Wall clock time and date at job start Tue Mar 31 2020 06:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.08999 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.49968 * 215.00840 * 5 2 1 8 8 C 1.50701 * 109.47250 * 174.99987 * 7 5 2 9 9 O 1.21279 * 119.99778 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99959 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47177 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47033 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46721 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46721 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.46872 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47205 * 179.97438 * 16 15 14 18 18 C 1.36934 * 119.99746 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00655 * 359.97438 * 18 17 16 20 20 C 1.38821 * 119.99496 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00057 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46966 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46996 * 119.99689 * 22 20 18 25 25 H 1.48498 * 109.47022 * 240.00115 * 22 20 18 26 26 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 27 27 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 28 28 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 29 29 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.49942 * 144.97366 * 4 2 1 31 31 H 1.09002 * 109.46825 * 294.99320 * 7 5 2 32 32 H 1.08997 * 109.47412 * 54.99052 * 7 5 2 33 33 H 0.96994 * 119.99952 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47675 * 300.00089 * 11 10 8 35 35 H 1.09004 * 109.47000 * 59.99654 * 11 10 8 36 36 H 1.09002 * 109.47274 * 299.99989 * 12 11 10 37 37 H 1.08997 * 109.46890 * 60.00501 * 12 11 10 38 38 H 1.09002 * 109.46799 * 299.99933 * 13 12 11 39 39 H 1.08997 * 109.47156 * 60.00317 * 13 12 11 40 40 H 1.09002 * 109.46954 * 299.99255 * 14 13 12 41 41 H 1.08991 * 109.47376 * 59.99544 * 14 13 12 42 42 H 1.09002 * 109.46799 * 299.99351 * 15 14 13 43 43 H 1.08997 * 109.47156 * 59.99734 * 15 14 13 44 44 H 1.09002 * 109.47156 * 299.99472 * 16 15 14 45 45 H 1.09004 * 109.47378 * 59.99711 * 16 15 14 46 46 H 0.96995 * 119.99520 * 359.97438 * 17 16 15 47 47 H 0.96999 * 120.00374 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2685 7 6 3.5486 -0.7753 1.4723 8 6 4.0213 -1.9670 2.2645 9 8 3.3723 -2.9915 2.2640 10 7 5.1653 -1.8942 2.9733 11 6 5.6245 -3.0524 3.7439 12 6 6.9374 -2.7075 4.4496 13 6 7.4173 -3.9174 5.2539 14 6 8.7299 -3.5721 5.9601 15 6 9.2102 -4.7823 6.7638 16 6 10.5230 -4.4373 7.4696 17 7 10.9826 -5.5958 8.2397 18 6 12.1455 -5.5221 8.9589 19 1 12.7241 -4.6102 8.9583 20 6 12.5807 -6.6197 9.6891 21 7 11.8753 -7.7308 9.6903 22 14 14.1667 -6.5191 10.6709 23 1 14.7667 -5.1708 10.5051 24 1 13.8757 -6.7587 12.1072 25 1 15.1186 -7.5477 10.1802 26 1 -0.3634 -0.9269 -0.4438 27 1 -0.3633 0.0792 1.0246 28 1 -0.3634 0.8478 -0.5809 29 1 1.6112 -1.8584 -1.2685 30 1 3.1711 -0.8746 -1.2692 31 1 4.3020 -0.5102 0.7305 32 1 3.3883 0.0676 2.1445 33 1 5.6845 -1.0749 2.9733 34 1 4.8712 -3.3170 4.4860 35 1 5.7842 -3.8957 3.0718 36 1 7.6905 -2.4432 3.7072 37 1 6.7780 -1.8642 5.1216 38 1 6.6643 -4.1820 5.9962 39 1 7.5768 -4.7604 4.5816 40 1 9.4831 -3.3073 5.2180 41 1 8.5701 -2.7292 6.6323 42 1 8.4571 -5.0475 7.5060 43 1 9.3702 -5.6249 6.0912 44 1 11.2759 -4.1722 6.7272 45 1 10.3635 -3.5944 8.1422 46 1 10.4631 -6.4149 8.2400 47 1 12.1791 -8.4977 10.2007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179470908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:10 Heat of formation + Delta-G solvation = -43.486860 kcal Electronic energy + Delta-G solvation = -20475.080187 eV Core-core repulsion = 17271.360340 eV Total energy + Delta-G solvation = -3203.719847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15164 -38.12031 -36.78168 -35.37995 -33.94349 -32.05650 -31.01846 -29.83191 -28.09859 -26.64473 -24.08822 -22.44904 -21.87674 -21.28864 -20.77166 -20.64657 -20.23056 -17.33437 -16.95580 -16.45711 -16.30258 -15.62146 -15.21885 -14.74998 -14.63041 -14.40395 -13.78983 -13.54310 -13.46139 -13.35060 -13.20042 -12.78296 -12.68889 -12.54142 -12.34230 -11.84921 -11.75759 -11.69435 -11.35515 -11.18882 -10.91950 -10.73788 -10.71595 -10.43661 -10.42345 -10.30351 -10.25432 -10.02176 -9.90408 -9.63153 -9.36829 -8.84113 -6.87835 -5.73339 -3.01680 2.35561 2.81743 3.34485 3.45106 3.50259 3.52906 4.17056 4.29971 4.39528 4.54409 4.63077 4.67519 4.75322 4.84347 4.94518 4.96389 5.06711 5.19098 5.24489 5.35388 5.36300 5.39236 5.40401 5.45005 5.56865 5.59932 5.64712 5.70502 5.74899 5.80569 5.93443 5.96160 5.96951 6.14199 6.14888 6.34735 6.35351 6.42631 6.49639 6.92856 6.96890 7.17319 7.73196 7.92928 8.46003 9.56732 10.16506 10.51044 11.49889 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.084170 B = 0.001548 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.582138 B =18077.775959 C =18233.290159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.154 4.154 3 H 0.103 0.897 4 C -0.174 4.174 5 C -0.138 4.138 6 H 0.118 0.882 7 C -0.111 4.111 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.733 5.733 11 C 0.116 3.884 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.366 18.395 -20.558 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.156 4.156 6 H 0.136 0.864 7 C -0.151 4.151 8 C 0.299 3.701 9 O -0.415 6.415 10 N -0.385 5.385 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.680 17.707 -20.481 34.069 hybrid contribution 1.103 0.100 0.595 1.257 sum -19.577 17.808 -19.886 33.103 Atomic orbital electron populations 1.21365 0.92733 1.02000 1.01971 1.22431 0.95465 0.94454 1.04882 0.87869 1.23228 1.02572 1.01271 0.94025 1.22178 0.97644 1.01937 0.93880 0.86371 1.21225 0.97329 0.96826 0.99672 1.20613 0.80473 0.89777 0.79276 1.90708 1.55463 1.32054 1.63234 1.46083 1.25146 1.17117 1.50166 1.21447 0.96089 0.88271 0.94880 1.21825 0.95739 0.99737 0.99519 1.21522 0.97885 0.97016 0.99035 1.21499 0.96022 0.98668 0.98932 1.21731 0.98280 0.97455 0.99005 1.20660 0.92518 0.91210 0.93176 1.42405 1.26838 1.12121 1.56573 1.19310 0.98835 0.97898 1.20946 0.91161 1.24752 0.99168 0.96094 1.01163 1.69672 1.39537 1.03091 1.46029 0.86111 0.83151 0.77177 0.79740 1.20561 1.21866 1.21872 0.92458 0.92119 0.92158 0.88695 0.88887 0.88794 0.88467 0.76583 0.91404 0.91418 0.91316 0.91303 0.91634 0.91631 0.92116 0.92104 0.92083 0.92088 0.96588 0.96594 0.78336 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.19 37.16 0.38 -0.26 16 2 C -0.15 -0.87 6.12 -90.62 -0.56 -1.42 16 3 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.17 -1.10 9.83 -26.70 -0.26 -1.36 16 5 C -0.14 -0.99 5.14 -90.58 -0.47 -1.46 16 6 H 0.12 1.11 7.30 -51.93 -0.38 0.73 16 7 C -0.11 -0.65 5.98 -27.88 -0.17 -0.82 16 8 C 0.51 4.74 7.83 -10.99 -0.09 4.66 16 9 O -0.54 -7.37 15.56 5.56 0.09 -7.28 16 10 N -0.73 -5.43 5.56 -60.29 -0.33 -5.77 16 11 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 12 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 13 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 14 C -0.11 -1.39 5.21 -26.73 -0.14 -1.53 16 15 C -0.13 -2.07 5.33 -26.73 -0.14 -2.22 16 16 C 0.15 3.16 6.26 -4.04 -0.03 3.14 16 17 N -0.74 -19.48 5.60 -59.91 -0.34 -19.81 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.61 8.05 -51.92 -0.42 0.19 16 30 H 0.09 0.50 8.04 -51.93 -0.42 0.09 16 31 H 0.09 0.39 7.88 -51.93 -0.41 -0.02 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 1.79 8.47 -40.82 -0.35 1.44 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.61 7.67 -40.82 -0.31 10.29 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -34.12 385.97 -10.08 -44.21 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -9.00 Total: 3.70 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.02 Total: -10.40 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.05 Total: -53.82 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.12 -10.08 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179470908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.723 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds