Wall clock time and date at job start Tue Mar 31 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 115.55057 * 2 1 4 4 C 1.53004 * 117.51585 * 214.30305 * 2 1 3 5 5 C 1.52996 * 117.50113 * 145.67457 * 2 1 3 6 6 H 1.09004 * 117.49876 * 215.02151 * 5 2 1 7 7 C 1.53004 * 117.50006 * 0.02562 * 5 2 1 8 8 C 1.50700 * 109.47208 * 184.99978 * 7 5 2 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 5 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47306 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47306 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47306 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47306 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47528 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00693 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99335 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00463 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99729 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47265 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47080 * 119.99989 * 22 20 18 25 25 H 1.48495 * 109.47361 * 240.00192 * 22 20 18 26 26 H 1.09009 * 109.46988 * 274.32716 * 1 2 3 27 27 H 1.08997 * 109.47709 * 34.32514 * 1 2 3 28 28 H 1.09003 * 109.47692 * 154.32981 * 1 2 3 29 29 H 1.08999 * 117.49343 * 145.02348 * 4 2 1 30 30 H 1.09002 * 117.49807 * 0.02562 * 4 2 1 31 31 H 1.09009 * 109.46730 * 64.99884 * 7 5 2 32 32 H 1.08998 * 109.46846 * 305.00429 * 7 5 2 33 33 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 34 34 H 1.08995 * 109.47421 * 299.99467 * 11 10 8 35 35 H 1.09001 * 109.47621 * 60.00103 * 11 10 8 36 36 H 1.09009 * 109.47378 * 299.99899 * 12 11 10 37 37 H 1.08993 * 109.47209 * 59.99808 * 12 11 10 38 38 H 1.08995 * 109.47215 * 299.99822 * 13 12 11 39 39 H 1.09001 * 109.47513 * 60.00266 * 13 12 11 40 40 H 1.09000 * 109.47527 * 300.00118 * 14 13 12 41 41 H 1.09001 * 109.47054 * 60.00027 * 14 13 12 42 42 H 1.08995 * 109.47215 * 299.99822 * 15 14 13 43 43 H 1.09001 * 109.47042 * 60.00020 * 15 14 13 44 44 H 1.09000 * 109.47527 * 300.00118 * 16 15 14 45 45 H 1.09001 * 109.47054 * 60.00027 * 16 15 14 46 46 H 0.97001 * 119.99454 * 359.97438 * 17 16 15 47 47 H 0.97004 * 119.99909 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7647 5 6 2.2364 -1.1207 0.7652 6 1 3.1712 -0.8746 1.2691 7 6 1.3589 -2.1562 1.4715 8 6 2.2301 -3.0966 2.2637 9 8 3.4345 -2.9531 2.2630 10 7 1.6714 -4.1008 2.9679 11 6 2.5189 -5.0186 3.7331 12 6 1.6417 -6.0570 4.4354 13 6 2.5266 -7.0152 5.2351 14 6 1.6494 -8.0532 5.9379 15 6 2.5343 -9.0111 6.7381 16 6 1.6571 -10.0495 7.4403 17 7 2.5044 -10.9670 8.2061 18 6 1.9369 -11.9872 8.9218 19 1 0.8645 -12.1157 8.9213 20 6 2.7397 -12.8563 9.6478 21 7 4.0465 -12.6999 9.6479 22 14 1.9654 -14.2475 10.6245 23 1 0.4900 -14.2065 10.4600 24 1 2.4823 -15.5482 10.1283 25 1 2.3081 -14.0943 12.0612 26 1 -0.3633 0.0775 1.0248 27 1 -0.3634 0.8486 -0.5794 28 1 -0.3634 -0.9262 -0.4452 29 1 3.1719 -0.8749 -1.2678 30 1 1.6118 -1.8584 -1.2684 31 1 0.7951 -2.7214 0.7293 32 1 0.6673 -1.6483 2.1437 33 1 0.7083 -4.2157 2.9681 34 1 3.2100 -5.5232 3.0581 35 1 3.0831 -4.4570 4.4777 36 1 0.9507 -5.5521 5.1106 37 1 1.0772 -6.6187 3.6912 38 1 3.2178 -7.5202 4.5604 39 1 3.0908 -6.4532 5.9794 40 1 0.9584 -7.5481 6.6127 41 1 1.0849 -8.6154 5.1939 42 1 3.2255 -9.5164 6.0636 43 1 3.0984 -8.4486 7.4821 44 1 0.9655 -9.5446 8.1148 45 1 1.0933 -10.6118 6.6960 46 1 3.4676 -10.8522 8.2056 47 1 4.6076 -13.3070 10.1555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179470907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:07 Heat of formation + Delta-G solvation = -42.784974 kcal Electronic energy + Delta-G solvation = -20579.865733 eV Core-core repulsion = 17376.176322 eV Total energy + Delta-G solvation = -3203.689411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18357 -38.20397 -36.78192 -35.38000 -33.94286 -32.01858 -30.69543 -29.67282 -28.59271 -26.72862 -24.09913 -22.44995 -21.99164 -21.39899 -20.74996 -20.64512 -19.62325 -17.62471 -16.96674 -16.38407 -16.24841 -15.78403 -15.40801 -14.64151 -14.51595 -14.29650 -13.99786 -13.50788 -13.47083 -13.36020 -13.22996 -12.83040 -12.70867 -12.44789 -12.34498 -11.96265 -11.70001 -11.67694 -11.35358 -11.18808 -10.91940 -10.73764 -10.71572 -10.42611 -10.35999 -10.30453 -10.25407 -10.05593 -9.91190 -9.63268 -9.36649 -8.84170 -6.87854 -5.73376 -3.01730 2.35780 2.82522 3.34855 3.45101 3.50251 3.52902 4.18506 4.28695 4.39608 4.53312 4.58028 4.65897 4.75370 4.83084 4.94342 4.97714 5.08283 5.17240 5.24294 5.31451 5.34683 5.39206 5.40491 5.47932 5.56864 5.57132 5.64731 5.70548 5.74972 5.81471 5.89208 5.95420 5.96972 6.14209 6.14910 6.34739 6.35356 6.42634 6.49644 6.92857 6.96877 7.17493 7.73149 7.93159 8.46012 9.56702 10.16487 10.50984 11.49848 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.071068 B = 0.001591 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.893255 B =17590.204653 C =17853.627512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.155 4.155 3 H 0.104 0.896 4 C -0.174 4.174 5 C -0.138 4.138 6 H 0.118 0.882 7 C -0.109 4.109 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.733 5.733 11 C 0.116 3.884 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 25.905 -20.461 34.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.173 4.173 3 H 0.122 0.878 4 C -0.211 4.211 5 C -0.156 4.156 6 H 0.136 0.864 7 C -0.149 4.149 8 C 0.298 3.702 9 O -0.415 6.415 10 N -0.385 5.385 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.840 25.887 -20.384 33.869 hybrid contribution -0.484 -0.895 0.590 1.176 sum -8.324 24.992 -19.794 32.950 Atomic orbital electron populations 1.21370 0.92848 1.02035 1.01878 1.22425 0.95375 0.94611 1.04922 0.87765 1.23176 1.02537 1.01378 0.94027 1.22134 1.01173 0.98396 0.93900 0.86421 1.21192 0.97993 0.96083 0.99630 1.20636 0.89085 0.81204 0.79249 1.90709 1.15213 1.72428 1.63140 1.46083 1.10846 1.31033 1.50546 1.21444 0.93529 0.90734 0.94978 1.21824 0.98689 0.96760 0.99546 1.21519 0.98182 0.96685 0.99073 1.21498 0.98137 0.96527 0.98953 1.21730 0.98642 0.97070 0.99031 1.20658 0.93235 0.90443 0.93219 1.42406 1.05877 1.32727 1.56932 1.19309 0.91976 1.04539 1.21167 0.91160 1.24751 0.95431 0.99820 1.01192 1.69675 1.02613 1.39884 1.46150 0.86106 0.78172 0.82166 0.79708 1.20567 1.21873 1.21867 0.92104 0.92130 0.92475 0.88757 0.88812 0.88816 0.88469 0.76588 0.91414 0.91414 0.91307 0.91314 0.91634 0.91634 0.92112 0.92112 0.92090 0.92082 0.96588 0.96599 0.78337 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 9.19 37.16 0.34 -0.18 16 2 C -0.16 -0.87 6.41 -90.62 -0.58 -1.45 16 3 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.17 -1.10 9.82 -26.73 -0.26 -1.36 16 5 C -0.14 -0.99 5.41 -90.62 -0.49 -1.48 16 6 H 0.12 1.09 7.31 -51.93 -0.38 0.71 16 7 C -0.11 -0.65 5.06 -27.88 -0.14 -0.79 16 8 C 0.51 4.75 7.83 -10.98 -0.09 4.66 16 9 O -0.54 -7.38 15.56 5.55 0.09 -7.29 16 10 N -0.73 -5.43 5.56 -60.30 -0.33 -5.77 16 11 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 12 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 13 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 14 C -0.11 -1.39 5.21 -26.73 -0.14 -1.52 16 15 C -0.13 -2.07 5.33 -26.73 -0.14 -2.22 16 16 C 0.15 3.16 6.26 -4.04 -0.03 3.14 16 17 N -0.74 -19.48 5.60 -59.91 -0.34 -19.81 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.06 0.23 7.83 -51.92 -0.41 -0.18 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.52 7.94 -51.93 -0.41 0.11 16 31 H 0.09 0.41 7.88 -51.92 -0.41 0.00 16 32 H 0.10 0.41 7.77 -51.93 -0.40 0.00 16 33 H 0.40 1.79 8.47 -40.82 -0.35 1.44 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.61 7.67 -40.82 -0.31 10.29 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -34.13 383.92 -10.14 -44.27 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.97 Total: 3.60 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.08 Total: -10.33 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.05 Total: -53.82 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.29 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.13 -10.14 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179470907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.487 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds