Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46993 * 2 1 4 4 C 1.53009 * 109.46927 * 120.00189 * 2 1 3 5 5 C 1.50706 * 109.46492 * 175.00055 * 4 2 1 6 6 O 1.21272 * 120.00331 * 0.02562 * 5 4 2 7 7 N 1.34785 * 119.99500 * 179.97438 * 5 4 2 8 8 C 1.48146 * 127.83657 * 0.02562 * 7 5 4 9 9 C 1.54389 * 104.71947 * 219.64948 * 8 7 5 10 10 H 1.09003 * 110.34006 * 95.05014 * 9 8 7 11 11 C 1.52994 * 110.34346 * 217.20744 * 9 8 7 12 12 C 1.54289 * 104.96102 * 336.07694 * 9 8 7 13 13 C 1.52997 * 110.34219 * 241.02302 * 12 9 8 14 14 C 1.53002 * 110.34304 * 118.86760 * 12 9 8 15 15 N 1.46503 * 109.46867 * 180.02562 * 14 12 9 16 16 C 1.36939 * 119.99725 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31611 * 120.00321 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47216 * 89.99882 * 20 18 16 22 22 H 1.48500 * 109.47424 * 209.99809 * 20 18 16 23 23 H 1.48498 * 109.47203 * 330.00041 * 20 18 16 24 24 C 1.48427 * 127.97962 * 180.11990 * 7 5 4 25 25 H 1.09001 * 109.46943 * 299.99659 * 1 2 3 26 26 H 1.08999 * 109.47415 * 60.00329 * 1 2 3 27 27 H 1.09004 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47044 * 239.99564 * 2 1 3 29 29 H 1.09000 * 109.47444 * 299.99743 * 3 2 1 30 30 H 1.09001 * 109.46998 * 60.00374 * 3 2 1 31 31 H 1.09003 * 109.46679 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47290 * 54.99837 * 4 2 1 33 33 H 1.08997 * 109.47071 * 294.99361 * 4 2 1 34 34 H 1.09002 * 110.40776 * 100.80694 * 8 7 5 35 35 H 1.09002 * 110.40863 * 338.49103 * 8 7 5 36 36 H 1.09001 * 109.47260 * 58.54481 * 11 9 8 37 37 H 1.09000 * 109.47306 * 178.54617 * 11 9 8 38 38 H 1.09004 * 109.46825 * 298.54469 * 11 9 8 39 39 H 1.09006 * 109.47231 * 60.00142 * 13 12 9 40 40 H 1.08999 * 109.46728 * 179.97438 * 13 12 9 41 41 H 1.08997 * 109.47355 * 299.99919 * 13 12 9 42 42 H 1.08994 * 109.47149 * 300.00171 * 14 12 9 43 43 H 1.08998 * 109.46904 * 60.00090 * 14 12 9 44 44 H 0.96998 * 119.99968 * 0.02562 * 15 14 12 45 45 H 0.97004 * 120.00643 * 180.02562 * 19 18 16 46 46 H 1.09004 * 110.39413 * 21.57126 * 24 7 5 47 47 H 1.09006 * 110.49084 * 259.21157 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1888 6 8 4.1450 -0.3740 0.2404 7 7 4.2150 -1.4314 2.1895 8 6 3.6596 -2.0424 3.4195 9 6 4.6522 -1.6501 4.5351 10 1 4.3099 -0.7512 5.0478 11 6 4.8149 -2.8001 5.5309 12 6 5.9847 -1.3797 3.8057 13 6 7.0666 -2.3417 4.3005 14 6 6.4242 0.0699 4.0208 15 7 7.6892 0.3056 3.3205 16 6 8.2800 1.5400 3.3710 17 1 7.8136 2.3395 3.9274 18 6 9.4789 1.7632 2.7079 19 7 10.0466 2.9497 2.7560 20 14 10.2860 0.3801 1.7462 21 1 9.7942 0.3987 0.3451 22 1 11.7595 0.5644 1.7560 23 1 9.9459 -0.9226 2.3728 24 6 5.6804 -1.6324 2.3132 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1584 2.1370 34 1 3.6120 -3.1266 3.3172 35 1 2.6701 -1.6376 3.6316 36 1 5.1694 -3.6875 5.0064 37 1 5.5372 -2.5180 6.2970 38 1 3.8539 -3.0143 5.9988 39 1 6.7567 -3.3684 4.1057 40 1 8.0005 -2.1387 3.7763 41 1 7.2134 -2.2035 5.3717 42 1 5.6615 0.7428 3.6290 43 1 6.5586 0.2544 5.0866 44 1 8.1083 -0.4126 2.8212 45 1 10.8842 3.1059 2.2923 46 1 6.2160 -0.9165 1.6897 47 1 5.9503 -2.6520 2.0376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180430669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = -35.058410 kcal Electronic energy + Delta-G solvation = -23741.724706 eV Core-core repulsion = 20538.370344 eV Total energy + Delta-G solvation = -3203.354362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37328 -38.62504 -35.53868 -34.88974 -33.29200 -31.62865 -30.07634 -28.78440 -27.14537 -26.86164 -25.73417 -25.43041 -23.02929 -21.09575 -20.51659 -19.05503 -18.52766 -17.71999 -16.73365 -15.95858 -15.82370 -14.83433 -14.76983 -14.55915 -14.13387 -13.93874 -13.78229 -13.68382 -13.21934 -12.79085 -12.71465 -12.49685 -12.30040 -12.03391 -11.94797 -11.93512 -11.66912 -11.52953 -11.40519 -11.26408 -11.11475 -10.91180 -10.85373 -10.74223 -10.52563 -10.33108 -10.20937 -9.96410 -9.55111 -9.50429 -8.85238 -8.57075 -7.17662 -5.71939 -3.06843 2.78391 3.03816 3.39790 3.44690 3.49389 4.41472 4.53059 4.63910 4.68606 4.71807 4.81695 4.87335 5.16503 5.20120 5.30061 5.32586 5.38791 5.40718 5.47087 5.48204 5.53935 5.60933 5.65106 5.66724 5.73718 5.77644 5.84524 5.86449 5.90215 5.95739 6.04029 6.08638 6.13158 6.25788 6.31107 6.31633 6.42582 6.53557 6.56683 6.68226 6.78550 7.70636 8.03901 8.33462 8.46923 9.25958 9.98412 10.18009 11.46756 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.005483 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.793100 B = 5105.128415 C = 6365.657603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.155 4.155 4 C -0.130 4.130 5 C 0.530 3.470 6 O -0.531 6.531 7 N -0.623 5.623 8 C 0.106 3.894 9 C -0.097 4.097 10 H 0.084 0.916 11 C -0.142 4.142 12 C -0.081 4.081 13 C -0.135 4.135 14 C 0.174 3.826 15 N -0.753 5.753 16 C -0.241 4.241 17 H 0.089 0.911 18 C 0.006 3.994 19 N -0.935 5.935 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.111 3.889 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.026 0.974 43 H 0.028 0.972 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 -13.854 2.014 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.212 4.212 4 C -0.170 4.170 5 C 0.320 3.680 6 O -0.407 6.407 7 N -0.357 5.357 8 C -0.018 4.018 9 C -0.117 4.117 10 H 0.102 0.898 11 C -0.199 4.199 12 C -0.082 4.082 13 C -0.193 4.193 14 C 0.047 3.953 15 N -0.399 5.399 16 C -0.371 4.371 17 H 0.107 0.893 18 C -0.190 4.190 19 N -0.583 5.583 20 Si 0.711 3.289 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.012 4.012 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.194 0.806 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.897 -13.299 1.445 23.153 hybrid contribution 0.693 -0.881 -0.586 1.265 sum -18.204 -14.180 0.859 23.091 Atomic orbital electron populations 1.21858 0.95110 1.01452 1.01956 1.20873 0.94831 0.97181 0.97110 1.21972 1.03662 0.94675 1.00922 1.21740 0.91865 1.02516 1.00904 1.20326 0.89704 0.76870 0.81136 1.90710 1.70261 1.46938 1.32785 1.49043 1.08387 1.57561 1.20719 1.22475 0.97513 0.97759 0.84023 1.22131 0.94642 0.99531 0.95395 0.89790 1.21895 1.01487 0.97749 0.98802 1.21766 0.94605 0.97893 0.93930 1.21895 0.98288 0.97330 1.01779 1.20619 0.88427 0.90668 0.95587 1.42739 1.23694 1.11545 1.61922 1.19033 1.03036 0.88014 1.27043 0.89340 1.24634 0.97674 0.96288 1.00390 1.69694 1.19949 1.20848 1.47816 0.86607 0.79018 0.82456 0.80819 1.20945 1.21702 1.20359 1.22555 0.80589 1.01299 0.96740 0.92669 0.92430 0.92880 0.90531 0.93021 0.93349 0.90336 0.89361 0.89075 0.91179 0.90595 0.92139 0.91725 0.92945 0.92844 0.92062 0.91765 0.95660 0.95394 0.80585 0.93109 0.88823 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.86 16 2 C -0.08 -0.89 2.57 -90.62 -0.23 -1.13 16 3 C -0.16 -1.98 8.93 37.16 0.33 -1.65 16 4 C -0.13 -1.39 4.15 -27.88 -0.12 -1.50 16 5 C 0.53 8.04 7.64 -10.98 -0.08 7.96 16 6 O -0.53 -10.39 14.25 5.56 0.08 -10.31 16 7 N -0.62 -8.73 3.33 -169.06 -0.56 -9.30 16 8 C 0.11 1.06 6.45 -2.41 -0.02 1.04 16 9 C -0.10 -1.07 3.30 -89.22 -0.29 -1.37 16 10 H 0.08 0.96 7.72 -51.93 -0.40 0.56 16 11 C -0.14 -1.23 7.93 37.15 0.29 -0.94 16 12 C -0.08 -1.19 0.74 -153.10 -0.11 -1.30 16 13 C -0.14 -1.86 7.11 37.16 0.26 -1.60 16 14 C 0.17 3.41 4.95 -4.04 -0.02 3.39 16 15 N -0.75 -18.24 4.59 -59.91 -0.27 -18.51 16 16 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -30.16 13.97 55.49 0.78 -29.38 16 20 Si 0.88 22.82 27.74 -169.99 -4.71 18.11 16 21 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 24 C 0.11 1.76 5.93 -2.25 -0.01 1.74 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.29 5.95 -51.93 -0.31 0.98 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.86 7.95 -51.93 -0.41 0.44 16 34 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 35 H 0.08 0.61 7.30 -51.93 -0.38 0.23 16 36 H 0.06 0.50 6.62 -51.93 -0.34 0.16 16 37 H 0.06 0.59 6.98 -51.93 -0.36 0.23 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.60 6.68 -51.93 -0.35 0.25 16 40 H 0.06 1.00 6.75 -51.93 -0.35 0.65 16 41 H 0.06 0.84 6.89 -51.93 -0.36 0.48 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.36 8.54 3.85 -40.82 -0.16 8.38 16 45 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 46 H 0.09 1.88 6.95 -51.93 -0.36 1.52 16 47 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -34.31 356.38 -7.64 -41.95 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.40 Total: 5.41 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 0.09 Total: -3.33 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.06 Total: -57.19 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.31 -7.64 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180430669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.888 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds