Wall clock time and date at job start Tue Mar 31 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 C 1.52999 * 109.47416 * 120.00341 * 2 1 3 5 5 C 1.52999 * 109.47152 * 64.99609 * 4 2 1 6 6 H 1.09004 * 109.47184 * 305.00118 * 5 4 2 7 7 C 1.52998 * 109.47034 * 65.00718 * 5 4 2 8 8 C 1.50703 * 109.47025 * 185.00322 * 5 4 2 9 9 O 1.21281 * 119.99875 * 0.02562 * 8 5 4 10 10 N 1.34771 * 119.99925 * 179.97438 * 8 5 4 11 11 C 1.47423 * 125.65109 * 359.96090 * 10 8 5 12 12 C 1.54913 * 104.83623 * 204.16259 * 11 10 8 13 13 C 1.55158 * 101.58001 * 322.99110 * 12 11 10 14 14 H 1.09006 * 110.87523 * 277.06750 * 13 12 11 15 15 N 1.46492 * 110.72240 * 153.86687 * 13 12 11 16 16 C 1.36935 * 120.00376 * 91.47526 * 15 13 12 17 17 H 1.08003 * 119.99724 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00063 * 180.02562 * 16 15 13 19 19 N 1.31622 * 119.99887 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00212 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99941 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00122 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00115 * 20 18 16 24 24 C 1.47031 * 125.64785 * 180.02562 * 10 8 5 25 25 H 1.09000 * 110.00833 * 298.39849 * 24 10 8 26 26 C 1.52999 * 109.88274 * 59.49054 * 24 10 8 27 27 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47044 * 299.99936 * 1 2 3 29 29 H 1.09007 * 109.47092 * 60.00122 * 1 2 3 30 30 H 1.08999 * 109.47044 * 240.00064 * 2 1 3 31 31 H 1.08997 * 109.47422 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47056 * 300.00367 * 3 2 1 33 33 H 1.09002 * 109.46826 * 59.99498 * 3 2 1 34 34 H 1.09009 * 109.46481 * 304.99775 * 4 2 1 35 35 H 1.08999 * 109.47642 * 185.00084 * 4 2 1 36 36 H 1.08997 * 109.47287 * 180.02562 * 7 5 4 37 37 H 1.09005 * 109.47097 * 299.99950 * 7 5 4 38 38 H 1.08994 * 109.47111 * 59.99755 * 7 5 4 39 39 H 1.09000 * 110.36907 * 323.00334 * 11 10 8 40 40 H 1.09001 * 110.36736 * 85.21272 * 11 10 8 41 41 H 1.08993 * 111.00311 * 204.91899 * 12 11 10 42 42 H 1.08996 * 111.00142 * 81.06003 * 12 11 10 43 43 H 0.97009 * 119.99477 * 271.48111 * 15 13 12 44 44 H 0.97006 * 119.99732 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47152 * 177.80433 * 26 24 10 46 46 H 1.08999 * 109.46873 * 297.80939 * 26 24 10 47 47 H 1.09007 * 109.46785 * 57.80426 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 0.5562 -2.2707 1.0527 7 6 2.3449 -2.8708 0.0126 8 6 2.0294 -2.8785 2.4722 9 8 2.5794 -2.2480 3.3502 10 7 1.7697 -4.1895 2.6454 11 6 1.1084 -5.0712 1.6662 12 6 0.5007 -6.2180 2.5120 13 6 1.5901 -6.4140 3.5993 14 1 2.3951 -7.0508 3.2322 15 7 1.0074 -6.9717 4.8222 16 6 0.9670 -8.3283 5.0046 17 1 1.3651 -8.9871 4.2469 18 6 0.4144 -8.8567 6.1631 19 7 0.3761 -10.1606 6.3386 20 14 -0.2734 -7.7173 7.4738 21 1 -1.7107 -7.4606 7.2020 22 1 0.4713 -6.4326 7.4534 23 1 -0.1279 -8.3526 8.8081 24 6 2.0978 -4.9772 3.8428 25 1 3.1766 -4.9867 3.9988 26 6 1.4006 -4.3790 5.0663 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2617 2.1369 35 1 3.1263 -0.6444 1.2951 36 1 2.0562 -3.9209 -0.0314 37 1 2.0599 -2.3768 -0.9163 38 1 3.4238 -2.7955 0.1479 39 1 0.3220 -4.5306 1.1394 40 1 1.8370 -5.4651 0.9577 41 1 0.3780 -7.1213 1.9146 42 1 -0.4464 -5.9147 2.9582 43 1 0.6501 -6.3799 5.5028 44 1 -0.0105 -10.5298 7.1481 45 1 1.6167 -4.9901 5.9425 46 1 1.7641 -3.3648 5.2319 47 1 0.3242 -4.3559 4.8958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179793556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:50 Heat of formation + Delta-G solvation = -54.558431 kcal Electronic energy + Delta-G solvation = -23453.518130 eV Core-core repulsion = 20249.318184 eV Total energy + Delta-G solvation = -3204.199946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53916 -39.31755 -37.67396 -36.08605 -34.13438 -33.18155 -32.08471 -30.84335 -27.97994 -27.61272 -26.90718 -25.64240 -24.57785 -23.14153 -21.17253 -20.40725 -19.91255 -19.81381 -18.03943 -17.20286 -16.81617 -16.49527 -16.12928 -15.90578 -15.34928 -15.01789 -14.81176 -14.74264 -14.40065 -14.08235 -13.93392 -13.64553 -13.45818 -13.19628 -13.13759 -13.11410 -13.01743 -12.86746 -12.70477 -12.61632 -12.33361 -12.24152 -12.10204 -11.89203 -11.72455 -11.57018 -11.56377 -11.36077 -11.33805 -10.98414 -10.60540 -9.66315 -9.32931 -8.03529 -5.36793 1.35814 1.36830 1.43805 1.65884 1.96016 2.45759 3.25535 3.43267 3.54970 3.73004 3.80766 3.86012 3.96179 4.10644 4.18740 4.27228 4.31636 4.33760 4.39426 4.44811 4.51064 4.58286 4.74591 4.75431 4.79081 4.82598 4.91290 4.94901 5.02173 5.04073 5.07787 5.12094 5.15271 5.19682 5.25323 5.30823 5.31718 5.38209 5.46826 5.51586 5.60475 5.77027 6.20653 6.60169 7.05417 7.18818 7.81050 7.99190 9.17593 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033823 B = 0.003657 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.632543 B = 7653.992670 C = 7942.016684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.091 4.091 5 C -0.099 4.099 6 H 0.115 0.885 7 C -0.149 4.149 8 C 0.523 3.477 9 O -0.586 6.586 10 N -0.608 5.608 11 C 0.104 3.896 12 C -0.147 4.147 13 C 0.170 3.830 14 H 0.070 0.930 15 N -0.746 5.746 16 C -0.226 4.226 17 H 0.066 0.934 18 C -0.058 4.058 19 N -0.980 5.980 20 Si 0.939 3.061 21 H -0.277 1.277 22 H -0.257 1.257 23 H -0.296 1.296 24 C 0.130 3.870 25 H 0.064 0.936 26 C -0.155 4.155 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.369 0.631 44 H 0.257 0.743 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 20.593 -17.729 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.129 4.129 5 C -0.120 4.120 6 H 0.132 0.868 7 C -0.206 4.206 8 C 0.314 3.686 9 O -0.467 6.467 10 N -0.342 5.342 11 C -0.017 4.017 12 C -0.188 4.188 13 C 0.060 3.940 14 H 0.088 0.912 15 N -0.391 5.391 16 C -0.357 4.357 17 H 0.084 0.916 18 C -0.250 4.250 19 N -0.631 5.631 20 Si 0.767 3.233 21 H -0.203 1.203 22 H -0.182 1.182 23 H -0.223 1.223 24 C 0.025 3.975 25 H 0.082 0.918 26 C -0.213 4.213 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.205 0.795 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.803 20.781 -17.308 27.057 hybrid contribution -0.340 -0.004 1.659 1.694 sum 0.463 20.777 -15.648 26.015 Atomic orbital electron populations 1.21925 0.94792 1.02237 1.01863 1.21168 0.96236 0.96171 0.97547 1.21838 1.00934 0.95868 1.01901 1.21415 1.00654 0.92474 0.98336 1.21365 1.03327 0.95810 0.91501 0.86759 1.21985 1.00029 1.01772 0.96816 1.21175 0.77656 0.79972 0.89794 1.90650 1.44965 1.64780 1.46258 1.48648 1.59241 1.08593 1.17684 1.22629 0.97402 0.90561 0.91155 1.23371 0.98990 0.98626 0.97772 1.21354 0.94956 0.90730 0.86942 0.91244 1.42962 1.72697 1.03200 1.20216 1.19052 1.31426 0.82882 1.02317 0.91585 1.25361 1.02533 0.96718 1.00376 1.69854 1.52767 1.11660 1.28776 0.85661 0.79006 0.79331 0.79252 1.20323 1.18177 1.22270 1.21595 0.98637 0.91364 0.85935 0.91827 1.21970 1.00507 1.00925 0.97923 0.91920 0.93587 0.91645 0.89440 0.92878 0.91528 0.93465 0.93318 0.92734 0.90509 0.88973 0.93171 0.87863 0.88823 0.89483 0.91711 0.79489 0.93357 0.92362 0.92224 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.95 71.98 0.64 -1.13 16 2 C -0.09 -1.20 2.78 -10.79 -0.03 -1.23 16 3 C -0.15 -1.88 9.19 71.98 0.66 -1.22 16 4 C -0.09 -1.70 3.50 30.59 0.11 -1.59 16 5 C -0.10 -1.79 1.94 -11.54 -0.02 -1.81 16 6 H 0.11 1.69 6.05 -2.39 -0.01 1.67 16 7 C -0.15 -1.97 8.76 71.98 0.63 -1.34 16 8 C 0.52 14.40 7.00 87.66 0.61 15.01 16 9 O -0.59 -21.05 14.82 -3.03 -0.04 -21.10 16 10 N -0.61 -16.31 3.08 -788.03 -2.42 -18.74 16 11 C 0.10 2.12 5.14 86.86 0.45 2.57 16 12 C -0.15 -4.13 6.77 31.99 0.22 -3.91 16 13 C 0.17 6.03 3.49 46.18 0.16 6.19 16 14 H 0.07 2.54 8.09 -2.38 -0.02 2.52 16 15 N -0.75 -33.57 4.74 -317.33 -1.50 -35.07 16 16 C -0.23 -12.38 10.44 84.03 0.88 -11.51 16 17 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 18 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 19 N -0.98 -61.82 13.97 21.65 0.30 -61.52 16 20 Si 0.94 45.27 27.73 68.60 1.90 47.17 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.26 -11.41 6.45 99.48 0.64 -10.77 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 C 0.13 4.28 3.48 45.34 0.16 4.44 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 C -0.16 -5.44 7.93 71.98 0.57 -4.87 16 27 H 0.06 0.66 6.46 -2.39 -0.02 0.65 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.09 0.90 6.34 -2.39 -0.02 0.89 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.05 1.11 7.96 -2.38 -0.02 1.10 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 0.90 5.00 -2.39 -0.01 0.88 16 37 H 0.09 0.81 6.46 -2.38 -0.02 0.79 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 1.50 7.36 -2.39 -0.02 1.49 16 40 H 0.09 1.53 7.07 -2.39 -0.02 1.51 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.37 16.38 2.92 -92.70 -0.27 16.11 16 44 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 45 H 0.06 2.19 6.70 -2.39 -0.02 2.18 16 46 H 0.06 2.15 6.76 -2.39 -0.02 2.13 16 47 H 0.06 1.92 8.04 -2.38 -0.02 1.90 16 Total: -1.00 -69.70 352.88 4.33 -65.37 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.60 Total: 27.18 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.50 Total: -3.30 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -3.63 Total: -115.33 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.04 Total: -21.10 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Total: -69.70 4.33 -65.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179793556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.812 kcal (2) G-P(sol) polarization free energy of solvation -69.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds