Wall clock time and date at job start Tue Mar 31 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 115.55217 * 2 1 4 4 C 1.53079 * 117.53402 * 145.71515 * 2 1 3 5 5 C 1.53006 * 117.50025 * 214.33415 * 2 1 3 6 6 H 1.08992 * 117.50404 * 144.97602 * 5 2 1 7 7 C 1.53006 * 117.49660 * 359.96912 * 5 2 1 8 8 C 1.50696 * 109.46617 * 175.09018 * 7 5 2 9 9 O 1.21284 * 120.00427 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99877 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00447 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47294 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47131 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 14 18 18 C 1.36930 * 120.00258 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99225 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47411 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46826 * 120.00327 * 22 20 18 25 25 H 1.48495 * 109.47136 * 239.99966 * 22 20 18 26 26 H 1.09009 * 109.47044 * 205.67173 * 1 2 3 27 27 H 1.08997 * 109.47152 * 325.67003 * 1 2 3 28 28 H 1.08997 * 109.47245 * 85.67302 * 1 2 3 29 29 H 1.09000 * 117.50959 * 359.97438 * 4 2 1 30 30 H 1.08995 * 117.49441 * 214.95406 * 4 2 1 31 31 H 1.09001 * 109.46726 * 55.09312 * 7 5 2 32 32 H 1.08996 * 109.47165 * 295.09228 * 7 5 2 33 33 H 0.97006 * 119.99798 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47059 * 60.00204 * 11 10 8 35 35 H 1.09004 * 109.47074 * 300.00161 * 11 10 8 36 36 H 1.09001 * 109.46832 * 60.00150 * 12 11 10 37 37 H 1.09000 * 109.47611 * 300.00447 * 12 11 10 38 38 H 1.08998 * 109.46509 * 60.00429 * 13 12 11 39 39 H 1.09001 * 109.46801 * 300.00272 * 13 12 11 40 40 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 41 41 H 1.09004 * 109.47261 * 300.00303 * 14 13 12 42 42 H 1.09001 * 109.46997 * 60.00426 * 15 14 13 43 43 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 44 44 H 1.09001 * 109.47289 * 60.00050 * 16 15 14 45 45 H 1.09004 * 109.47261 * 300.00306 * 16 15 14 46 46 H 0.97001 * 119.99251 * 0.02562 * 17 16 15 47 47 H 0.97000 * 119.99950 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2376 -1.1216 0.7646 5 6 2.2365 -1.1207 -0.7655 6 1 3.1711 -0.8746 -1.2693 7 6 1.3588 -2.1560 -1.4718 8 6 2.2302 -3.0976 -2.2623 9 8 3.4347 -2.9550 -2.2606 10 7 1.6712 -4.0983 -2.9712 11 6 2.5182 -5.0141 -3.7393 12 6 1.6406 -6.0493 -4.4457 13 6 2.5253 -7.0054 -5.2484 14 6 1.6477 -8.0402 -5.9553 15 6 2.5322 -8.9958 -6.7585 16 6 1.6546 -10.0310 -7.4648 17 7 2.5017 -10.9465 -8.2335 18 6 1.9337 -11.9630 -8.9538 19 1 0.8611 -12.0897 -8.9557 20 6 2.7362 -12.8301 -9.6825 21 7 4.0432 -12.6753 -9.6806 22 14 1.9613 -14.2173 -10.6646 23 1 0.4858 -14.1751 -10.5017 24 1 2.3050 -14.0592 -12.1006 25 1 2.4770 -15.5201 -10.1728 26 1 -0.3633 -0.9263 0.4452 27 1 -0.3633 0.8486 0.5795 28 1 -0.3633 0.0775 -1.0247 29 1 1.6131 -1.8594 1.2682 30 1 3.1729 -0.8755 1.2673 31 1 0.6683 -1.6482 -2.1451 32 1 0.7939 -2.7202 -0.7298 33 1 0.7078 -4.2122 -2.9729 34 1 3.2081 -5.5223 -3.0656 35 1 3.0839 -4.4500 -4.4810 36 1 0.9504 -5.5414 -5.1194 37 1 1.0752 -6.6133 -3.7038 38 1 3.2157 -7.5132 -4.5750 39 1 3.0903 -6.4410 -5.9903 40 1 0.9575 -7.5320 -6.6287 41 1 1.0823 -8.6045 -5.2136 42 1 3.2227 -9.5041 -6.0854 43 1 3.0972 -8.4312 -7.5002 44 1 0.9638 -9.5232 -8.1378 45 1 1.0899 -10.5956 -6.7228 46 1 3.4650 -10.8324 -8.2320 47 1 4.6041 -13.2814 -10.1895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179470910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:15 Heat of formation + Delta-G solvation = -42.764165 kcal Electronic energy + Delta-G solvation = -20579.693145 eV Core-core repulsion = 17376.004637 eV Total energy + Delta-G solvation = -3203.688508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18267 -38.19866 -36.78135 -35.37966 -33.94241 -32.01810 -30.69508 -29.67273 -28.59271 -26.72831 -24.09854 -22.44996 -21.99205 -21.39880 -20.74970 -20.64487 -19.62335 -17.62390 -16.96685 -16.38508 -16.24791 -15.78448 -15.40587 -14.64150 -14.51534 -14.29632 -13.99863 -13.50696 -13.47069 -13.35918 -13.23108 -12.83029 -12.70849 -12.44793 -12.34475 -11.96359 -11.69980 -11.67734 -11.35375 -11.18792 -10.91938 -10.73764 -10.71570 -10.42627 -10.35739 -10.30535 -10.25402 -10.05601 -9.91202 -9.63221 -9.36623 -8.84152 -6.87850 -5.73369 -3.01701 2.35792 2.82468 3.34773 3.45106 3.50257 3.52924 4.18485 4.28717 4.39470 4.53327 4.58036 4.65916 4.75370 4.83077 4.94311 4.97745 5.08248 5.17257 5.24290 5.31473 5.34687 5.39204 5.40494 5.47945 5.56857 5.57144 5.64726 5.70539 5.74965 5.81478 5.89231 5.95406 5.96966 6.14212 6.14922 6.34738 6.35350 6.42622 6.49630 6.92850 6.96868 7.17478 7.73133 7.93157 8.46017 9.56698 10.16475 10.51014 11.49867 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.071097 B = 0.001591 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.735736 B =17590.656480 C =17854.553220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.155 4.155 3 H 0.104 0.896 4 C -0.174 4.174 5 C -0.137 4.137 6 H 0.118 0.882 7 C -0.109 4.109 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.733 5.733 11 C 0.116 3.884 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 25.848 20.537 34.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.173 4.173 3 H 0.122 0.878 4 C -0.211 4.211 5 C -0.156 4.156 6 H 0.136 0.864 7 C -0.149 4.149 8 C 0.298 3.702 9 O -0.415 6.415 10 N -0.385 5.385 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.833 25.830 20.461 33.870 hybrid contribution -0.484 -0.892 -0.594 1.176 sum -8.317 24.937 19.867 32.950 Atomic orbital electron populations 1.21369 0.92846 1.02035 1.01878 1.22438 0.95370 0.94603 1.04924 0.87766 1.23188 1.02531 1.01370 0.94033 1.22136 1.01165 0.98394 0.93900 0.86429 1.21190 0.97991 0.96062 0.99653 1.20636 0.89088 0.81191 0.79259 1.90709 1.15211 1.72353 1.63217 1.46085 1.10830 1.31351 1.50244 1.21445 0.93533 0.90789 0.94917 1.21825 0.98687 0.96791 0.99516 1.21521 0.98181 0.96715 0.99041 1.21498 0.98136 0.96557 0.98925 1.21730 0.98642 0.97096 0.99005 1.20660 0.93235 0.90479 0.93185 1.42406 1.05865 1.33067 1.56601 1.19310 0.91959 1.04790 1.20930 0.91160 1.24754 0.95433 0.99844 1.01172 1.69676 1.02605 1.39955 1.46089 0.86104 0.78172 0.82137 0.79732 1.20568 1.21875 1.21868 0.92475 0.92129 0.92102 0.88811 0.88756 0.88464 0.88819 0.76590 0.91423 0.91406 0.91310 0.91312 0.91634 0.91633 0.92112 0.92111 0.92089 0.92082 0.96590 0.96595 0.78335 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 9.20 37.16 0.34 -0.18 16 2 C -0.16 -0.87 6.41 -90.58 -0.58 -1.45 16 3 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.17 -1.10 9.83 -26.68 -0.26 -1.36 16 5 C -0.14 -0.99 5.41 -90.61 -0.49 -1.48 16 6 H 0.12 1.09 7.31 -51.93 -0.38 0.71 16 7 C -0.11 -0.65 5.06 -27.88 -0.14 -0.79 16 8 C 0.51 4.75 7.83 -10.99 -0.09 4.66 16 9 O -0.54 -7.38 15.56 5.55 0.09 -7.29 16 10 N -0.73 -5.43 5.56 -60.30 -0.33 -5.77 16 11 C 0.12 1.02 5.67 -4.05 -0.02 1.00 16 12 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 13 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 14 C -0.11 -1.39 5.21 -26.73 -0.14 -1.52 16 15 C -0.13 -2.07 5.33 -26.73 -0.14 -2.22 16 16 C 0.15 3.16 6.26 -4.04 -0.03 3.14 16 17 N -0.74 -19.48 5.60 -59.90 -0.34 -19.81 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 19 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.06 0.22 7.90 -51.92 -0.41 -0.19 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.23 7.84 -51.93 -0.41 -0.18 16 29 H 0.09 0.52 7.94 -51.93 -0.41 0.11 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.41 7.77 -51.93 -0.40 0.00 16 32 H 0.09 0.41 7.88 -51.93 -0.41 0.00 16 33 H 0.40 1.79 8.47 -40.82 -0.35 1.44 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.61 7.67 -40.82 -0.31 10.29 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -34.13 383.94 -10.14 -44.27 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.97 Total: 3.60 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.08 Total: -10.34 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.05 Total: -53.82 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.29 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.13 -10.14 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179470910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.509 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds