27 27 H 1.08992 * 109.47514 * 59.99668 * 1 2 3 28 28 H 1.08999 * 109.47022 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46821 * 299.99637 * 1 2 3 30 30 H 1.09003 * 109.47208 * 239.99994 * 2 1 3 31 31 H 1.09005 * 109.47107 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47077 * 300.00049 * 3 2 1 33 33 H 1.09004 * 109.46889 * 60.00404 * 3 2 1 34 34 H 1.09001 * 109.47829 * 180.02562 * 6 4 2 35 35 H 1.09003 * 109.47420 * 300.00100 * 6 4 2 36 36 H 1.09007 * 109.47114 * 60.00153 * 6 4 2 37 37 H 1.08997 * 109.47171 * 65.00634 * 7 4 2 38 38 H 1.09002 * 109.47527 * 305.00035 * 7 4 2 39 39 H 1.08997 * 110.36855 * 323.00479 * 11 10 8 40 40 H 1.08997 * 110.36655 * 85.33352 * 11 10 8 41 41 H 1.08995 * 111.00392 * 204.91661 * 12 11 10 42 42 H 1.09001 * 111.00387 * 81.05917 * 12 11 10 43 43 H 0.96998 * 120.00196 * 271.47234 * 15 13 12 44 44 H 0.96991 * 120.00156 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47167 * 177.80428 * 26 24 10 46 46 H 1.09000 * 109.46800 * 297.80932 * 26 24 10 47 47 H 1.09003 * 109.46659 * 57.80603 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5700 -0.7218 1.2489 7 6 1.5300 -2.1637 1.2492 8 6 1.9287 -2.8375 2.5370 9 8 2.5591 -2.2245 3.3722 10 7 1.5855 -4.1217 2.7599 11 6 0.8239 -4.9805 1.8349 12 6 0.1734 -6.0577 2.7385 13 6 1.2910 -6.3008 3.7871 14 1 2.0325 -7.0022 3.4048 15 7 0.7222 -6.7819 5.0486 16 6 0.5948 -8.1267 5.2734 17 1 0.9132 -8.8326 4.5206 18 6 0.0564 -8.5825 6.4689 19 7 -0.0657 -9.8751 6.6852 20 14 -0.4937 -7.3616 7.7712 21 1 -1.9196 -7.0110 7.5502 22 1 -0.3363 -7.9690 9.1172 23 1 0.3375 -6.1343 7.6817 24 6 1.9075 -4.8975 3.9665 25 1 2.9885 -4.9795 4.0799 26 6 1.3055 -4.2180 5.1982 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.9334 -1.2361 2.1386 35 1 3.9330 -1.2359 0.3589 36 1 3.9337 0.3058 1.2487 37 1 1.9646 -2.7028 0.4075 38 1 0.4436 -2.1651 1.1597 39 1 0.0559 -4.4001 1.3237 40 1 1.4932 -5.4462 1.1115 41 1 -0.0370 -6.9660 2.1741 42 1 -0.7308 -5.6758 3.2127 43 1 0.4360 -6.1479 5.7246 44 1 -0.4422 -10.1936 7.5203 45 1 1.5148 -4.8187 6.0832 46 1 1.7456 -3.2280 5.3184 47 1 0.2272 -4.1231 5.0701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178308711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:45 Heat of formation + Delta-G solvation = -35.970747 kcal Electronic energy + Delta-G solvation = -23338.218848 eV Core-core repulsion = 20134.824925 eV Total energy + Delta-G solvation = -3203.393924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.25921 -38.31818 -36.87672 -34.33241 -32.08351 -31.47320 -30.77407 -29.70331 -28.45710 -26.42790 -25.47217 -23.63996 -22.81741 -22.34300 -20.00864 -19.39708 -18.64594 -17.97598 -16.90709 -16.06302 -15.52864 -15.16016 -14.67210 -14.59415 -14.18483 -14.01428 -13.80319 -13.48533 -13.08453 -12.93980 -12.65132 -12.53914 -12.16780 -12.09322 -12.04058 -11.98738 -11.86785 -11.60435 -11.37690 -11.27369 -11.15450 -10.91602 -10.80330 -10.62557 -10.60222 -10.53566 -10.33070 -10.07583 -9.65347 -9.40779 -8.99493 -8.43958 -7.35448 -5.83655 -3.20379 2.78655 3.12224 3.33266 3.36384 3.42088 4.43572 4.53214 4.55895 4.63594 4.81050 4.90586 4.95514 5.14630 5.18869 5.25273 5.34392 5.39262 5.41694 5.42388 5.50711 5.51969 5.54698 5.59277 5.66890 5.70451 5.70953 5.83136 5.85532 5.89062 5.92838 5.99547 6.03041 6.10662 6.17946 6.30004 6.38454 6.40179 6.49016 6.57661 6.61909 6.83558 7.74205 7.91734 8.35074 8.35328 9.12688 9.84991 10.03911 11.34288 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034024 B = 0.003534 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.756568 B = 7920.730165 C = 8089.155182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.070 4.070 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.135 4.135 8 C 0.526 3.474 9 O -0.541 6.541 10 N -0.612 5.612 11 C 0.098 3.902 12 C -0.154 4.154 13 C 0.179 3.821 14 H 0.074 0.926 15 N -0.740 5.740 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.275 1.275 24 C 0.125 3.875 25 H 0.073 0.927 26 C -0.163 4.163 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.368 0.632 44 H 0.261 0.739 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 18.711 -15.326 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.088 4.088 5 H 0.095 0.905 6 C -0.211 4.211 7 C -0.175 4.175 8 C 0.315 3.685 9 O -0.419 6.419 10 N -0.346 5.346 11 C -0.025 4.025 12 C -0.195 4.195 13 C 0.068 3.932 14 H 0.092 0.908 15 N -0.384 5.384 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.709 3.291 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.201 1.201 24 C 0.021 3.979 25 H 0.091 0.909 26 C -0.221 4.221 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.204 0.796 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.646 18.837 -14.868 24.143 hybrid contribution -0.608 0.606 0.911 1.252 sum 2.039 19.444 -13.956 24.021 Atomic orbital electron populations 1.21934 0.95405 1.01859 1.01724 1.21168 0.95592 0.96325 0.98040 1.21879 1.01306 0.95822 1.01524 1.20928 0.96442 0.93357 0.98118 0.90463 1.22002 0.94802 1.01752 1.02585 1.21818 1.02861 0.96901 0.95923 1.20328 0.79264 0.80120 0.88790 1.90637 1.40504 1.63478 1.47317 1.48659 1.55234 1.11063 1.19637 1.22377 0.94752 0.92542 0.92867 1.23522 1.00294 0.97513 0.98170 1.21149 0.93413 0.91204 0.87455 0.90794 1.42960 1.74886 1.05082 1.15517 1.19075 1.35286 0.81662 1.01811 0.89034 1.24652 1.01000 0.95497 0.97617 1.69689 1.50589 1.11620 1.25882 0.86659 0.78896 0.81148 0.82420 1.20967 1.21534 1.20148 1.21848 0.99499 0.91963 0.84611 0.90867 1.22076 1.00762 1.01266 0.97992 0.92820 0.92393 0.92633 0.91269 0.92303 0.92960 0.92707 0.90600 0.93544 0.92790 0.89238 0.88911 0.91301 0.91495 0.90120 0.90866 0.79615 0.92937 0.90897 0.91673 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.85 37.16 0.33 -0.79 16 2 C -0.09 -0.73 2.51 -90.62 -0.23 -0.95 16 3 C -0.15 -1.09 8.84 37.16 0.33 -0.76 16 4 C -0.07 -0.69 1.62 -90.62 -0.15 -0.84 16 5 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 6 C -0.15 -1.62 8.58 37.15 0.32 -1.30 16 7 C -0.14 -1.37 3.96 -27.88 -0.11 -1.48 16 8 C 0.53 7.46 7.35 -10.98 -0.08 7.38 16 9 O -0.54 -9.34 12.87 5.56 0.07 -9.26 16 10 N -0.61 -8.79 3.08 -163.01 -0.50 -9.30 16 11 C 0.10 1.18 6.69 -2.53 -0.02 1.16 16 12 C -0.15 -2.35 6.77 -24.57 -0.17 -2.52 16 13 C 0.18 3.28 3.49 -66.09 -0.23 3.05 16 14 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 15 N -0.74 -16.83 4.74 -51.65 -0.24 -17.08 16 16 C -0.25 -6.75 10.44 -15.06 -0.16 -6.91 16 17 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -28.65 13.97 55.49 0.78 -27.87 16 20 Si 0.88 21.76 27.73 -169.99 -4.71 17.05 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.43 6.45 56.52 0.36 -6.07 16 24 C 0.12 2.10 3.48 -66.95 -0.23 1.87 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 C -0.16 -2.89 7.93 37.16 0.29 -2.59 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.41 6.32 -51.93 -0.33 0.08 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 1.01 5.95 -51.93 -0.31 0.70 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.51 6.43 -51.92 -0.33 0.18 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.83 5.88 -51.93 -0.31 0.53 16 39 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.37 8.33 2.92 -40.82 -0.12 8.21 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.07 1.39 6.69 -51.93 -0.35 1.04 16 46 H 0.06 1.16 6.77 -51.93 -0.35 0.81 16 47 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -30.96 353.95 -7.79 -38.75 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.31 Total: 6.91 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.53 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.03 Total: -54.24 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.96 -7.79 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178308711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.777 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds