Wall clock time and date at job start Tue Mar 31 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.46926 * 120.62694 * 359.97438 * 7 5 4 9 9 C 1.53197 * 108.77484 * 126.37299 * 8 7 5 10 10 C 1.53038 * 109.30963 * 54.63204 * 9 8 7 11 11 H 1.09003 * 109.45956 * 58.64809 * 10 9 8 12 12 C 1.53008 * 109.45625 * 178.61668 * 10 9 8 13 13 N 1.46500 * 109.46934 * 295.00008 * 12 10 9 14 14 C 1.36934 * 119.99958 * 180.02562 * 13 12 10 15 15 H 1.08006 * 120.00007 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00354 * 179.97438 * 14 13 12 17 17 N 1.31612 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00135 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47207 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47018 * 120.00550 * 18 16 14 21 21 H 1.48505 * 109.47273 * 240.00210 * 18 16 14 22 22 C 1.53037 * 109.53983 * 298.63302 * 10 9 8 23 23 H 1.08993 * 109.50088 * 301.41801 * 22 10 9 24 24 C 1.53002 * 109.49688 * 181.31473 * 22 10 9 25 25 C 1.46922 * 120.63244 * 179.72194 * 7 5 4 26 26 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 27 27 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 28 28 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 30 30 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 34 34 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 35 35 H 1.09001 * 109.59151 * 246.15628 * 8 7 5 36 36 H 1.09003 * 109.59195 * 6.58462 * 8 7 5 37 37 H 1.09000 * 109.49544 * 174.58699 * 9 8 7 38 38 H 1.08997 * 109.49415 * 294.65077 * 9 8 7 39 39 H 1.09001 * 109.47272 * 55.00017 * 12 10 9 40 40 H 1.09006 * 109.46678 * 175.00445 * 12 10 9 41 41 H 0.96995 * 120.00182 * 359.97438 * 13 12 10 42 42 H 0.97004 * 120.00285 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.46705 * 60.00601 * 24 22 10 44 44 H 1.08999 * 109.47239 * 179.97438 * 24 22 10 45 45 H 1.08999 * 109.47338 * 300.00905 * 24 22 10 46 46 H 1.09003 * 109.58475 * 353.41435 * 25 7 5 47 47 H 1.08996 * 109.58975 * 113.84341 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 8 4.1449 -0.3748 0.2400 7 7 4.2148 -1.4320 2.1892 8 6 3.4981 -1.9879 3.3451 9 6 3.9088 -3.4532 3.5217 10 6 5.4331 -3.5428 3.6247 11 1 5.7759 -2.9430 4.4678 12 6 5.8448 -5.0012 3.8357 13 7 5.3407 -5.4686 5.1294 14 6 5.5883 -6.7521 5.5375 15 1 6.1556 -7.4196 4.9058 16 6 5.1110 -7.1949 6.7635 17 7 4.4201 -6.3812 7.5334 18 14 5.4482 -8.9459 7.3199 19 1 6.2399 -9.6518 6.2804 20 1 6.2127 -8.9223 8.5927 21 1 4.1606 -9.6555 7.5290 22 6 6.0651 -3.0162 2.3342 23 1 5.7034 -3.5997 1.4876 24 6 7.5876 -3.1366 2.4252 25 6 5.6785 -1.5505 2.1417 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.7515 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2953 35 1 3.7582 -1.4251 4.2416 36 1 2.4236 -1.9279 3.1723 37 1 3.4586 -3.8500 4.4316 38 1 3.5669 -4.0327 2.6641 39 1 5.4261 -5.6159 3.0389 40 1 6.9321 -5.0775 3.8204 41 1 4.8321 -4.8688 5.6971 42 1 4.0863 -6.6907 8.3900 43 1 7.8618 -4.1825 2.5633 44 1 8.0373 -2.7619 1.5057 45 1 7.9484 -2.5517 3.2712 46 1 6.0421 -1.2019 1.1751 47 1 6.1197 -0.9513 2.9382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183736616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:47 Heat of formation + Delta-G solvation = -53.535444 kcal Electronic energy + Delta-G solvation = -23102.983294 eV Core-core repulsion = 19898.827708 eV Total energy + Delta-G solvation = -3204.155586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40686 -38.27886 -35.71874 -34.95000 -33.59533 -31.97366 -30.31841 -28.89534 -27.24934 -26.88784 -26.00789 -23.70626 -22.49551 -21.44988 -20.69438 -19.73522 -18.81689 -17.27434 -16.88847 -16.16485 -15.64723 -15.00463 -14.73692 -14.37349 -14.04861 -14.01094 -13.84095 -13.53984 -13.37523 -13.03693 -12.59769 -12.51297 -12.39550 -12.30203 -12.04172 -11.91569 -11.77976 -11.63873 -11.19829 -11.02309 -10.98156 -10.88237 -10.83728 -10.81815 -10.37755 -10.25023 -10.16692 -9.94835 -9.63776 -9.59953 -8.87295 -8.54984 -6.91201 -5.78049 -3.05720 2.63037 3.00447 3.42122 3.48215 3.50109 4.43700 4.57838 4.59188 4.74582 4.83431 4.94693 4.99176 5.10763 5.14293 5.31828 5.33107 5.40611 5.45668 5.50658 5.52859 5.54069 5.57617 5.71006 5.72676 5.80526 5.83088 5.88146 5.92073 5.96099 6.00330 6.08705 6.19475 6.24202 6.29460 6.29724 6.34290 6.47822 6.52799 6.65183 6.83755 6.93648 7.43005 7.69943 8.18874 8.41497 9.52732 10.11198 10.45834 11.45057 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024790 B = 0.003440 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.198297 B = 8136.474971 C = 8940.977369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.152 4.152 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.547 6.547 7 N -0.610 5.610 8 C 0.105 3.895 9 C -0.126 4.126 10 C -0.089 4.089 11 H 0.072 0.928 12 C 0.156 3.844 13 N -0.732 5.732 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.097 4.097 23 H 0.071 0.929 24 C -0.147 4.147 25 C 0.117 3.883 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.024 0.976 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 13.952 -12.504 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.425 6.425 7 N -0.343 5.343 8 C -0.018 4.018 9 C -0.164 4.164 10 C -0.107 4.107 11 H 0.090 0.910 12 C 0.029 3.971 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.117 4.117 23 H 0.090 0.910 24 C -0.204 4.204 25 C -0.005 4.005 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.016 14.025 -13.001 19.541 hybrid contribution -0.066 -0.947 0.789 1.234 sum -4.082 13.078 -12.213 18.354 Atomic orbital electron populations 1.21867 0.95025 1.01788 1.01874 1.20865 0.94986 0.96848 0.97267 1.21954 1.03140 0.95032 1.00840 1.21816 0.92266 1.02944 1.00731 1.20699 0.90166 0.77181 0.81599 1.90628 1.70414 1.48294 1.33154 1.48208 1.07589 1.57174 1.21294 1.21888 0.96584 0.95265 0.88058 1.21935 0.96672 0.94317 1.03505 1.21332 0.94527 0.98308 0.96579 0.91008 1.20760 0.96472 0.90666 0.89222 1.42385 1.65435 1.12452 1.17358 1.19277 1.27965 0.88905 1.00624 0.91247 1.24718 1.00964 0.98090 0.97297 1.69657 1.41652 1.34818 1.12199 0.86135 0.77351 0.84523 0.78306 1.20600 1.21904 1.21900 1.21383 0.96212 0.95379 0.98724 0.91020 1.21830 0.94383 1.02942 1.01281 1.21589 0.79404 0.96578 1.02923 0.92651 0.92493 0.92617 0.90525 0.93104 0.93462 0.90716 0.88990 0.88835 0.91144 0.89912 0.89281 0.91812 0.96598 0.95810 0.78330 0.93615 0.91335 0.93032 0.92525 0.89335 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.08 -0.77 2.57 -90.62 -0.23 -1.01 16 3 C -0.15 -1.51 8.93 37.16 0.33 -1.18 16 4 C -0.14 -1.33 3.52 -27.88 -0.10 -1.43 16 5 C 0.51 6.59 7.41 -10.98 -0.08 6.51 16 6 O -0.55 -8.55 13.38 5.56 0.07 -8.47 16 7 N -0.61 -7.56 2.98 -173.01 -0.52 -8.08 16 8 C 0.10 1.20 6.34 -3.71 -0.02 1.17 16 9 C -0.13 -1.80 5.25 -26.61 -0.14 -1.94 16 10 C -0.09 -1.36 1.73 -90.58 -0.16 -1.52 16 11 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 12 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 13 N -0.73 -18.00 5.32 -59.90 -0.32 -18.32 16 14 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 18 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.10 -1.29 2.40 -90.70 -0.22 -1.50 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 C -0.15 -1.80 8.82 37.16 0.33 -1.47 16 25 C 0.12 1.48 5.69 -3.91 -0.02 1.46 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.91 5.95 -51.93 -0.31 0.61 16 33 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 37 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 41 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 0.91 6.29 -51.93 -0.33 0.58 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -31.02 359.27 -8.43 -39.45 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.54 Total: 5.68 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.24 Total: -5.87 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.11 Total: -53.43 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.02 -8.43 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183736616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.090 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds