Wall clock time and date at job start Tue Mar 31 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 C 1.52999 * 109.47416 * 120.00341 * 2 1 3 5 5 C 1.52999 * 109.47152 * 64.99609 * 4 2 1 6 6 H 1.09004 * 109.47184 * 305.00118 * 5 4 2 7 7 C 1.52998 * 109.47034 * 65.00718 * 5 4 2 8 8 C 1.50703 * 109.47025 * 185.00322 * 5 4 2 9 9 O 1.21281 * 119.99875 * 0.02562 * 8 5 4 10 10 N 1.34771 * 119.99925 * 179.97438 * 8 5 4 11 11 C 1.47423 * 125.65109 * 359.96090 * 10 8 5 12 12 C 1.54913 * 104.83623 * 204.16259 * 11 10 8 13 13 C 1.55158 * 101.58001 * 322.99110 * 12 11 10 14 14 H 1.09006 * 110.87523 * 277.06750 * 13 12 11 15 15 N 1.46492 * 110.72240 * 153.86687 * 13 12 11 16 16 C 1.36935 * 120.00376 * 91.47526 * 15 13 12 17 17 H 1.08003 * 119.99724 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00063 * 180.02562 * 16 15 13 19 19 N 1.31622 * 119.99887 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00212 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99941 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00122 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00115 * 20 18 16 24 24 C 1.47031 * 125.64785 * 180.02562 * 10 8 5 25 25 H 1.09000 * 110.00833 * 298.39849 * 24 10 8 26 26 C 1.52999 * 109.88274 * 59.49054 * 24 10 8 27 27 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47044 * 299.99936 * 1 2 3 29 29 H 1.09007 * 109.47092 * 60.00122 * 1 2 3 30 30 H 1.08999 * 109.47044 * 240.00064 * 2 1 3 31 31 H 1.08997 * 109.47422 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47056 * 300.00367 * 3 2 1 33 33 H 1.09002 * 109.46826 * 59.99498 * 3 2 1 34 34 H 1.09009 * 109.46481 * 304.99775 * 4 2 1 35 35 H 1.08999 * 109.47642 * 185.00084 * 4 2 1 36 36 H 1.08997 * 109.47287 * 180.02562 * 7 5 4 37 37 H 1.09005 * 109.47097 * 299.99950 * 7 5 4 38 38 H 1.08994 * 109.47111 * 59.99755 * 7 5 4 39 39 H 1.09000 * 110.36907 * 323.00334 * 11 10 8 40 40 H 1.09001 * 110.36736 * 85.21272 * 11 10 8 41 41 H 1.08993 * 111.00311 * 204.91899 * 12 11 10 42 42 H 1.08996 * 111.00142 * 81.06003 * 12 11 10 43 43 H 0.97009 * 119.99477 * 271.48111 * 15 13 12 44 44 H 0.97006 * 119.99732 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47152 * 177.80433 * 26 24 10 46 46 H 1.08999 * 109.46873 * 297.80939 * 26 24 10 47 47 H 1.09007 * 109.46785 * 57.80426 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 0.5562 -2.2707 1.0527 7 6 2.3449 -2.8708 0.0126 8 6 2.0294 -2.8785 2.4722 9 8 2.5794 -2.2480 3.3502 10 7 1.7697 -4.1895 2.6454 11 6 1.1084 -5.0712 1.6662 12 6 0.5007 -6.2180 2.5120 13 6 1.5901 -6.4140 3.5993 14 1 2.3951 -7.0508 3.2322 15 7 1.0074 -6.9717 4.8222 16 6 0.9670 -8.3283 5.0046 17 1 1.3651 -8.9871 4.2469 18 6 0.4144 -8.8567 6.1631 19 7 0.3761 -10.1606 6.3386 20 14 -0.2734 -7.7173 7.4738 21 1 -1.7107 -7.4606 7.2020 22 1 0.4713 -6.4326 7.4534 23 1 -0.1279 -8.3526 8.8081 24 6 2.0978 -4.9772 3.8428 25 1 3.1766 -4.9867 3.9988 26 6 1.4006 -4.3790 5.0663 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2617 2.1369 35 1 3.1263 -0.6444 1.2951 36 1 2.0562 -3.9209 -0.0314 37 1 2.0599 -2.3768 -0.9163 38 1 3.4238 -2.7955 0.1479 39 1 0.3220 -4.5306 1.1394 40 1 1.8370 -5.4651 0.9577 41 1 0.3780 -7.1213 1.9146 42 1 -0.4464 -5.9147 2.9582 43 1 0.6501 -6.3799 5.5028 44 1 -0.0105 -10.5298 7.1481 45 1 1.6167 -4.9901 5.9425 46 1 1.7641 -3.3648 5.2319 47 1 0.3242 -4.3559 4.8958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179793556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:50 Heat of formation + Delta-G solvation = -35.782314 kcal Electronic energy + Delta-G solvation = -23452.703936 eV Core-core repulsion = 20249.318184 eV Total energy + Delta-G solvation = -3203.385753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36477 -38.12647 -36.75032 -34.42561 -32.98749 -31.52099 -30.79645 -29.27622 -27.42568 -26.86965 -25.45698 -24.41000 -22.89320 -22.10659 -20.05408 -19.37519 -18.65410 -17.95821 -16.91542 -15.94181 -15.66733 -15.44582 -14.58665 -14.39411 -14.12069 -14.02073 -13.84025 -13.45061 -13.24002 -12.89303 -12.64874 -12.52851 -12.45493 -12.21951 -12.06897 -11.94451 -11.72526 -11.62997 -11.41427 -11.36005 -11.14960 -10.91501 -10.85584 -10.73507 -10.66824 -10.51695 -10.32300 -10.07658 -9.65056 -9.41557 -8.99464 -8.45024 -7.35332 -5.83598 -3.20271 2.78305 3.11082 3.33352 3.36500 3.42174 4.39472 4.52310 4.53299 4.64674 4.80718 4.90303 4.94780 5.03550 5.09131 5.18216 5.27115 5.35742 5.38796 5.41073 5.47734 5.51789 5.53988 5.60303 5.67652 5.69418 5.71171 5.79200 5.82911 5.86148 5.92761 5.94312 6.00866 6.03467 6.17072 6.18670 6.25086 6.39381 6.48759 6.57599 6.61448 6.83621 7.73545 7.91713 8.33723 8.35352 9.12724 9.85068 10.04014 11.34310 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033823 B = 0.003657 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.632543 B = 7653.992670 C = 7942.016684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.094 4.094 5 C -0.108 4.108 6 H 0.096 0.904 7 C -0.152 4.152 8 C 0.530 3.470 9 O -0.545 6.545 10 N -0.609 5.609 11 C 0.098 3.902 12 C -0.154 4.154 13 C 0.180 3.820 14 H 0.074 0.926 15 N -0.741 5.741 16 C -0.248 4.248 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.275 1.275 23 H -0.289 1.289 24 C 0.124 3.876 25 H 0.073 0.927 26 C -0.163 4.163 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.368 0.632 44 H 0.260 0.740 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 18.656 -15.323 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.132 4.132 5 C -0.129 4.129 6 H 0.114 0.886 7 C -0.210 4.210 8 C 0.318 3.682 9 O -0.422 6.422 10 N -0.343 5.343 11 C -0.025 4.025 12 C -0.196 4.196 13 C 0.068 3.932 14 H 0.092 0.908 15 N -0.385 5.385 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.709 3.291 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.215 1.215 24 C 0.020 3.980 25 H 0.091 0.909 26 C -0.221 4.221 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.204 0.796 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.579 18.795 -14.838 23.998 hybrid contribution -0.665 0.576 0.987 1.322 sum 0.914 19.371 -13.851 23.831 Atomic orbital electron populations 1.21915 0.95364 1.01822 1.01685 1.21196 0.95855 0.96218 0.98500 1.21823 1.00992 0.95960 1.01626 1.21454 1.01602 0.92289 0.97857 1.21318 1.02128 0.96242 0.93229 0.88614 1.21969 1.00840 1.01238 0.96921 1.20321 0.78639 0.80362 0.88848 1.90665 1.43105 1.63939 1.44517 1.48599 1.59195 1.08333 1.18158 1.22465 0.96162 0.91930 0.91980 1.23534 1.00592 0.96859 0.98572 1.21151 0.94035 0.90315 0.87694 0.90772 1.42963 1.72196 1.04879 1.18419 1.19071 1.33908 0.81216 1.03619 0.89032 1.24651 1.00895 0.95406 0.97815 1.69695 1.50468 1.09617 1.27997 0.86662 0.79372 0.80607 0.82488 1.20968 1.20151 1.21537 1.21861 0.99365 0.91848 0.84882 0.90854 1.22077 1.00404 1.01572 0.98069 0.92481 0.92647 0.92860 0.90911 0.92699 0.92849 0.92675 0.91157 0.91351 0.91353 0.91450 0.92217 0.91240 0.91287 0.90100 0.90847 0.79623 0.92944 0.90862 0.91707 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.95 37.16 0.33 -0.78 16 2 C -0.10 -0.78 2.78 -90.62 -0.25 -1.03 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 4 C -0.09 -0.96 3.50 -26.73 -0.09 -1.05 16 5 C -0.11 -1.13 1.94 -91.77 -0.18 -1.31 16 6 H 0.10 0.91 6.05 -51.93 -0.31 0.60 16 7 C -0.15 -1.31 8.76 37.16 0.33 -0.98 16 8 C 0.53 7.75 7.00 -10.99 -0.08 7.68 16 9 O -0.54 -9.86 14.82 5.56 0.08 -9.78 16 10 N -0.61 -8.85 3.08 -163.01 -0.50 -9.35 16 11 C 0.10 1.18 5.14 -2.53 -0.01 1.17 16 12 C -0.15 -2.36 6.77 -24.58 -0.17 -2.52 16 13 C 0.18 3.28 3.49 -66.10 -0.23 3.05 16 14 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 15 N -0.74 -16.84 4.74 -51.65 -0.24 -17.09 16 16 C -0.25 -6.75 10.44 -15.06 -0.16 -6.90 16 17 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 20 Si 0.88 21.78 27.73 -169.99 -4.71 17.07 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.45 6.45 56.52 0.36 -6.08 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 C 0.12 2.11 3.48 -66.95 -0.23 1.88 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 C -0.16 -2.92 7.93 37.16 0.29 -2.62 16 27 H 0.06 0.41 6.46 -51.93 -0.34 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.82 7.96 -51.92 -0.41 0.41 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.57 5.00 -51.93 -0.26 0.31 16 37 H 0.07 0.46 6.46 -51.93 -0.34 0.13 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.69 7.36 -51.93 -0.38 0.31 16 40 H 0.07 0.73 7.07 -51.93 -0.37 0.36 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.37 8.34 2.92 -40.82 -0.12 8.22 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.07 1.40 6.70 -51.93 -0.35 1.05 16 46 H 0.06 1.17 6.76 -51.93 -0.35 0.82 16 47 H 0.05 0.96 8.04 -51.92 -0.42 0.54 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -31.35 352.88 -7.70 -39.05 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.21 Total: 6.66 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.20 Total: -4.01 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.03 Total: -54.30 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.35 -7.70 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179793556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.266 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds