Wall clock time and date at job start Tue Mar 31 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.56329 * 2 1 4 4 C 1.53075 * 117.49362 * 145.70419 * 2 1 3 5 5 C 1.53002 * 117.49860 * 214.30673 * 2 1 3 6 6 H 1.08999 * 117.49837 * 0.02765 * 5 2 1 7 7 C 1.52997 * 117.49884 * 145.02247 * 5 2 1 8 8 C 1.50703 * 109.47084 * 184.91505 * 7 5 2 9 9 O 1.21273 * 119.99963 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99944 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99872 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46840 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47482 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47452 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47414 * 180.02562 * 16 15 14 18 18 C 1.36936 * 120.00184 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99612 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00175 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99730 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47588 * 89.99960 * 22 20 18 24 24 H 1.48500 * 109.47611 * 210.00395 * 22 20 18 25 25 H 1.48504 * 109.47257 * 330.00185 * 22 20 18 26 26 H 1.09002 * 109.47055 * 205.69500 * 1 2 3 27 27 H 1.08998 * 109.47132 * 325.69139 * 1 2 3 28 28 H 1.09003 * 109.47182 * 85.69007 * 1 2 3 29 29 H 1.09003 * 117.49651 * 0.02562 * 4 2 1 30 30 H 1.08994 * 117.51902 * 214.95831 * 4 2 1 31 31 H 1.08998 * 109.47624 * 64.91095 * 7 5 2 32 32 H 1.09002 * 109.47045 * 304.91471 * 7 5 2 33 33 H 0.97005 * 119.99680 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46813 * 60.00258 * 11 10 8 35 35 H 1.08992 * 109.47397 * 300.00319 * 11 10 8 36 36 H 1.09002 * 109.47398 * 300.00326 * 12 11 10 37 37 H 1.09001 * 109.47194 * 60.00507 * 12 11 10 38 38 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 39 39 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 40 40 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 41 41 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00216 * 15 14 13 43 43 H 1.09001 * 109.47289 * 60.00300 * 15 14 13 44 44 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 45 45 H 1.09001 * 109.46812 * 59.99783 * 16 15 14 46 46 H 0.97006 * 119.99677 * 359.97438 * 17 16 15 47 47 H 0.97001 * 119.99542 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1218 0.7651 5 6 2.2364 -1.1211 -0.7649 6 1 1.6112 -1.8583 -1.2685 7 6 3.5490 -0.7761 -1.4714 8 6 4.0227 -1.9687 -2.2615 9 8 3.3747 -2.9938 -2.2594 10 7 5.1667 -1.8961 -2.9705 11 6 5.6275 -3.0557 -3.7381 12 6 6.9393 -2.7102 -4.4457 13 6 7.4203 -3.9209 -5.2479 14 6 8.7324 -3.5758 -5.9549 15 6 9.2137 -4.7867 -6.7566 16 6 10.5262 -4.4417 -7.4632 17 7 10.9868 -5.6010 -8.2313 18 6 12.1490 -5.5273 -8.9518 19 1 12.7262 -4.6145 -8.9533 20 6 12.5856 -6.6260 -9.6792 21 7 11.8823 -7.7385 -9.6768 22 14 14.1713 -6.5255 -10.6614 23 1 15.3100 -6.9507 -9.8081 24 1 14.0785 -7.4187 -11.8441 25 1 14.3862 -5.1272 -11.1128 26 1 -0.3633 -0.9261 0.4456 27 1 -0.3633 0.8488 0.5792 28 1 -0.3634 0.0772 -1.0248 29 1 1.6113 -1.8596 1.2678 30 1 3.1719 -0.8766 1.2683 31 1 4.3017 -0.5094 -0.7296 32 1 3.3886 0.0657 -2.1450 33 1 5.6848 -1.0760 -2.9724 34 1 4.8746 -3.3230 -4.4796 35 1 5.7883 -3.8970 -3.0641 36 1 6.7780 -1.8689 -5.1198 37 1 7.6924 -2.4426 -3.7045 38 1 7.5815 -4.7625 -4.5741 39 1 6.6672 -4.1882 -5.9891 40 1 8.5716 -2.7341 -6.6287 41 1 9.4854 -3.3089 -5.2134 42 1 9.3746 -5.6281 -6.0826 43 1 8.4609 -5.0541 -7.4982 44 1 10.3657 -3.6002 -8.1372 45 1 11.2789 -4.1746 -6.7214 46 1 10.4684 -6.4210 -8.2296 47 1 12.1872 -8.5061 -10.1854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179470909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:13 Heat of formation + Delta-G solvation = -43.410663 kcal Electronic energy + Delta-G solvation = -20475.278290 eV Core-core repulsion = 17271.561748 eV Total energy + Delta-G solvation = -3203.716543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15234 -38.11977 -36.78164 -35.37880 -33.94230 -32.05514 -31.01783 -29.83122 -28.09873 -26.64316 -24.08625 -22.44688 -21.87633 -21.28815 -20.77158 -20.64535 -20.22980 -17.33385 -16.95349 -16.45720 -16.30234 -15.62088 -15.21880 -14.75004 -14.62849 -14.40333 -13.78979 -13.54067 -13.46200 -13.34973 -13.19955 -12.78242 -12.68853 -12.54164 -12.34068 -11.84957 -11.75751 -11.69389 -11.35509 -11.18529 -10.91161 -10.72971 -10.71271 -10.44109 -10.42541 -10.30920 -10.25198 -10.03316 -9.91338 -9.62614 -9.36789 -8.83420 -6.87715 -5.73051 -3.01436 2.35604 2.81745 3.34496 3.45603 3.50234 3.52366 4.17085 4.29989 4.39490 4.54493 4.63215 4.67627 4.75349 4.84345 4.94549 4.96444 5.06718 5.19147 5.24519 5.35376 5.36337 5.39288 5.40473 5.45046 5.56970 5.59966 5.64795 5.70599 5.74962 5.80596 5.93485 5.96203 5.97012 6.14260 6.14930 6.34807 6.35431 6.42798 6.49735 6.92966 6.97012 7.17321 7.72785 7.92952 8.46353 9.56944 10.16720 10.51242 11.50108 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.084181 B = 0.001549 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.538066 B =18077.242256 C =18232.773094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.154 4.154 3 H 0.103 0.897 4 C -0.174 4.174 5 C -0.138 4.138 6 H 0.118 0.882 7 C -0.111 4.111 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.733 5.733 11 C 0.116 3.884 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.389 18.384 20.493 34.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.156 4.156 6 H 0.136 0.864 7 C -0.151 4.151 8 C 0.299 3.701 9 O -0.415 6.415 10 N -0.385 5.385 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.708 17.690 20.407 34.032 hybrid contribution 1.113 0.109 -0.584 1.262 sum -19.595 17.798 19.823 33.071 Atomic orbital electron populations 1.21364 0.92730 1.02000 1.01971 1.22443 0.95460 0.94438 1.04899 0.87862 1.23228 1.02564 1.01259 0.94042 1.22168 0.97634 1.01927 0.93903 0.86380 1.21226 0.97322 0.96817 0.99693 1.20613 0.80470 0.89796 0.79260 1.90707 1.55508 1.32046 1.63193 1.46088 1.25171 1.17002 1.50259 1.21445 0.96082 0.88238 0.94917 1.21824 0.95751 0.99733 0.99509 1.21518 0.97882 0.97010 0.99048 1.21497 0.96022 0.98665 0.98936 1.21732 0.98281 0.97447 0.99012 1.20658 0.92510 0.91204 0.93183 1.42397 1.26913 1.11993 1.56622 1.19263 0.98918 0.97811 1.21075 0.91224 1.24749 0.99158 0.96078 1.01165 1.69668 1.39583 1.02959 1.46132 0.86177 0.83321 0.77090 0.79542 1.21734 1.21752 1.20781 0.92457 0.92157 0.92119 0.88695 0.88887 0.88792 0.88470 0.76582 0.91411 0.91412 0.91305 0.91314 0.91639 0.91629 0.92107 0.92116 0.92091 0.92084 0.96597 0.96602 0.78333 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.19 37.16 0.38 -0.26 16 2 C -0.15 -0.87 6.13 -90.58 -0.56 -1.43 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.17 -1.10 9.83 -26.69 -0.26 -1.36 16 5 C -0.14 -0.99 5.13 -90.62 -0.46 -1.46 16 6 H 0.12 1.11 7.31 -51.93 -0.38 0.73 16 7 C -0.11 -0.65 5.98 -27.88 -0.17 -0.82 16 8 C 0.51 4.75 7.83 -10.98 -0.09 4.66 16 9 O -0.54 -7.37 15.56 5.56 0.09 -7.28 16 10 N -0.73 -5.44 5.56 -60.30 -0.33 -5.77 16 11 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 12 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 13 C -0.12 -1.18 5.21 -26.74 -0.14 -1.32 16 14 C -0.11 -1.39 5.21 -26.74 -0.14 -1.53 16 15 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 16 C 0.15 3.17 6.26 -4.04 -0.03 3.14 16 17 N -0.74 -19.48 5.60 -59.91 -0.34 -19.82 16 18 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.61 8.05 -51.93 -0.42 0.19 16 30 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 31 H 0.09 0.39 7.88 -51.93 -0.41 -0.02 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 1.79 8.47 -40.82 -0.35 1.44 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 47 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -34.10 385.96 -10.08 -44.19 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -9.00 Total: 3.75 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.01 Total: -10.42 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.05 Total: -53.83 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.10 -10.08 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179470909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.778 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds