Wall clock time and date at job start Tue Mar 31 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.87686 * 2 1 4 4 C 1.54316 * 110.01247 * 121.10229 * 2 1 3 5 5 H 1.09001 * 110.71962 * 260.22311 * 4 2 1 6 6 N 1.46501 * 110.72069 * 23.31632 * 4 2 1 7 7 C 1.36940 * 119.99861 * 205.00403 * 6 4 2 8 8 H 1.07992 * 120.00339 * 359.97438 * 7 6 4 9 9 C 1.38821 * 119.99777 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99601 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99767 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47223 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46766 * 120.00056 * 11 9 7 14 14 H 1.48504 * 109.47216 * 239.99727 * 11 9 7 15 15 C 1.55153 * 102.94436 * 141.67776 * 4 2 1 16 16 C 1.55129 * 101.48794 * 324.33165 * 15 4 2 17 17 N 1.47021 * 109.87838 * 238.98661 * 2 1 3 18 18 C 1.34779 * 125.65063 * 61.45399 * 17 2 1 19 19 O 1.21282 * 119.99927 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00033 * 179.97438 * 18 17 2 21 21 C 1.53006 * 109.47240 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46997 * 180.02562 * 21 20 18 23 23 C 1.52997 * 109.47317 * 60.00177 * 22 21 20 24 24 C 1.52992 * 109.46961 * 299.99715 * 22 21 20 25 25 C 1.53006 * 109.46623 * 179.97438 * 22 21 20 26 26 H 1.08992 * 109.47027 * 179.56091 * 1 2 3 27 27 H 1.09004 * 109.46904 * 299.56401 * 1 2 3 28 28 H 1.08998 * 109.46887 * 59.55477 * 1 2 3 29 29 H 0.96996 * 120.00202 * 25.00159 * 6 4 2 30 30 H 0.97003 * 119.99331 * 180.02562 * 10 9 7 31 31 H 1.09004 * 111.00146 * 82.57128 * 15 4 2 32 32 H 1.08998 * 111.00797 * 206.38357 * 15 4 2 33 33 H 1.08991 * 110.49753 * 278.45202 * 16 15 4 34 34 H 1.09001 * 110.34115 * 156.05129 * 16 15 4 35 35 H 1.09000 * 109.47247 * 59.99881 * 20 18 17 36 36 H 1.08996 * 109.47258 * 300.00041 * 20 18 17 37 37 H 1.09000 * 109.46866 * 59.99931 * 21 20 18 38 38 H 1.09001 * 109.46611 * 300.00048 * 21 20 18 39 39 H 1.09002 * 109.47153 * 299.99641 * 23 22 21 40 40 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.47261 * 59.99813 * 23 22 21 42 42 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 43 43 H 1.08996 * 109.47747 * 300.00196 * 24 22 21 44 44 H 1.09002 * 109.47103 * 60.00608 * 24 22 21 45 45 H 1.08993 * 109.46955 * 300.00075 * 25 22 21 46 46 H 1.09000 * 109.47050 * 59.99904 * 25 22 21 47 47 H 1.09001 * 109.47002 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 1.2415 5 1 2.3528 -0.0453 2.0201 6 7 1.0532 -1.6874 1.7471 7 6 1.0692 -2.0643 3.0636 8 1 1.8229 -1.6700 3.7290 9 6 0.1173 -2.9539 3.5425 10 7 -0.8010 -3.4348 2.7314 11 14 0.1396 -3.4684 5.3381 12 1 1.2634 -2.7910 6.0332 13 1 -1.1430 -3.0828 5.9794 14 1 0.3157 -4.9402 5.4291 15 6 3.2918 -1.5108 0.6892 16 6 2.8130 -1.8795 -0.7396 17 7 2.0299 -0.7124 -1.1850 18 6 1.8049 -0.3602 -2.4663 19 8 1.1379 0.6212 -2.7172 20 6 2.3820 -1.1858 -3.5872 21 6 1.9797 -0.5740 -4.9307 22 6 2.5650 -1.4126 -6.0686 23 6 2.0271 -2.8420 -5.9777 24 6 4.0905 -1.4334 -5.9541 25 6 2.1622 -0.8011 -7.4121 26 1 -0.3633 -1.0276 -0.0079 27 1 -0.3633 0.5071 0.8939 28 1 -0.3633 0.5207 -0.8860 29 1 0.3764 -2.0418 1.1495 30 1 -1.4664 -4.0561 3.0662 31 1 4.1682 -0.8635 0.6563 32 1 3.4925 -2.4071 1.2761 33 1 2.1852 -2.7700 -0.7138 34 1 3.6681 -2.0359 -1.3972 35 1 1.9988 -2.2042 -3.5228 36 1 3.4687 -1.2006 -3.5052 37 1 2.3625 0.4445 -4.9952 38 1 0.8928 -0.5595 -5.0123 39 1 2.3138 -3.2779 -5.0206 40 1 2.4439 -3.4393 -6.7887 41 1 0.9403 -2.8271 -6.0592 42 1 4.5076 -2.0305 -6.7651 43 1 4.4738 -0.4151 -6.0189 44 1 4.3772 -1.8693 -4.9971 45 1 1.0754 -0.7866 -7.4933 46 1 2.5450 0.2174 -7.4771 47 1 2.5796 -1.3982 -8.2228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179755610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:10 Heat of formation + Delta-G solvation = -43.617472 kcal Electronic energy + Delta-G solvation = -23314.501184 eV Core-core repulsion = 20110.775673 eV Total energy + Delta-G solvation = -3203.725511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00873 -38.24927 -37.06829 -33.95917 -31.94955 -30.97609 -30.55575 -28.71532 -27.46262 -27.43187 -25.18504 -24.65321 -23.48579 -22.02964 -19.67160 -18.65842 -18.40133 -17.51376 -16.63784 -16.12292 -15.41413 -14.85695 -14.57255 -14.44063 -14.14948 -13.86017 -13.63859 -13.32374 -13.20627 -12.77102 -12.60771 -12.39821 -12.23591 -12.03660 -11.89628 -11.83277 -11.65408 -11.27217 -11.20307 -11.00087 -10.93754 -10.79164 -10.67757 -10.65093 -10.61448 -10.56803 -10.21055 -10.02350 -9.63043 -9.36284 -8.97557 -8.24588 -7.03809 -5.83160 -3.12536 2.95608 3.33655 3.39526 3.45625 3.47673 4.53366 4.54346 4.62225 4.67856 4.90017 5.08854 5.14550 5.22202 5.31262 5.41129 5.45189 5.48978 5.49871 5.56354 5.61464 5.61964 5.67229 5.75446 5.76427 5.78449 5.88026 5.89534 5.93093 6.01741 6.04804 6.12502 6.18359 6.28255 6.32145 6.37538 6.43812 6.53616 6.64032 6.75915 6.90764 7.04701 7.65698 7.93447 8.35155 8.51327 9.46923 10.02453 10.37551 11.39145 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.003498 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.915162 B = 8003.021602 C = 8147.099882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 H 0.068 0.932 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.160 4.160 16 C 0.106 3.894 17 N -0.610 5.610 18 C 0.524 3.476 19 O -0.550 6.550 20 C -0.139 4.139 21 C -0.091 4.091 22 C -0.072 4.072 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.140 4.140 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.388 0.612 30 H 0.255 0.745 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 2.888 -16.157 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.086 0.914 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.356 5.356 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.313 3.687 19 O -0.428 6.428 20 C -0.179 4.179 21 C -0.129 4.129 22 C -0.072 4.072 23 C -0.203 4.203 24 C -0.201 4.201 25 C -0.197 4.197 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.225 0.775 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.189 3.394 -16.170 18.906 hybrid contribution -0.196 -0.651 0.873 1.107 sum 8.993 2.743 -15.297 17.955 Atomic orbital electron populations 1.21906 0.94347 1.02849 1.01529 1.21987 0.95389 0.95580 0.84891 0.91409 1.21195 0.89114 0.91604 0.92158 0.91295 1.42564 1.32841 1.51242 1.08945 1.19290 1.10868 1.21025 0.86202 0.90991 1.24751 0.97941 1.00087 0.97917 1.69674 1.18535 1.35435 1.34152 0.86123 0.77259 0.78010 0.84794 1.20531 1.21881 1.21898 1.23547 0.99223 1.02294 0.95030 1.22325 0.94385 0.88815 0.96192 1.48709 1.52087 1.28472 1.05087 1.20338 0.80512 0.85351 0.82517 1.90655 1.40402 1.28323 1.83462 1.21792 1.02139 1.00431 0.93538 1.21382 1.01419 0.98822 0.91265 1.20586 0.95589 0.95679 0.95340 1.21956 1.01086 0.95438 1.01798 1.21943 0.94751 1.01725 1.01726 1.21848 1.01373 1.00520 0.95983 0.91656 0.91640 0.92781 0.77549 0.93483 0.92079 0.89500 0.91106 0.91831 0.88926 0.89149 0.91344 0.91217 0.92247 0.92863 0.92547 0.92861 0.92688 0.92339 0.92607 0.92698 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.52 37.16 0.32 -2.57 16 2 C 0.13 2.25 3.42 -66.96 -0.23 2.02 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.17 3.25 3.48 -66.10 -0.23 3.02 16 5 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 6 N -0.71 -16.84 4.55 -51.66 -0.23 -17.07 16 7 C -0.24 -6.39 9.96 -15.05 -0.15 -6.54 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 11 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C -0.16 -2.55 6.78 -24.47 -0.17 -2.72 16 16 C 0.11 1.56 6.68 -2.41 -0.02 1.54 16 17 N -0.61 -9.94 3.06 -162.88 -0.50 -10.44 16 18 C 0.52 8.44 7.64 -10.99 -0.08 8.36 16 19 O -0.55 -10.61 15.01 5.56 0.08 -10.53 16 20 C -0.14 -1.65 4.00 -27.88 -0.11 -1.76 16 21 C -0.09 -1.03 3.56 -26.73 -0.10 -1.12 16 22 C -0.07 -0.64 0.80 -154.51 -0.12 -0.77 16 23 C -0.15 -1.26 8.12 37.16 0.30 -0.96 16 24 C -0.14 -1.16 8.12 37.15 0.30 -0.86 16 25 C -0.14 -1.16 8.47 37.16 0.31 -0.84 16 26 H 0.06 1.40 6.21 -51.93 -0.32 1.08 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.05 1.06 6.87 -51.93 -0.36 0.70 16 29 H 0.39 9.88 5.69 -40.82 -0.23 9.64 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.75 7.48 -51.93 -0.39 0.36 16 35 H 0.09 1.03 6.43 -51.93 -0.33 0.70 16 36 H 0.09 0.92 6.14 -51.93 -0.32 0.60 16 37 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -29.89 361.40 -8.07 -37.96 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.50 Total: 8.01 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.07 Total: -3.59 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.01 Total: -54.02 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.89 -8.07 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179755610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.656 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds