Wall clock time and date at job start Tue Mar 31 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47021 * 119.99573 * 2 1 3 5 5 C 1.52999 * 109.46626 * 64.99947 * 4 2 1 6 6 C 1.53006 * 109.47000 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99618 * 179.97438 * 7 6 5 10 10 C 1.47416 * 125.65318 * 0.03070 * 9 7 6 11 11 C 1.54912 * 104.83326 * 204.08761 * 10 9 7 12 12 C 1.55153 * 101.57951 * 322.98862 * 11 10 9 13 13 H 1.09003 * 110.71574 * 276.95625 * 12 11 10 14 14 N 1.46500 * 110.71673 * 153.86737 * 12 11 10 15 15 C 1.36936 * 120.00285 * 86.45243 * 14 12 11 16 16 H 1.07992 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99953 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00253 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47237 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47658 * 119.99790 * 19 17 15 22 22 H 1.48504 * 109.46954 * 240.00045 * 19 17 15 23 23 C 1.47023 * 125.64303 * 179.71283 * 9 7 6 24 24 H 1.09001 * 109.88848 * 298.39655 * 23 9 7 25 25 C 1.53004 * 109.88308 * 59.56727 * 23 9 7 26 26 H 1.09002 * 109.46905 * 60.00375 * 1 2 3 27 27 H 1.09004 * 109.47446 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47518 * 300.00339 * 1 2 3 29 29 H 1.08992 * 109.47518 * 239.99660 * 2 1 3 30 30 H 1.09001 * 109.47273 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46911 * 299.99622 * 3 2 1 32 32 H 1.09009 * 109.47170 * 59.99770 * 3 2 1 33 33 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 34 34 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 35 35 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 36 36 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 37 37 H 1.09004 * 109.47107 * 300.00294 * 6 5 4 38 38 H 1.09000 * 109.46866 * 60.00185 * 6 5 4 39 39 H 1.09007 * 110.36522 * 322.92902 * 10 9 7 40 40 H 1.08997 * 110.37000 * 85.13753 * 10 9 7 41 41 H 1.09005 * 111.00073 * 81.06101 * 11 10 9 42 42 H 1.09002 * 111.00628 * 204.87091 * 11 10 9 43 43 H 0.97002 * 119.99984 * 266.44569 * 14 12 11 44 44 H 0.96991 * 119.99985 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.47290 * 58.53942 * 25 23 9 46 46 H 1.08994 * 109.47109 * 178.54154 * 25 23 9 47 47 H 1.09002 * 109.46927 * 298.54230 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 6 2.1445 -2.9165 2.4377 7 6 1.7463 -4.3687 2.3771 8 8 1.1175 -4.7859 1.4277 9 7 2.0900 -5.2039 3.3775 10 6 2.8503 -4.8320 4.5845 11 6 3.5005 -6.1529 5.0663 12 6 2.3836 -7.1827 4.7516 13 1 1.6429 -7.2046 5.5511 14 7 2.9528 -8.5157 4.5384 15 6 3.1748 -9.3442 5.6058 16 1 2.9300 -9.0152 6.6048 17 6 3.7137 -10.6074 5.4036 18 7 4.0107 -11.0091 4.1859 19 14 4.0159 -11.7379 6.8597 20 1 3.5998 -11.0552 8.1111 21 1 3.2279 -12.9850 6.6902 22 1 5.4610 -12.0718 6.9355 23 6 1.7630 -6.6355 3.4488 24 1 0.6812 -6.7683 3.4670 25 6 2.3597 -7.3663 2.2443 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1262 -0.6442 1.2953 34 1 1.6053 -0.2616 2.1370 35 1 0.5489 -2.2724 1.1421 36 1 2.0698 -2.6549 0.3004 37 1 3.2309 -2.8396 2.4841 38 1 1.7095 -2.4568 3.3251 39 1 3.6184 -4.0988 4.3380 40 1 2.1804 -4.4364 5.3479 41 1 4.4053 -6.3724 4.4994 42 1 3.7106 -6.1178 6.1353 43 1 3.1723 -8.8115 3.6410 44 1 4.3869 -11.8918 4.0446 45 1 3.4402 -7.2227 2.2310 46 1 2.1355 -8.4304 2.3173 47 1 1.9287 -6.9662 1.3266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179590939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:08 Heat of formation + Delta-G solvation = -47.891275 kcal Electronic energy + Delta-G solvation = -22615.517455 eV Core-core repulsion = 19411.606618 eV Total energy + Delta-G solvation = -3203.910837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.01130 -37.82571 -36.93083 -34.17223 -32.96789 -31.55990 -30.67328 -29.06855 -27.44930 -27.07886 -25.19823 -23.64308 -22.82673 -21.78770 -20.20929 -19.45447 -18.51580 -17.51063 -16.74178 -16.15301 -15.50344 -15.21075 -14.83828 -14.50400 -14.33325 -13.82028 -13.76435 -13.35714 -13.25407 -12.94141 -12.52378 -12.44523 -12.20194 -12.07107 -11.94898 -11.79784 -11.64635 -11.49304 -11.20587 -11.16039 -10.98502 -10.85059 -10.84051 -10.77483 -10.58448 -10.44933 -10.19486 -9.96728 -9.72303 -9.40842 -8.96084 -8.35203 -7.02828 -5.82447 -3.12195 2.86697 3.21781 3.40179 3.45955 3.48200 4.46428 4.54499 4.60984 4.64887 4.78593 4.98432 5.05528 5.07848 5.24921 5.31740 5.35409 5.40934 5.43840 5.50554 5.54148 5.55573 5.60230 5.63802 5.64984 5.68674 5.73608 5.84073 5.94086 5.96566 6.03269 6.07547 6.12214 6.21510 6.23934 6.29035 6.34280 6.56619 6.58423 6.73806 6.85271 7.00330 7.65989 7.83539 8.35949 8.42659 9.47768 10.03261 10.38188 11.40146 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048592 B = 0.002775 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.085547 B =10089.260503 C =10343.046041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.136 4.136 7 C 0.524 3.476 8 O -0.545 6.545 9 N -0.611 5.611 10 C 0.098 3.902 11 C -0.153 4.153 12 C 0.173 3.827 13 H 0.062 0.938 14 N -0.718 5.718 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.128 3.872 24 H 0.070 0.930 25 C -0.158 4.158 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.391 0.609 44 H 0.256 0.744 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 22.435 -3.967 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.176 4.176 7 C 0.313 3.687 8 O -0.423 6.423 9 N -0.345 5.345 10 C -0.025 4.025 11 C -0.195 4.195 12 C 0.061 3.939 13 H 0.080 0.920 14 N -0.361 5.361 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.024 3.976 24 H 0.088 0.912 25 C -0.216 4.216 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.229 0.771 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.735 22.137 -4.381 22.873 hybrid contribution 0.427 -0.755 0.659 1.089 sum -3.308 21.382 -3.721 21.954 Atomic orbital electron populations 1.21903 0.95278 1.02184 1.01401 1.21115 0.96009 0.95942 0.98594 1.21849 1.00866 0.96165 1.01582 1.21674 1.00751 0.95050 0.97773 1.21403 1.02045 0.93856 0.96988 1.21668 1.02797 0.92281 1.00822 1.20335 0.79364 0.87724 0.81308 1.90670 1.40810 1.78026 1.32830 1.48669 1.55040 1.10073 1.20756 1.22362 0.94694 0.98730 0.86729 1.23543 1.00662 0.93893 1.01379 1.21178 0.93172 0.86496 0.93039 0.92035 1.42685 1.74364 1.10911 1.08186 1.19281 1.34980 0.95028 0.88104 0.91019 1.24765 1.01790 0.97733 0.96519 1.69669 1.49241 1.19873 1.19098 0.86103 0.77476 0.80860 0.81624 1.20522 1.21834 1.21863 1.21806 0.99110 0.79197 0.97454 0.91232 1.21990 1.00893 1.01287 0.97399 0.93028 0.92086 0.92839 0.91184 0.92786 0.92878 0.92800 0.91984 0.91989 0.91014 0.91282 0.89262 0.89318 0.91409 0.91757 0.90701 0.90644 0.77103 0.93426 0.92597 0.90340 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.95 37.16 0.33 -0.83 16 2 C -0.10 -0.76 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.11 -0.92 4.68 -26.73 -0.13 -1.04 16 5 C -0.11 -1.08 4.26 -26.73 -0.11 -1.19 16 6 C -0.14 -1.45 4.71 -27.88 -0.13 -1.58 16 7 C 0.52 7.99 7.63 -10.99 -0.08 7.91 16 8 O -0.55 -10.22 14.87 5.56 0.08 -10.14 16 9 N -0.61 -9.43 3.08 -163.01 -0.50 -9.93 16 10 C 0.10 1.27 6.69 -2.53 -0.02 1.25 16 11 C -0.15 -2.49 6.77 -24.58 -0.17 -2.66 16 12 C 0.17 3.34 3.45 -66.09 -0.23 3.11 16 13 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 14 N -0.72 -17.42 5.02 -51.65 -0.26 -17.68 16 15 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.13 2.31 3.49 -66.95 -0.23 2.07 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 C -0.16 -3.03 7.93 37.16 0.29 -2.74 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.81 6.52 -51.93 -0.34 0.47 16 36 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.09 0.84 7.85 -51.93 -0.41 0.43 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.39 10.06 4.94 -40.82 -0.20 9.86 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 45 H 0.05 1.10 8.05 -51.93 -0.42 0.68 16 46 H 0.08 1.64 6.73 -51.93 -0.35 1.29 16 47 H 0.06 1.17 6.74 -51.93 -0.35 0.82 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -30.68 366.13 -8.78 -39.46 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.68 Total: 7.22 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.64 Total: -4.46 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.04 Total: -54.52 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.68 -8.78 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179590939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.427 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds