Wall clock time and date at job start Tue Mar 31 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 C 1.53006 * 109.47337 * 119.99748 * 2 1 3 5 5 H 1.08993 * 109.47229 * 300.00188 * 4 2 1 6 6 C 1.53003 * 109.46543 * 60.00619 * 4 2 1 7 7 C 1.53003 * 109.46969 * 179.97438 * 4 2 1 8 8 C 1.50697 * 109.46624 * 174.99991 * 7 4 2 9 9 O 1.21283 * 120.00521 * 359.73045 * 8 7 4 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 4 11 11 C 1.47426 * 125.64631 * 359.75325 * 10 8 7 12 12 C 1.54906 * 104.82959 * 204.09278 * 11 10 8 13 13 C 1.55155 * 101.58202 * 322.98796 * 12 11 10 14 14 H 1.09001 * 110.72222 * 277.14273 * 13 12 11 15 15 N 1.46503 * 110.71980 * 153.86751 * 13 12 11 16 16 C 1.36941 * 120.00297 * 86.45509 * 15 13 12 17 17 H 1.08004 * 119.99604 * 0.02562 * 16 15 13 18 18 C 1.38803 * 120.00076 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00518 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99936 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47078 * 59.99755 * 20 18 16 22 22 H 1.48496 * 109.47167 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46831 * 300.00000 * 20 18 16 24 24 C 1.47018 * 125.64699 * 179.44586 * 10 8 7 25 25 H 1.09004 * 109.88164 * 298.39212 * 24 10 8 26 26 C 1.52996 * 109.88443 * 59.56251 * 24 10 8 27 27 H 1.08999 * 109.47100 * 299.99542 * 1 2 3 28 28 H 1.08995 * 109.47242 * 60.00448 * 1 2 3 29 29 H 1.09001 * 109.46447 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47605 * 240.00379 * 2 1 3 31 31 H 1.08995 * 109.47260 * 300.00086 * 3 2 1 32 32 H 1.09006 * 109.47193 * 60.00287 * 3 2 1 33 33 H 1.08996 * 109.47368 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47710 * 59.99864 * 6 4 2 35 35 H 1.09003 * 109.46521 * 180.02562 * 6 4 2 36 36 H 1.08997 * 109.46995 * 299.99068 * 6 4 2 37 37 H 1.09001 * 109.46782 * 55.00888 * 7 4 2 38 38 H 1.08993 * 109.47555 * 295.00445 * 7 4 2 39 39 H 1.09004 * 110.36390 * 322.92750 * 11 10 8 40 40 H 1.08999 * 110.36503 * 85.25107 * 11 10 8 41 41 H 1.08996 * 111.00691 * 81.06419 * 12 11 10 42 42 H 1.09005 * 111.00459 * 204.92032 * 12 11 10 43 43 H 0.97000 * 119.99733 * 266.45650 * 15 13 12 44 44 H 0.96996 * 120.00078 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47317 * 58.54428 * 26 24 10 46 46 H 1.09007 * 109.47202 * 178.54743 * 26 24 10 47 47 H 1.09001 * 109.46946 * 298.54455 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6768 -0.2074 2.1392 6 6 1.5302 -2.1638 1.2492 7 6 3.5701 -0.7217 1.2489 8 6 4.0725 -1.3221 2.5366 9 8 3.2844 -1.7068 3.3744 10 7 5.3976 -1.4261 2.7597 11 6 6.4612 -0.9994 1.8323 12 6 7.6934 -1.8534 2.2222 13 6 7.5503 -1.9202 3.7657 14 1 7.9646 -1.0255 4.2305 15 7 8.1935 -3.1257 4.2941 16 6 9.5298 -3.1139 4.5931 17 1 10.1095 -2.2156 4.4396 18 6 10.1392 -4.2563 5.0933 19 7 9.4327 -5.3508 5.2807 20 14 11.9620 -4.2399 5.5017 21 1 12.2281 -3.2088 6.5368 22 1 12.3660 -5.5730 6.0164 23 1 12.7408 -3.9246 4.2773 24 6 6.0218 -1.9781 3.9710 25 1 5.7394 -1.3814 4.8384 26 6 5.5806 -3.4298 4.1684 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.8935 -2.6776 0.3592 35 1 1.8932 -2.6774 2.1394 36 1 0.4402 -2.1638 1.2493 37 1 3.9337 0.3019 1.1592 38 1 3.9331 -1.3113 0.4071 39 1 6.1697 -1.2023 0.8017 40 1 6.6770 0.0608 1.9647 41 1 7.6347 -2.8483 1.7809 42 1 8.6201 -1.3552 1.9370 43 1 7.6727 -3.9323 4.4322 44 1 9.8586 -6.1490 5.6306 45 1 5.8613 -4.0169 3.2941 46 1 6.0671 -3.8403 5.0533 47 1 4.4990 -3.4662 4.2986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178308712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:48 Heat of formation + Delta-G solvation = -39.860515 kcal Electronic energy + Delta-G solvation = -23256.807257 eV Core-core repulsion = 20053.244661 eV Total energy + Delta-G solvation = -3203.562597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15086 -38.20283 -36.78220 -34.16653 -32.00998 -31.34550 -30.64203 -29.31550 -28.27152 -26.34702 -25.19541 -23.70616 -23.04749 -22.23947 -19.94745 -19.31519 -18.52920 -17.51378 -16.82432 -15.77594 -15.53987 -14.98513 -14.71268 -14.63020 -14.06872 -13.88561 -13.56941 -13.54597 -13.12180 -12.77769 -12.52701 -12.42515 -12.11224 -12.01885 -11.91610 -11.88058 -11.66610 -11.47831 -11.24082 -11.13945 -10.98070 -10.82897 -10.72719 -10.56919 -10.53009 -10.44228 -10.22562 -9.98493 -9.69969 -9.31693 -8.94781 -8.33290 -7.02675 -5.81843 -3.11733 2.87841 3.22664 3.41124 3.45943 3.46910 4.50325 4.54861 4.61273 4.68843 4.87798 4.98920 5.05944 5.24117 5.30715 5.36369 5.40770 5.45624 5.47256 5.55005 5.58836 5.61637 5.63461 5.65361 5.73853 5.75400 5.84145 5.89500 5.93401 6.03365 6.07887 6.12408 6.15669 6.24257 6.34476 6.35608 6.47595 6.57171 6.58743 6.74253 6.85887 7.00728 7.65201 7.85043 8.36628 8.44909 9.48228 10.03688 10.38676 11.40607 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041858 B = 0.003272 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.762044 B = 8555.565306 C = 8946.457080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.069 4.069 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.135 4.135 8 C 0.525 3.475 9 O -0.541 6.541 10 N -0.611 5.611 11 C 0.098 3.902 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.061 0.939 15 N -0.718 5.718 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.128 3.872 25 H 0.069 0.931 26 C -0.157 4.157 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.391 0.609 44 H 0.257 0.743 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.826 11.669 -11.969 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.088 4.088 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.175 4.175 8 C 0.314 3.686 9 O -0.420 6.420 10 N -0.345 5.345 11 C -0.025 4.025 12 C -0.195 4.195 13 C 0.061 3.939 14 H 0.079 0.921 15 N -0.361 5.361 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.025 3.975 25 H 0.087 0.913 26 C -0.215 4.215 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.229 0.771 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.141 11.461 -11.465 21.512 hybrid contribution 1.050 -0.259 0.113 1.087 sum -13.091 11.203 -11.352 20.634 Atomic orbital electron populations 1.21876 0.95221 1.01949 1.01467 1.21173 0.95879 0.96004 0.98112 1.21930 1.01167 0.96111 1.01657 1.20924 0.92629 0.97204 0.98027 0.90474 1.22004 1.00684 0.95808 1.02692 1.21814 0.97365 1.02265 0.96061 1.20299 0.80587 0.78846 0.88830 1.90637 1.54297 1.49824 1.47192 1.48676 1.04875 1.61233 1.19741 1.22360 0.88396 0.98686 0.93093 1.23543 0.95573 0.99784 1.00583 1.21173 0.88840 0.92259 0.91589 0.92080 1.42665 1.07764 1.09474 1.76206 1.19192 0.85347 0.97011 1.36023 0.91140 1.24753 0.98136 0.95954 1.01845 1.69647 1.35227 1.01940 1.51112 0.86250 0.85016 0.76644 0.78137 1.21218 1.21685 1.21237 1.21803 0.94055 0.95165 0.86525 0.91252 1.21988 1.01401 0.95308 1.02850 0.92724 0.92994 0.92282 0.91281 0.92872 0.92655 0.92398 0.93530 0.90531 0.92820 0.89001 0.89296 0.91436 0.91785 0.90712 0.90671 0.77089 0.93317 0.92616 0.90381 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.84 37.16 0.33 -0.81 16 2 C -0.09 -0.77 2.51 -90.62 -0.23 -1.00 16 3 C -0.15 -1.13 8.85 37.16 0.33 -0.80 16 4 C -0.07 -0.72 1.62 -90.61 -0.15 -0.87 16 5 H 0.08 0.93 7.95 -51.93 -0.41 0.51 16 6 C -0.15 -1.76 8.58 37.16 0.32 -1.44 16 7 C -0.14 -1.46 3.97 -27.88 -0.11 -1.57 16 8 C 0.53 7.88 7.34 -10.98 -0.08 7.80 16 9 O -0.54 -9.78 12.86 5.56 0.07 -9.71 16 10 N -0.61 -9.34 3.08 -163.01 -0.50 -9.84 16 11 C 0.10 1.26 6.69 -2.53 -0.02 1.25 16 12 C -0.15 -2.49 6.77 -24.59 -0.17 -2.66 16 13 C 0.17 3.33 3.45 -66.09 -0.23 3.11 16 14 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 15 N -0.72 -17.40 5.02 -51.64 -0.26 -17.66 16 16 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 20 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.13 2.30 3.49 -66.95 -0.23 2.06 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 C -0.16 -3.01 7.93 37.16 0.29 -2.71 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 6.32 -51.93 -0.33 0.08 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.09 5.96 -51.93 -0.31 0.78 16 36 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 37 H 0.09 0.85 6.17 -51.93 -0.32 0.53 16 38 H 0.09 0.87 7.84 -51.93 -0.41 0.46 16 39 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.39 10.05 4.94 -40.82 -0.20 9.85 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 46 H 0.08 1.62 6.74 -51.93 -0.35 1.27 16 47 H 0.06 1.15 6.74 -51.93 -0.35 0.80 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -30.18 357.15 -8.14 -38.32 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.35 Total: 8.27 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.76 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.04 Total: -54.41 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.18 -8.14 -38.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178308712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.541 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds