Wall clock time and date at job start Tue Mar 31 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47021 * 119.99573 * 2 1 3 5 5 C 1.52999 * 109.46626 * 64.99947 * 4 2 1 6 6 C 1.53006 * 109.47000 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99618 * 179.97438 * 7 6 5 10 10 C 1.47416 * 125.65318 * 0.03070 * 9 7 6 11 11 C 1.54912 * 104.83326 * 204.08761 * 10 9 7 12 12 C 1.55153 * 101.57951 * 322.98862 * 11 10 9 13 13 H 1.09003 * 110.71574 * 276.95625 * 12 11 10 14 14 N 1.46500 * 110.71673 * 153.86737 * 12 11 10 15 15 C 1.36936 * 120.00285 * 86.45243 * 14 12 11 16 16 H 1.07992 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99953 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00253 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47237 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47658 * 119.99790 * 19 17 15 22 22 H 1.48504 * 109.46954 * 240.00045 * 19 17 15 23 23 C 1.47023 * 125.64303 * 179.71283 * 9 7 6 24 24 H 1.09001 * 109.88848 * 298.39655 * 23 9 7 25 25 C 1.53004 * 109.88308 * 59.56727 * 23 9 7 26 26 H 1.09002 * 109.46905 * 60.00375 * 1 2 3 27 27 H 1.09004 * 109.47446 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47518 * 300.00339 * 1 2 3 29 29 H 1.08992 * 109.47518 * 239.99660 * 2 1 3 30 30 H 1.09001 * 109.47273 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46911 * 299.99622 * 3 2 1 32 32 H 1.09009 * 109.47170 * 59.99770 * 3 2 1 33 33 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 34 34 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 35 35 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 36 36 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 37 37 H 1.09004 * 109.47107 * 300.00294 * 6 5 4 38 38 H 1.09000 * 109.46866 * 60.00185 * 6 5 4 39 39 H 1.09007 * 110.36522 * 322.92902 * 10 9 7 40 40 H 1.08997 * 110.37000 * 85.13753 * 10 9 7 41 41 H 1.09005 * 111.00073 * 81.06101 * 11 10 9 42 42 H 1.09002 * 111.00628 * 204.87091 * 11 10 9 43 43 H 0.97002 * 119.99984 * 266.44569 * 14 12 11 44 44 H 0.96991 * 119.99985 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.47290 * 58.53942 * 25 23 9 46 46 H 1.08994 * 109.47109 * 178.54154 * 25 23 9 47 47 H 1.09002 * 109.46927 * 298.54230 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 6 2.1445 -2.9165 2.4377 7 6 1.7463 -4.3687 2.3771 8 8 1.1175 -4.7859 1.4277 9 7 2.0900 -5.2039 3.3775 10 6 2.8503 -4.8320 4.5845 11 6 3.5005 -6.1529 5.0663 12 6 2.3836 -7.1827 4.7516 13 1 1.6429 -7.2046 5.5511 14 7 2.9528 -8.5157 4.5384 15 6 3.1748 -9.3442 5.6058 16 1 2.9300 -9.0152 6.6048 17 6 3.7137 -10.6074 5.4036 18 7 4.0107 -11.0091 4.1859 19 14 4.0159 -11.7379 6.8597 20 1 3.5998 -11.0552 8.1111 21 1 3.2279 -12.9850 6.6902 22 1 5.4610 -12.0718 6.9355 23 6 1.7630 -6.6355 3.4488 24 1 0.6812 -6.7683 3.4670 25 6 2.3597 -7.3663 2.2443 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1262 -0.6442 1.2953 34 1 1.6053 -0.2616 2.1370 35 1 0.5489 -2.2724 1.1421 36 1 2.0698 -2.6549 0.3004 37 1 3.2309 -2.8396 2.4841 38 1 1.7095 -2.4568 3.3251 39 1 3.6184 -4.0988 4.3380 40 1 2.1804 -4.4364 5.3479 41 1 4.4053 -6.3724 4.4994 42 1 3.7106 -6.1178 6.1353 43 1 3.1723 -8.8115 3.6410 44 1 4.3869 -11.8918 4.0446 45 1 3.4402 -7.2227 2.2310 46 1 2.1355 -8.4304 2.3173 47 1 1.9287 -6.9662 1.3266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179590939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:07 Heat of formation + Delta-G solvation = -65.237394 kcal Electronic energy + Delta-G solvation = -22616.269639 eV Core-core repulsion = 19411.606618 eV Total energy + Delta-G solvation = -3204.663021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28727 -39.06252 -37.74489 -35.91351 -33.96713 -33.18941 -32.07145 -30.68601 -28.08537 -27.90636 -26.78338 -25.39900 -24.04728 -22.77043 -20.86914 -20.80491 -19.78998 -19.43567 -17.99905 -17.20641 -16.72822 -16.55932 -16.07165 -15.86367 -15.49342 -15.11415 -14.91246 -14.45322 -14.42285 -14.18100 -13.84499 -13.59128 -13.25379 -13.05706 -13.03448 -12.93820 -12.90725 -12.84741 -12.64244 -12.48756 -12.41875 -12.06500 -12.00884 -11.84816 -11.60141 -11.52701 -11.50040 -11.40843 -11.27521 -10.92868 -10.69248 -9.62892 -9.01250 -7.93897 -5.23023 1.49228 1.49854 1.59752 1.69440 2.01474 2.57806 3.36942 3.52446 3.79387 3.85072 3.88394 3.95054 4.01892 4.15205 4.20593 4.27158 4.37650 4.40086 4.42160 4.57225 4.64637 4.66123 4.71917 4.78712 4.82959 4.86780 4.87199 4.93907 5.01310 5.05631 5.07116 5.13649 5.20137 5.25920 5.27575 5.34038 5.35594 5.43710 5.51773 5.55671 5.57202 5.59783 6.27956 6.64646 7.22579 7.34922 8.08838 8.32237 9.30132 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048592 B = 0.002775 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.085547 B =10089.260503 C =10343.046041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.102 4.102 6 C -0.125 4.125 7 C 0.516 3.484 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.106 3.894 11 C -0.145 4.145 12 C 0.164 3.836 13 H 0.066 0.934 14 N -0.734 5.734 15 C -0.235 4.235 16 H 0.082 0.918 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.298 1.298 22 H -0.296 1.296 23 C 0.133 3.867 24 H 0.061 0.939 25 C -0.142 4.142 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.380 0.620 44 H 0.250 0.750 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 25.353 -2.031 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.164 4.164 7 C 0.307 3.693 8 O -0.470 6.470 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.186 4.186 12 C 0.054 3.946 13 H 0.083 0.917 14 N -0.377 5.377 15 C -0.367 4.367 16 H 0.100 0.900 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.226 1.226 22 H -0.223 1.223 23 C 0.028 3.972 24 H 0.079 0.921 25 C -0.201 4.201 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.216 0.784 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.417 25.129 -2.400 25.473 hybrid contribution 0.258 -1.603 0.012 1.624 sum -3.159 23.525 -2.388 23.856 Atomic orbital electron populations 1.21896 0.95499 1.01380 1.01946 1.21134 0.95863 0.96718 0.98244 1.21817 1.01111 0.95206 1.02020 1.21619 1.01423 0.93111 0.98289 1.21353 1.00995 0.95431 0.96184 1.21725 1.04255 0.88485 1.01984 1.21282 0.78343 0.89397 0.80233 1.90657 1.42761 1.79079 1.34474 1.48744 1.55298 1.08644 1.21913 1.22525 0.95622 0.97376 0.86108 1.23353 0.98645 0.94545 1.02050 1.21395 0.94312 0.85181 0.93669 0.91655 1.42875 1.74844 1.12789 1.07153 1.19691 1.32840 0.95121 0.89069 0.89990 1.25579 1.02966 0.99596 0.98894 1.69834 1.51270 1.19987 1.21213 0.85063 0.76690 0.78597 0.79329 1.18603 1.22554 1.22306 1.21535 0.98322 0.81238 0.96071 0.92117 1.21797 1.00237 0.99966 0.98059 0.92682 0.93537 0.92133 0.92218 0.92366 0.92685 0.92164 0.90954 0.90668 0.92489 0.93392 0.87006 0.86394 0.87930 0.88802 0.92683 0.89324 0.78447 0.94136 0.93433 0.92715 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.95 71.98 0.64 -1.51 16 2 C -0.10 -1.39 2.92 -10.79 -0.03 -1.43 16 3 C -0.14 -1.59 9.19 71.98 0.66 -0.92 16 4 C -0.11 -1.41 4.68 30.60 0.14 -1.27 16 5 C -0.10 -1.92 4.26 30.60 0.13 -1.79 16 6 C -0.13 -2.24 4.71 29.85 0.14 -2.10 16 7 C 0.52 14.90 7.63 87.66 0.67 15.57 16 8 O -0.59 -22.17 14.87 -3.04 -0.05 -22.22 16 9 N -0.61 -17.66 3.08 -788.04 -2.43 -20.08 16 10 C 0.11 2.29 6.69 86.86 0.58 2.87 16 11 C -0.15 -4.37 6.77 31.99 0.22 -4.15 16 12 C 0.16 6.20 3.45 46.18 0.16 6.36 16 13 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 14 N -0.73 -36.04 5.02 -317.32 -1.59 -37.63 16 15 C -0.24 -12.62 9.98 84.03 0.84 -11.78 16 16 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 17 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 18 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 19 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 C 0.13 4.78 3.49 45.35 0.16 4.94 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 25 C -0.14 -5.69 7.93 71.98 0.57 -5.12 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.79 6.57 -2.38 -0.02 0.78 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 1.25 6.52 -2.39 -0.02 1.23 16 36 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.11 1.57 7.85 -2.38 -0.02 1.55 16 38 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.61 7.48 -2.38 -0.02 1.59 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.38 20.24 4.94 -92.71 -0.46 19.79 16 44 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 46 H 0.05 2.42 6.73 -2.39 -0.02 2.41 16 47 H 0.05 2.22 6.74 -2.39 -0.02 2.20 16 Total: -1.00 -68.59 366.13 4.05 -64.54 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.46 Total: 31.31 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.35 Total: -4.29 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -3.74 Total: -116.79 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.59 4.05 -64.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179590939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.700 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds