Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.30773 * 2 1 4 4 C 1.54384 * 110.34513 * 237.70497 * 2 1 3 5 5 N 1.48144 * 104.61940 * 265.00249 * 4 2 1 6 6 C 1.34776 * 127.84226 * 140.43677 * 5 4 2 7 7 O 1.21277 * 120.00281 * 175.36391 * 6 5 4 8 8 C 1.50702 * 119.99812 * 355.36271 * 6 5 4 9 9 C 1.52997 * 109.47246 * 176.78915 * 8 6 5 10 10 C 1.52998 * 109.47131 * 296.79452 * 8 6 5 11 11 C 1.53008 * 109.46587 * 56.79306 * 8 6 5 12 12 C 1.48150 * 104.32185 * 320.40944 * 5 4 2 13 13 C 1.54292 * 110.33874 * 122.16977 * 2 1 3 14 14 C 1.52997 * 110.34469 * 359.97438 * 13 2 1 15 15 C 1.52997 * 110.34130 * 237.84861 * 13 2 1 16 16 N 1.46500 * 109.47269 * 181.47590 * 15 13 2 17 17 C 1.36931 * 120.00270 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00182 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99945 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00291 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46864 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46871 * 119.99875 * 21 19 17 24 24 H 1.48496 * 109.47142 * 239.99887 * 21 19 17 25 25 H 1.09001 * 109.47432 * 297.83027 * 1 2 3 26 26 H 1.09000 * 109.46887 * 57.82929 * 1 2 3 27 27 H 1.08995 * 109.47304 * 177.82948 * 1 2 3 28 28 H 1.09000 * 110.40471 * 23.78564 * 4 2 1 29 29 H 1.08997 * 110.40537 * 146.09644 * 4 2 1 30 30 H 1.09005 * 109.46576 * 59.99981 * 9 8 6 31 31 H 1.08992 * 109.47355 * 180.02562 * 9 8 6 32 32 H 1.09007 * 109.47127 * 300.00959 * 9 8 6 33 33 H 1.08999 * 109.47060 * 53.83221 * 10 8 6 34 34 H 1.09001 * 109.47102 * 173.82917 * 10 8 6 35 35 H 1.08998 * 109.46988 * 293.82925 * 10 8 6 36 36 H 1.08996 * 109.47465 * 60.00046 * 11 8 6 37 37 H 1.09003 * 109.46279 * 180.02562 * 11 8 6 38 38 H 1.09002 * 109.46997 * 299.99392 * 11 8 6 39 39 H 1.08999 * 110.41338 * 280.80502 * 12 5 4 40 40 H 1.08996 * 110.40662 * 158.36846 * 12 5 4 41 41 H 1.09007 * 109.46969 * 59.99561 * 14 13 2 42 42 H 1.09007 * 109.47473 * 300.00324 * 14 13 2 43 43 H 1.08992 * 109.47403 * 179.97438 * 14 13 2 44 44 H 1.09001 * 109.47124 * 301.47209 * 15 13 2 45 45 H 1.09004 * 109.47406 * 61.47389 * 15 13 2 46 46 H 0.97003 * 119.99703 * 359.97438 * 16 15 13 47 47 H 0.97003 * 120.00247 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7734 -1.2236 5 7 2.3139 -2.1446 -0.7203 6 6 2.0777 -3.3120 -1.3511 7 8 2.4132 -4.3579 -0.8369 8 6 1.3966 -3.3177 -2.6954 9 6 1.3224 -4.7517 -3.2235 10 6 -0.0181 -2.7528 -2.5528 11 6 2.1943 -2.4542 -3.6748 12 6 2.8801 -1.9416 0.6336 13 6 2.0663 -0.7703 1.2246 14 6 0.9061 -1.3008 2.0692 15 6 2.9670 0.1336 2.0688 16 7 3.4932 -0.6259 3.2057 17 6 4.3294 -0.0206 4.1053 18 1 4.6013 1.0166 3.9767 19 6 4.8275 -0.7402 5.1828 20 7 4.4958 -2.0041 5.3400 21 14 5.9677 0.0858 6.4106 22 1 6.1835 1.4998 6.0120 23 1 5.3557 0.0400 7.7629 24 1 7.2707 -0.6262 6.4327 25 1 -0.3634 0.4798 0.9088 26 1 -0.3633 0.5472 -0.8699 27 1 -0.3633 -1.0269 -0.0389 28 1 1.3224 -0.7891 -2.0197 29 1 2.9939 -0.3246 -1.5801 30 1 0.7542 -5.3668 -2.5257 31 1 0.8302 -4.7558 -4.1960 32 1 2.3304 -5.1542 -3.3250 33 1 0.0280 -1.7741 -2.0750 34 1 -0.4712 -2.6545 -3.5393 35 1 -0.6188 -3.4272 -1.9426 36 1 3.2022 -2.8566 -3.7764 37 1 1.7014 -2.4580 -4.6470 38 1 2.2472 -1.4325 -3.2986 39 1 3.9354 -1.6765 0.5685 40 1 2.7493 -2.8386 1.2387 41 1 0.2952 -1.9726 1.4662 42 1 0.2959 -0.4658 2.4137 43 1 1.3004 -1.8422 2.9290 44 1 3.7949 0.4939 1.4582 45 1 2.3893 0.9823 2.4350 46 1 3.2492 -1.5577 3.3211 47 1 4.8442 -2.5071 6.0928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183248778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -29.967358 kcal Electronic energy + Delta-G solvation = -24117.862424 eV Core-core repulsion = 20914.728827 eV Total energy + Delta-G solvation = -3203.133597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67217 -38.56975 -35.74155 -34.71185 -33.02116 -31.50407 -29.65214 -27.72775 -27.56049 -27.14967 -25.65093 -25.44255 -23.48368 -22.01295 -20.85511 -18.88217 -18.40759 -17.13780 -16.44440 -15.92214 -15.54557 -14.87917 -14.50471 -14.29521 -14.18690 -13.86223 -13.51355 -13.34822 -13.14676 -12.97145 -12.62757 -12.54473 -12.41472 -12.29439 -11.99187 -11.86075 -11.75936 -11.55485 -11.34547 -11.21436 -11.10369 -11.00096 -10.81210 -10.76193 -10.32700 -10.28195 -10.15529 -9.85262 -9.59811 -9.47802 -8.86394 -8.50099 -6.89657 -5.73924 -3.02768 2.77437 3.08800 3.44926 3.50195 3.52762 4.33327 4.54515 4.59823 4.62284 4.70686 4.79940 4.92163 5.10861 5.28203 5.31859 5.39747 5.41939 5.45382 5.50302 5.53859 5.58525 5.62647 5.65214 5.69879 5.76483 5.81423 5.89724 5.94280 6.00683 6.04615 6.10747 6.12159 6.19026 6.21862 6.26500 6.31021 6.46125 6.62986 6.71134 6.79632 6.89093 7.72319 7.74855 8.32356 8.44546 9.55972 10.13670 10.48049 11.48827 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.004241 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.800781 B = 6601.008134 C = 7078.291781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.095 3.905 5 N -0.617 5.617 6 C 0.539 3.461 7 O -0.540 6.540 8 C -0.082 4.082 9 C -0.126 4.126 10 C -0.148 4.148 11 C -0.151 4.151 12 C 0.119 3.881 13 C -0.074 4.074 14 C -0.132 4.132 15 C 0.168 3.832 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.022 0.978 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.345 2.411 -19.537 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.028 4.028 5 N -0.350 5.350 6 C 0.328 3.672 7 O -0.417 6.417 8 C -0.086 4.086 9 C -0.184 4.184 10 C -0.205 4.205 11 C -0.208 4.208 12 C -0.003 4.003 13 C -0.075 4.075 14 C -0.189 4.189 15 C 0.040 3.960 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.220 0.780 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.077 1.855 -19.228 21.788 hybrid contribution 0.682 0.192 0.842 1.101 sum -9.395 2.047 -18.386 20.748 Atomic orbital electron populations 1.21945 0.94647 1.01857 1.01619 1.22165 0.96196 0.99534 0.94004 0.89440 1.22790 1.00673 0.82225 0.97091 1.48965 1.62921 1.05155 1.17991 1.20158 0.78629 0.82038 0.86389 1.90711 1.52455 1.30942 1.67580 1.20742 0.96456 0.98505 0.92855 1.21656 1.02791 0.93606 1.00340 1.22047 0.94124 1.01767 1.02605 1.22113 1.00149 0.99994 0.98583 1.22456 0.97227 0.98830 0.81752 1.21694 0.96205 0.95169 0.94460 1.21863 0.96865 1.00584 0.99580 1.20706 0.93494 0.92903 0.88870 1.42408 1.56693 1.12002 1.26457 1.19252 1.20034 0.95226 1.02602 0.91192 1.24732 1.01089 0.95981 0.99071 1.69668 1.48704 1.07780 1.31844 0.86143 0.80464 0.78359 0.81371 1.20601 1.21912 1.21911 0.91785 0.93181 0.92326 0.89475 0.91055 0.91879 0.92204 0.92050 0.91179 0.91564 0.92035 0.92126 0.91588 0.91220 0.90592 0.89836 0.93466 0.92475 0.91500 0.96261 0.96009 0.78049 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 7.44 37.16 0.28 -1.17 16 2 C -0.10 -1.16 3.31 -89.22 -0.30 -1.45 16 3 H 0.09 0.96 7.71 -51.93 -0.40 0.56 16 4 C 0.10 1.03 4.35 -2.41 -0.01 1.02 16 5 N -0.62 -8.80 3.29 -169.31 -0.56 -9.36 16 6 C 0.54 8.20 6.62 -10.98 -0.07 8.12 16 7 O -0.54 -10.60 16.28 5.56 0.09 -10.51 16 8 C -0.08 -0.89 0.75 -155.66 -0.12 -1.01 16 9 C -0.13 -1.33 7.77 37.16 0.29 -1.05 16 10 C -0.15 -1.31 8.25 37.16 0.31 -1.00 16 11 C -0.15 -1.31 8.20 37.16 0.30 -1.01 16 12 C 0.12 2.05 5.62 -2.41 -0.01 2.03 16 13 C -0.07 -1.16 0.73 -153.11 -0.11 -1.27 16 14 C -0.13 -2.11 7.10 37.16 0.26 -1.85 16 15 C 0.17 3.25 4.86 -4.04 -0.02 3.23 16 16 N -0.73 -18.17 5.11 -59.91 -0.31 -18.47 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H 0.06 0.67 6.80 -51.93 -0.35 0.32 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.63 6.22 -51.93 -0.32 0.30 16 28 H 0.09 0.75 3.66 -51.93 -0.19 0.56 16 29 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 33 H 0.07 0.60 4.18 -51.93 -0.22 0.38 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.56 4.71 -51.93 -0.24 0.31 16 39 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 40 H 0.08 1.67 7.64 -51.93 -0.40 1.27 16 41 H 0.05 0.70 6.80 -51.92 -0.35 0.35 16 42 H 0.06 0.86 6.80 -51.93 -0.35 0.50 16 43 H 0.07 1.28 6.83 -51.93 -0.35 0.93 16 44 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.17 6.22 -40.82 -0.25 9.92 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -32.50 350.06 -7.28 -39.78 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.04 Total: 6.17 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 0.55 Total: -2.69 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.14 Total: -55.54 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.50 -7.28 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183248778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.816 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds