Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47323 * 2 1 4 4 C 1.53003 * 109.46539 * 119.99733 * 2 1 3 5 5 C 1.53007 * 109.46784 * 175.00085 * 4 2 1 6 6 H 1.08996 * 109.47298 * 55.00282 * 5 4 2 7 7 C 1.52996 * 109.46962 * 294.99745 * 5 4 2 8 8 C 1.50704 * 109.46827 * 175.00006 * 5 4 2 9 9 O 1.21280 * 120.00288 * 6.83838 * 8 5 4 10 10 N 1.34773 * 119.99510 * 186.83293 * 8 5 4 11 11 C 1.47431 * 125.64603 * 185.80748 * 10 8 5 12 12 C 1.54909 * 104.83013 * 204.16819 * 11 10 8 13 13 C 1.55158 * 101.58222 * 322.98923 * 12 11 10 14 14 H 1.09000 * 110.86820 * 277.06898 * 13 12 11 15 15 N 1.46495 * 110.71725 * 153.87034 * 13 12 11 16 16 C 1.36934 * 120.00392 * 91.48185 * 15 13 12 17 17 H 1.07998 * 120.00136 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00155 * 180.27051 * 16 15 13 19 19 N 1.31627 * 120.00061 * 179.71810 * 18 16 15 20 20 Si 1.86800 * 119.99952 * 359.72282 * 18 16 15 21 21 H 1.48503 * 109.47099 * 90.00029 * 20 18 16 22 22 H 1.48502 * 109.47167 * 209.99410 * 20 18 16 23 23 H 1.48496 * 109.47352 * 329.99996 * 20 18 16 24 24 C 1.47024 * 125.65201 * 5.85391 * 10 8 5 25 25 H 1.08997 * 110.00709 * 298.38726 * 24 10 8 26 26 C 1.52992 * 109.88278 * 59.48438 * 24 10 8 27 27 H 1.08998 * 109.47193 * 300.00648 * 1 2 3 28 28 H 1.09000 * 109.46980 * 60.00295 * 1 2 3 29 29 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47193 * 239.99352 * 2 1 3 31 31 H 1.08993 * 109.47357 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47085 * 300.00055 * 3 2 1 33 33 H 1.09009 * 109.47039 * 59.99435 * 3 2 1 34 34 H 1.08999 * 109.47094 * 55.00195 * 4 2 1 35 35 H 1.08995 * 109.47532 * 294.99696 * 4 2 1 36 36 H 1.08996 * 109.47804 * 294.57958 * 7 5 4 37 37 H 1.09002 * 109.46906 * 54.57882 * 7 5 4 38 38 H 1.08998 * 109.46894 * 174.57347 * 7 5 4 39 39 H 1.09001 * 110.36730 * 323.00375 * 11 10 8 40 40 H 1.08996 * 110.36755 * 85.21760 * 11 10 8 41 41 H 1.09007 * 111.00188 * 204.91482 * 12 11 10 42 42 H 1.09000 * 111.00594 * 81.06602 * 12 11 10 43 43 H 0.97004 * 119.99742 * 271.47386 * 15 13 12 44 44 H 0.97000 * 120.00057 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.47106 * 170.76794 * 26 24 10 46 46 H 1.09008 * 109.47272 * 290.76466 * 26 24 10 47 47 H 1.09000 * 109.47508 * 50.76464 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 3.9954 0.1611 1.0529 7 6 3.9649 -1.7253 0.0129 8 6 4.0772 -1.4302 2.4725 9 8 3.2962 -1.8530 3.2984 10 7 5.4034 -1.4964 2.7032 11 6 6.0434 -2.1612 3.8529 12 6 7.4152 -1.4577 4.0045 13 6 7.8075 -1.2176 2.5227 14 1 8.2620 -2.1097 2.0919 15 7 8.7104 -0.0699 2.4051 16 6 10.0660 -0.2577 2.4499 17 1 10.4697 -1.2519 2.5724 18 6 10.9214 0.8304 2.3441 19 7 12.2244 0.6505 2.3928 20 14 10.2232 2.5501 2.1328 21 1 10.0083 3.1646 3.4675 22 1 11.1776 3.3795 1.3540 23 1 8.9289 2.4734 1.4090 24 6 6.4514 -0.9167 1.8505 25 1 6.4199 -1.3706 0.8600 26 6 6.2517 0.5959 1.7360 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6052 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 3.6162 -2.7418 0.1946 37 1 3.5135 -1.3446 -0.9033 38 1 5.0500 -1.7263 -0.0898 39 1 5.4444 -2.0224 4.7530 40 1 6.1802 -3.2231 3.6492 41 1 8.1358 -2.1092 4.4989 42 1 7.3131 -0.5136 4.5396 43 1 8.3478 0.8231 2.2953 44 1 12.8221 1.4108 2.3185 45 1 7.1164 1.0403 1.2433 46 1 5.3550 0.8007 1.1510 47 1 6.1412 1.0242 2.7322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179793557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = -29.721379 kcal Electronic energy + Delta-G solvation = -23739.705232 eV Core-core repulsion = 20536.582301 eV Total energy + Delta-G solvation = -3203.122931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42160 -38.10494 -36.83546 -34.28933 -33.09432 -31.64371 -30.79663 -29.26705 -27.37869 -26.80776 -25.60902 -24.44747 -23.15798 -21.69926 -19.92549 -19.59414 -18.76474 -18.05026 -16.92761 -15.95718 -15.63590 -15.31102 -14.84383 -14.27791 -14.18902 -14.10165 -13.95327 -13.38034 -13.14049 -12.98937 -12.64889 -12.48502 -12.41702 -12.26848 -12.11410 -11.97643 -11.77009 -11.65050 -11.44904 -11.30560 -11.14401 -10.94167 -10.85146 -10.64814 -10.62305 -10.52070 -10.26459 -10.09905 -9.64706 -9.54480 -9.03416 -8.46298 -7.39962 -5.86991 -3.24323 2.75966 3.12422 3.26579 3.31172 3.38032 4.40928 4.48692 4.56219 4.69276 4.83709 4.85973 4.96710 5.05725 5.07375 5.18540 5.30626 5.35240 5.39404 5.42559 5.44582 5.52998 5.57678 5.61570 5.66691 5.72256 5.74947 5.82652 5.83690 5.85753 5.91772 5.99332 6.01092 6.07109 6.11753 6.21112 6.27702 6.31983 6.41877 6.46434 6.56880 6.77738 7.71705 7.88425 8.30722 8.32006 9.08424 9.80361 9.98663 11.30929 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.004483 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.510552 B = 6244.312889 C = 7088.648814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.120 4.120 6 H 0.106 0.894 7 C -0.148 4.148 8 C 0.534 3.466 9 O -0.551 6.551 10 N -0.609 5.609 11 C 0.104 3.896 12 C -0.153 4.153 13 C 0.180 3.820 14 H 0.076 0.924 15 N -0.741 5.741 16 C -0.250 4.250 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.930 5.930 20 Si 0.880 3.120 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.113 3.887 25 H 0.081 0.919 26 C -0.177 4.177 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.367 0.633 44 H 0.261 0.739 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.709 -1.858 -5.219 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.132 4.132 5 C -0.140 4.140 6 H 0.124 0.876 7 C -0.206 4.206 8 C 0.323 3.677 9 O -0.430 6.430 10 N -0.343 5.343 11 C -0.019 4.019 12 C -0.194 4.194 13 C 0.069 3.931 14 H 0.094 0.906 15 N -0.385 5.385 16 C -0.380 4.380 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.577 5.577 20 Si 0.710 3.290 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.203 1.203 24 C 0.009 3.991 25 H 0.099 0.901 26 C -0.235 4.235 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.203 0.797 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.932 -2.155 -4.793 20.613 hybrid contribution -0.219 1.332 -0.050 1.350 sum -20.151 -0.823 -4.844 20.741 Atomic orbital electron populations 1.21820 0.95236 1.01678 1.01614 1.21208 0.95704 0.96386 0.98531 1.21926 1.01272 0.95990 1.01707 1.21451 0.92622 1.01330 0.97763 1.21608 0.97681 1.01566 0.93195 0.87645 1.21883 1.02335 0.99412 0.96925 1.20306 0.80521 0.78683 0.88178 1.90658 1.55104 1.49583 1.47622 1.48595 1.04954 1.54887 1.25828 1.22254 0.94176 0.96328 0.89121 1.23517 0.94293 1.00896 1.00714 1.21136 0.87433 0.92206 0.92325 0.90595 1.43001 1.03365 1.03654 1.88493 1.19074 0.80134 0.95759 1.42985 0.88998 1.24660 0.95076 0.97321 1.01674 1.69692 1.01173 1.30191 1.56621 0.86664 0.78145 0.86202 0.78022 1.20950 1.21526 1.20281 1.22044 0.88750 0.93848 0.94468 0.90116 1.22424 1.02463 0.95888 1.02705 0.92720 0.92823 0.92724 0.90823 0.92408 0.92783 0.92664 0.91318 0.91394 0.92294 0.91221 0.91509 0.91069 0.91762 0.90121 0.90927 0.79655 0.92901 0.89820 0.92290 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.80 16 2 C -0.10 -0.86 2.79 -90.62 -0.25 -1.11 16 3 C -0.15 -1.28 8.95 37.15 0.33 -0.95 16 4 C -0.09 -1.02 3.45 -26.73 -0.09 -1.11 16 5 C -0.12 -1.39 1.92 -91.77 -0.18 -1.56 16 6 H 0.11 1.17 3.13 -51.93 -0.16 1.01 16 7 C -0.15 -1.49 8.92 37.16 0.33 -1.15 16 8 C 0.53 8.02 6.89 -10.99 -0.08 7.95 16 9 O -0.55 -9.98 16.23 5.56 0.09 -9.89 16 10 N -0.61 -8.99 3.08 -163.02 -0.50 -9.49 16 11 C 0.10 1.53 6.94 -2.53 -0.02 1.51 16 12 C -0.15 -2.47 6.77 -24.58 -0.17 -2.64 16 13 C 0.18 3.16 3.49 -66.10 -0.23 2.93 16 14 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 15 N -0.74 -16.05 4.71 -51.66 -0.24 -16.30 16 16 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 17 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.15 13.97 55.49 0.78 -27.37 16 20 Si 0.88 21.01 27.73 -169.99 -4.71 16.30 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.05 6.25 56.52 0.35 -5.70 16 24 C 0.11 1.67 2.98 -66.96 -0.20 1.47 16 25 H 0.08 1.09 5.77 -51.93 -0.30 0.79 16 26 C -0.18 -2.56 8.02 37.15 0.30 -2.26 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.60 6.24 -51.93 -0.32 0.27 16 31 H 0.06 0.50 6.46 -51.93 -0.34 0.17 16 32 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.58 6.23 -51.93 -0.32 0.25 16 38 H 0.07 0.69 5.50 -51.93 -0.29 0.40 16 39 H 0.07 1.07 7.98 -51.93 -0.41 0.65 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.37 7.78 2.84 -40.82 -0.12 7.67 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.08 1.35 5.99 -51.93 -0.31 1.04 16 46 H 0.06 0.71 5.04 -51.92 -0.26 0.45 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -30.54 349.71 -7.41 -37.95 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.93 Total: 7.88 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.16 Total: -4.35 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.03 Total: -53.16 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.54 -7.41 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179793557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.231 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds