Wall clock time and date at job start Tue Mar 31 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 115.55217 * 2 1 4 4 C 1.53079 * 117.53402 * 145.71515 * 2 1 3 5 5 C 1.53006 * 117.50025 * 214.33415 * 2 1 3 6 6 H 1.08992 * 117.50404 * 144.97602 * 5 2 1 7 7 C 1.53006 * 117.49660 * 359.96912 * 5 2 1 8 8 C 1.50696 * 109.46617 * 175.09018 * 7 5 2 9 9 O 1.21284 * 120.00427 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99877 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00447 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47294 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47131 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 14 18 18 C 1.36930 * 120.00258 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99225 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47411 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46826 * 120.00327 * 22 20 18 25 25 H 1.48495 * 109.47136 * 239.99966 * 22 20 18 26 26 H 1.09009 * 109.47044 * 205.67173 * 1 2 3 27 27 H 1.08997 * 109.47152 * 325.67003 * 1 2 3 28 28 H 1.08997 * 109.47245 * 85.67302 * 1 2 3 29 29 H 1.09000 * 117.50959 * 359.97438 * 4 2 1 30 30 H 1.08995 * 117.49441 * 214.95406 * 4 2 1 31 31 H 1.09001 * 109.46726 * 55.09312 * 7 5 2 32 32 H 1.08996 * 109.47165 * 295.09228 * 7 5 2 33 33 H 0.97006 * 119.99798 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47059 * 60.00204 * 11 10 8 35 35 H 1.09004 * 109.47074 * 300.00161 * 11 10 8 36 36 H 1.09001 * 109.46832 * 60.00150 * 12 11 10 37 37 H 1.09000 * 109.47611 * 300.00447 * 12 11 10 38 38 H 1.08998 * 109.46509 * 60.00429 * 13 12 11 39 39 H 1.09001 * 109.46801 * 300.00272 * 13 12 11 40 40 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 41 41 H 1.09004 * 109.47261 * 300.00303 * 14 13 12 42 42 H 1.09001 * 109.46997 * 60.00426 * 15 14 13 43 43 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 44 44 H 1.09001 * 109.47289 * 60.00050 * 16 15 14 45 45 H 1.09004 * 109.47261 * 300.00306 * 16 15 14 46 46 H 0.97001 * 119.99251 * 0.02562 * 17 16 15 47 47 H 0.97000 * 119.99950 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2376 -1.1216 0.7646 5 6 2.2365 -1.1207 -0.7655 6 1 3.1711 -0.8746 -1.2693 7 6 1.3588 -2.1560 -1.4718 8 6 2.2302 -3.0976 -2.2623 9 8 3.4347 -2.9550 -2.2606 10 7 1.6712 -4.0983 -2.9712 11 6 2.5182 -5.0141 -3.7393 12 6 1.6406 -6.0493 -4.4457 13 6 2.5253 -7.0054 -5.2484 14 6 1.6477 -8.0402 -5.9553 15 6 2.5322 -8.9958 -6.7585 16 6 1.6546 -10.0310 -7.4648 17 7 2.5017 -10.9465 -8.2335 18 6 1.9337 -11.9630 -8.9538 19 1 0.8611 -12.0897 -8.9557 20 6 2.7362 -12.8301 -9.6825 21 7 4.0432 -12.6753 -9.6806 22 14 1.9613 -14.2173 -10.6646 23 1 0.4858 -14.1751 -10.5017 24 1 2.3050 -14.0592 -12.1006 25 1 2.4770 -15.5201 -10.1728 26 1 -0.3633 -0.9263 0.4452 27 1 -0.3633 0.8486 0.5795 28 1 -0.3633 0.0775 -1.0247 29 1 1.6131 -1.8594 1.2682 30 1 3.1729 -0.8755 1.2673 31 1 0.6683 -1.6482 -2.1451 32 1 0.7939 -2.7202 -0.7298 33 1 0.7078 -4.2122 -2.9729 34 1 3.2081 -5.5223 -3.0656 35 1 3.0839 -4.4500 -4.4810 36 1 0.9504 -5.5414 -5.1194 37 1 1.0752 -6.6133 -3.7038 38 1 3.2157 -7.5132 -4.5750 39 1 3.0903 -6.4410 -5.9903 40 1 0.9575 -7.5320 -6.6287 41 1 1.0823 -8.6045 -5.2136 42 1 3.2227 -9.5041 -6.0854 43 1 3.0972 -8.4312 -7.5002 44 1 0.9638 -9.5232 -8.1378 45 1 1.0899 -10.5956 -6.7228 46 1 3.4650 -10.8324 -8.2320 47 1 4.6041 -13.2814 -10.1895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179470910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:14 Heat of formation + Delta-G solvation = -64.091337 kcal Electronic energy + Delta-G solvation = -20580.617961 eV Core-core repulsion = 17376.004637 eV Total energy + Delta-G solvation = -3204.613324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87848 -38.72481 -37.86649 -36.71222 -35.28994 -33.54140 -31.86050 -30.63744 -29.07785 -27.97466 -25.71405 -23.77545 -22.60943 -22.20800 -22.02577 -21.46138 -20.14287 -19.12550 -18.23489 -17.12475 -17.00475 -16.67502 -16.48623 -16.15004 -15.49084 -15.39680 -15.20774 -14.76755 -14.57739 -14.25206 -13.90063 -13.81396 -13.49500 -13.41240 -13.04440 -12.98014 -12.86249 -12.64590 -12.43062 -12.38432 -12.13973 -12.08621 -12.01065 -11.81187 -11.80037 -11.47140 -11.34827 -10.95704 -10.95091 -10.80834 -10.61519 -10.08427 -9.02119 -7.97058 -5.26683 1.46556 1.48102 1.58425 1.66126 2.20520 2.55273 2.87276 3.36626 3.71157 3.72140 3.78241 3.96102 4.00957 4.01598 4.07976 4.24558 4.29627 4.34361 4.46147 4.53977 4.59134 4.63366 4.65555 4.75554 4.78996 4.87348 4.94183 4.97875 4.99441 5.00965 5.03811 5.06620 5.15879 5.25238 5.28853 5.31392 5.36344 5.46390 5.47817 5.50506 5.53440 5.56406 6.25807 6.59176 7.29447 7.31086 8.08236 8.31051 9.27051 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.071097 B = 0.001591 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.735736 B =17590.656480 C =17854.553220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.103 0.897 4 C -0.180 4.180 5 C -0.155 4.155 6 H 0.087 0.913 7 C -0.099 4.099 8 C 0.506 3.494 9 O -0.592 6.592 10 N -0.720 5.720 11 C 0.119 3.881 12 C -0.116 4.116 13 C -0.114 4.114 14 C -0.103 4.103 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.250 4.250 19 H 0.077 0.923 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.418 0.582 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.372 0.628 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 26.317 21.225 35.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 H 0.121 0.879 4 C -0.217 4.217 5 C -0.174 4.174 6 H 0.106 0.894 7 C -0.138 4.138 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.372 5.372 11 C -0.005 4.005 12 C -0.154 4.154 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.155 4.155 16 C 0.022 3.978 17 N -0.394 5.394 18 C -0.382 4.382 19 H 0.095 0.905 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.255 0.745 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.204 0.796 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.726 26.315 21.167 35.434 hybrid contribution 0.400 -0.995 -0.780 1.326 sum -10.326 25.320 20.387 34.108 Atomic orbital electron populations 1.21406 0.91267 1.02771 1.02621 1.22511 0.96474 0.94009 1.03138 0.87922 1.23270 1.02730 1.02220 0.93494 1.22076 1.00829 1.00082 0.94373 0.89437 1.21205 0.97355 0.95229 1.00000 1.21294 0.88771 0.81502 0.79032 1.90690 1.17656 1.73750 1.65114 1.45973 1.11674 1.30401 1.49197 1.21306 0.93765 0.90983 0.94455 1.21683 0.98085 0.96021 0.99601 1.21459 0.98181 0.96591 0.99014 1.21414 0.97729 0.96144 0.98810 1.21644 0.98464 0.96631 0.98799 1.20884 0.93420 0.90608 0.92923 1.42683 1.05941 1.33675 1.57129 1.19742 0.92410 1.05272 1.20744 0.90533 1.25648 0.95967 1.02681 1.02752 1.69838 1.04035 1.41106 1.47266 0.85008 0.78081 0.78557 0.77721 1.18858 1.21874 1.21867 0.91641 0.91571 0.91294 0.87674 0.89471 0.86131 0.86456 0.74495 0.92939 0.92904 0.89902 0.89911 0.92089 0.92082 0.91175 0.91177 0.92809 0.92796 0.96222 0.96232 0.79610 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.20 71.98 0.66 -0.05 16 2 C -0.14 -1.43 6.41 -10.77 -0.07 -1.50 16 3 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.18 -2.15 9.83 30.62 0.30 -1.85 16 5 C -0.15 -2.18 5.41 -10.79 -0.06 -2.24 16 6 H 0.09 1.77 7.31 -2.39 -0.02 1.75 16 7 C -0.10 -0.98 5.06 29.85 0.15 -0.83 16 8 C 0.51 9.03 7.83 87.66 0.69 9.71 16 9 O -0.59 -16.82 15.56 -3.04 -0.05 -16.87 16 10 N -0.72 -9.45 5.56 -463.06 -2.57 -12.02 16 11 C 0.12 1.98 5.67 86.38 0.49 2.47 16 12 C -0.12 -1.54 5.33 30.60 0.16 -1.38 16 13 C -0.11 -2.13 5.21 30.60 0.16 -1.97 16 14 C -0.10 -2.31 5.21 30.59 0.16 -2.15 16 15 C -0.12 -3.76 5.33 30.59 0.16 -3.60 16 16 C 0.15 6.05 6.26 86.38 0.54 6.59 16 17 N -0.75 -40.04 5.60 -343.44 -1.92 -41.96 16 18 C -0.25 -14.45 9.99 84.04 0.84 -13.61 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 21 N -0.97 -61.00 13.06 21.65 0.28 -60.71 16 22 Si 0.98 46.81 29.55 68.60 2.03 48.83 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H 0.06 0.29 7.90 -2.38 -0.02 0.27 16 27 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.07 0.31 7.84 -2.39 -0.02 0.29 16 29 H 0.10 0.99 7.94 -2.39 -0.02 0.97 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.12 0.65 7.77 -2.39 -0.02 0.63 16 32 H 0.12 0.64 7.88 -2.39 -0.02 0.62 16 33 H 0.42 2.47 8.47 -92.70 -0.79 1.68 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.37 21.04 7.67 -92.71 -0.71 20.33 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -74.77 383.94 1.85 -72.92 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.57 Total: 24.38 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.66 Total: -14.57 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -4.21 Total: -114.70 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.05 Total: -16.87 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -74.77 1.85 -72.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179470910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.828 kcal (2) G-P(sol) polarization free energy of solvation -74.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds