Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.30773 * 2 1 4 4 C 1.54384 * 110.34513 * 237.70497 * 2 1 3 5 5 N 1.48144 * 104.61940 * 265.00249 * 4 2 1 6 6 C 1.34776 * 127.84226 * 140.43677 * 5 4 2 7 7 O 1.21277 * 120.00281 * 175.36391 * 6 5 4 8 8 C 1.50702 * 119.99812 * 355.36271 * 6 5 4 9 9 C 1.52997 * 109.47246 * 176.78915 * 8 6 5 10 10 C 1.52998 * 109.47131 * 296.79452 * 8 6 5 11 11 C 1.53008 * 109.46587 * 56.79306 * 8 6 5 12 12 C 1.48150 * 104.32185 * 320.40944 * 5 4 2 13 13 C 1.54292 * 110.33874 * 122.16977 * 2 1 3 14 14 C 1.52997 * 110.34469 * 359.97438 * 13 2 1 15 15 C 1.52997 * 110.34130 * 237.84861 * 13 2 1 16 16 N 1.46500 * 109.47269 * 181.47590 * 15 13 2 17 17 C 1.36931 * 120.00270 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00182 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99945 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00291 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46864 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46871 * 119.99875 * 21 19 17 24 24 H 1.48496 * 109.47142 * 239.99887 * 21 19 17 25 25 H 1.09001 * 109.47432 * 297.83027 * 1 2 3 26 26 H 1.09000 * 109.46887 * 57.82929 * 1 2 3 27 27 H 1.08995 * 109.47304 * 177.82948 * 1 2 3 28 28 H 1.09000 * 110.40471 * 23.78564 * 4 2 1 29 29 H 1.08997 * 110.40537 * 146.09644 * 4 2 1 30 30 H 1.09005 * 109.46576 * 59.99981 * 9 8 6 31 31 H 1.08992 * 109.47355 * 180.02562 * 9 8 6 32 32 H 1.09007 * 109.47127 * 300.00959 * 9 8 6 33 33 H 1.08999 * 109.47060 * 53.83221 * 10 8 6 34 34 H 1.09001 * 109.47102 * 173.82917 * 10 8 6 35 35 H 1.08998 * 109.46988 * 293.82925 * 10 8 6 36 36 H 1.08996 * 109.47465 * 60.00046 * 11 8 6 37 37 H 1.09003 * 109.46279 * 180.02562 * 11 8 6 38 38 H 1.09002 * 109.46997 * 299.99392 * 11 8 6 39 39 H 1.08999 * 110.41338 * 280.80502 * 12 5 4 40 40 H 1.08996 * 110.40662 * 158.36846 * 12 5 4 41 41 H 1.09007 * 109.46969 * 59.99561 * 14 13 2 42 42 H 1.09007 * 109.47473 * 300.00324 * 14 13 2 43 43 H 1.08992 * 109.47403 * 179.97438 * 14 13 2 44 44 H 1.09001 * 109.47124 * 301.47209 * 15 13 2 45 45 H 1.09004 * 109.47406 * 61.47389 * 15 13 2 46 46 H 0.97003 * 119.99703 * 359.97438 * 16 15 13 47 47 H 0.97003 * 120.00247 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7734 -1.2236 5 7 2.3139 -2.1446 -0.7203 6 6 2.0777 -3.3120 -1.3511 7 8 2.4132 -4.3579 -0.8369 8 6 1.3966 -3.3177 -2.6954 9 6 1.3224 -4.7517 -3.2235 10 6 -0.0181 -2.7528 -2.5528 11 6 2.1943 -2.4542 -3.6748 12 6 2.8801 -1.9416 0.6336 13 6 2.0663 -0.7703 1.2246 14 6 0.9061 -1.3008 2.0692 15 6 2.9670 0.1336 2.0688 16 7 3.4932 -0.6259 3.2057 17 6 4.3294 -0.0206 4.1053 18 1 4.6013 1.0166 3.9767 19 6 4.8275 -0.7402 5.1828 20 7 4.4958 -2.0041 5.3400 21 14 5.9677 0.0858 6.4106 22 1 6.1835 1.4998 6.0120 23 1 5.3557 0.0400 7.7629 24 1 7.2707 -0.6262 6.4327 25 1 -0.3634 0.4798 0.9088 26 1 -0.3633 0.5472 -0.8699 27 1 -0.3633 -1.0269 -0.0389 28 1 1.3224 -0.7891 -2.0197 29 1 2.9939 -0.3246 -1.5801 30 1 0.7542 -5.3668 -2.5257 31 1 0.8302 -4.7558 -4.1960 32 1 2.3304 -5.1542 -3.3250 33 1 0.0280 -1.7741 -2.0750 34 1 -0.4712 -2.6545 -3.5393 35 1 -0.6188 -3.4272 -1.9426 36 1 3.2022 -2.8566 -3.7764 37 1 1.7014 -2.4580 -4.6470 38 1 2.2472 -1.4325 -3.2986 39 1 3.9354 -1.6765 0.5685 40 1 2.7493 -2.8386 1.2387 41 1 0.2952 -1.9726 1.4662 42 1 0.2959 -0.4658 2.4137 43 1 1.3004 -1.8422 2.9290 44 1 3.7949 0.4939 1.4582 45 1 2.3893 0.9823 2.4350 46 1 3.2492 -1.5577 3.3211 47 1 4.8442 -2.5071 6.0928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183248778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -51.229430 kcal Electronic energy + Delta-G solvation = -24118.784417 eV Core-core repulsion = 20914.728827 eV Total energy + Delta-G solvation = -3204.055590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81944 -39.78783 -36.83578 -36.35780 -34.46031 -33.07133 -31.25750 -28.78698 -28.29891 -28.10207 -27.22228 -26.56118 -25.21451 -23.30937 -21.97990 -20.01461 -19.81841 -18.90743 -17.63391 -17.20276 -16.60463 -16.49596 -15.85184 -15.60062 -15.51421 -15.01285 -14.84812 -14.58863 -14.48363 -14.23254 -13.95395 -13.67181 -13.24050 -13.14394 -13.06735 -12.99519 -12.92023 -12.77628 -12.66576 -12.59466 -12.48940 -12.36178 -12.07247 -11.95916 -11.90578 -11.67832 -11.44904 -11.34517 -11.08590 -10.95254 -10.64995 -9.73026 -8.98237 -7.94348 -5.22957 1.46272 1.47394 1.57422 1.60672 1.94683 2.55923 3.32959 3.39979 3.55970 3.60508 3.79321 3.86458 3.95109 4.18303 4.23080 4.25318 4.30278 4.35526 4.51242 4.61021 4.68121 4.71181 4.72993 4.77575 4.79674 4.84768 4.89326 4.93338 4.95778 5.01940 5.03965 5.06027 5.09741 5.14849 5.22186 5.27750 5.35343 5.38010 5.39491 5.47158 5.51732 5.62822 6.27357 6.61243 7.13668 7.33732 8.11175 8.32746 9.29683 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.004241 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.800781 B = 6601.008134 C = 7078.291781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.106 0.894 4 C 0.094 3.906 5 N -0.613 5.613 6 C 0.527 3.473 7 O -0.599 6.599 8 C -0.077 4.077 9 C -0.126 4.126 10 C -0.145 4.145 11 C -0.148 4.148 12 C 0.123 3.877 13 C -0.065 4.065 14 C -0.123 4.123 15 C 0.167 3.833 16 N -0.745 5.745 17 C -0.240 4.240 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.973 5.973 21 Si 0.973 3.027 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.297 1.297 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.031 0.969 46 H 0.372 0.628 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 5.289 -22.424 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.124 0.876 4 C -0.027 4.027 5 N -0.345 5.345 6 C 0.318 3.682 7 O -0.480 6.480 8 C -0.080 4.080 9 C -0.184 4.184 10 C -0.202 4.202 11 C -0.205 4.205 12 C -0.001 4.001 13 C -0.067 4.067 14 C -0.180 4.180 15 C 0.040 3.960 16 N -0.388 5.388 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.624 5.624 21 Si 0.802 3.198 22 H -0.186 1.186 23 H -0.222 1.222 24 H -0.224 1.224 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.049 0.951 46 H 0.205 0.795 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.533 4.813 -22.166 25.446 hybrid contribution 1.123 -0.706 1.696 2.154 sum -10.410 4.106 -20.469 23.329 Atomic orbital electron populations 1.21938 0.92856 1.01937 1.03104 1.22194 0.97615 0.99713 0.91546 0.87620 1.23092 1.02458 0.79663 0.97505 1.49039 1.62055 1.06766 1.16672 1.21256 0.77901 0.81225 0.87779 1.90680 1.54880 1.33104 1.69334 1.20829 0.97621 0.99344 0.90166 1.21680 1.01804 0.93294 1.01586 1.22067 0.92269 1.01422 1.04408 1.22138 0.99335 0.99687 0.99348 1.22153 0.96785 0.97684 0.83454 1.21569 0.95082 0.94406 0.95611 1.21771 0.97129 1.00804 0.98275 1.20901 0.94156 0.93234 0.87690 1.42656 1.56568 1.11857 1.27677 1.19709 1.19300 0.95566 1.02621 0.90251 1.25577 1.03397 0.96626 1.01424 1.69848 1.50584 1.09455 1.32541 0.85075 0.77916 0.78155 0.78642 1.18614 1.22176 1.22429 0.92177 0.89745 0.93103 0.86071 0.89640 0.93829 0.88738 0.93847 0.90518 0.88271 0.93333 0.93498 0.88472 0.90123 0.92591 0.94104 0.92436 0.90998 0.95669 0.95687 0.95109 0.79534 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.44 71.98 0.54 -1.75 16 2 C -0.09 -1.84 3.31 -9.88 -0.03 -1.88 16 3 H 0.11 1.85 7.71 -2.39 -0.02 1.83 16 4 C 0.09 1.72 4.35 86.53 0.38 2.10 16 5 N -0.61 -17.30 3.29 -807.97 -2.66 -19.96 16 6 C 0.53 16.21 6.62 87.66 0.58 16.79 16 7 O -0.60 -25.08 16.28 -3.02 -0.05 -25.13 16 8 C -0.08 -1.49 0.75 -52.93 -0.04 -1.53 16 9 C -0.13 -2.53 7.77 71.98 0.56 -1.97 16 10 C -0.14 -2.03 8.25 71.98 0.59 -1.43 16 11 C -0.15 -2.03 8.20 71.98 0.59 -1.44 16 12 C 0.12 4.42 5.62 86.53 0.49 4.91 16 13 C -0.07 -2.03 0.73 -51.27 -0.04 -2.07 16 14 C -0.12 -4.01 7.10 71.98 0.51 -3.49 16 15 C 0.17 6.40 4.86 86.38 0.42 6.82 16 16 N -0.74 -38.15 5.11 -343.46 -1.75 -39.90 16 17 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 18 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 20 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 21 Si 0.97 47.06 29.55 68.60 2.03 49.08 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H 0.06 1.05 6.80 -2.39 -0.02 1.03 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.92 6.22 -2.39 -0.01 0.90 16 28 H 0.12 1.45 3.66 -2.39 -0.01 1.44 16 29 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 30 H 0.04 1.03 8.07 -2.38 -0.02 1.01 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.01 8.13 -2.38 -0.02 0.99 16 33 H 0.08 0.96 4.18 -2.39 -0.01 0.95 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.92 4.71 -2.39 -0.01 0.91 16 39 H 0.06 2.20 7.85 -2.39 -0.02 2.18 16 40 H 0.04 1.79 7.64 -2.39 -0.02 1.78 16 41 H 0.06 1.73 6.80 -2.38 -0.02 1.71 16 42 H 0.07 2.10 6.80 -2.38 -0.02 2.09 16 43 H 0.02 1.01 6.83 -2.39 -0.02 0.99 16 44 H 0.03 0.95 8.13 -2.39 -0.02 0.93 16 45 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.37 20.86 6.22 -92.71 -0.58 20.29 16 47 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -76.08 350.06 4.07 -72.01 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.37 Total: 27.18 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.85 Total: -1.77 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -4.13 Total: -121.38 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.08 4.07 -72.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183248778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.782 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds