Wall clock time and date at job start Tue Mar 31 2020 06:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.46926 * 120.62694 * 359.97438 * 7 5 4 9 9 C 1.53197 * 108.77484 * 126.37299 * 8 7 5 10 10 C 1.53038 * 109.30963 * 54.63204 * 9 8 7 11 11 H 1.09003 * 109.45956 * 58.64809 * 10 9 8 12 12 C 1.53008 * 109.45625 * 178.61668 * 10 9 8 13 13 N 1.46500 * 109.46934 * 295.00008 * 12 10 9 14 14 C 1.36934 * 119.99958 * 180.02562 * 13 12 10 15 15 H 1.08006 * 120.00007 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00354 * 179.97438 * 14 13 12 17 17 N 1.31612 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00135 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47207 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47018 * 120.00550 * 18 16 14 21 21 H 1.48505 * 109.47273 * 240.00210 * 18 16 14 22 22 C 1.53037 * 109.53983 * 298.63302 * 10 9 8 23 23 H 1.08993 * 109.50088 * 301.41801 * 22 10 9 24 24 C 1.53002 * 109.49688 * 181.31473 * 22 10 9 25 25 C 1.46922 * 120.63244 * 179.72194 * 7 5 4 26 26 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 27 27 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 28 28 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 30 30 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 34 34 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 35 35 H 1.09001 * 109.59151 * 246.15628 * 8 7 5 36 36 H 1.09003 * 109.59195 * 6.58462 * 8 7 5 37 37 H 1.09000 * 109.49544 * 174.58699 * 9 8 7 38 38 H 1.08997 * 109.49415 * 294.65077 * 9 8 7 39 39 H 1.09001 * 109.47272 * 55.00017 * 12 10 9 40 40 H 1.09006 * 109.46678 * 175.00445 * 12 10 9 41 41 H 0.96995 * 120.00182 * 359.97438 * 13 12 10 42 42 H 0.97004 * 120.00285 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.46705 * 60.00601 * 24 22 10 44 44 H 1.08999 * 109.47239 * 179.97438 * 24 22 10 45 45 H 1.08999 * 109.47338 * 300.00905 * 24 22 10 46 46 H 1.09003 * 109.58475 * 353.41435 * 25 7 5 47 47 H 1.08996 * 109.58975 * 113.84341 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 8 4.1449 -0.3748 0.2400 7 7 4.2148 -1.4320 2.1892 8 6 3.4981 -1.9879 3.3451 9 6 3.9088 -3.4532 3.5217 10 6 5.4331 -3.5428 3.6247 11 1 5.7759 -2.9430 4.4678 12 6 5.8448 -5.0012 3.8357 13 7 5.3407 -5.4686 5.1294 14 6 5.5883 -6.7521 5.5375 15 1 6.1556 -7.4196 4.9058 16 6 5.1110 -7.1949 6.7635 17 7 4.4201 -6.3812 7.5334 18 14 5.4482 -8.9459 7.3199 19 1 6.2399 -9.6518 6.2804 20 1 6.2127 -8.9223 8.5927 21 1 4.1606 -9.6555 7.5290 22 6 6.0651 -3.0162 2.3342 23 1 5.7034 -3.5997 1.4876 24 6 7.5876 -3.1366 2.4252 25 6 5.6785 -1.5505 2.1417 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.7515 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2953 35 1 3.7582 -1.4251 4.2416 36 1 2.4236 -1.9279 3.1723 37 1 3.4586 -3.8500 4.4316 38 1 3.5669 -4.0327 2.6641 39 1 5.4261 -5.6159 3.0389 40 1 6.9321 -5.0775 3.8204 41 1 4.8321 -4.8688 5.6971 42 1 4.0863 -6.6907 8.3900 43 1 7.8618 -4.1825 2.5633 44 1 8.0373 -2.7619 1.5057 45 1 7.9484 -2.5517 3.2712 46 1 6.0421 -1.2019 1.1751 47 1 6.1197 -0.9513 2.9382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183736616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:46 Heat of formation + Delta-G solvation = -71.213813 kcal Electronic energy + Delta-G solvation = -23103.749886 eV Core-core repulsion = 19898.827708 eV Total energy + Delta-G solvation = -3204.922178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43170 -39.41984 -36.73158 -36.30271 -35.00422 -33.44645 -31.98074 -29.77855 -28.33130 -27.92585 -27.06599 -25.45401 -23.76076 -22.76924 -21.63885 -20.85795 -19.79589 -19.13835 -18.01228 -17.13965 -16.70838 -16.60948 -15.90432 -15.63248 -15.42074 -15.28653 -14.95715 -14.70485 -14.52523 -14.21098 -14.02006 -13.87647 -13.22564 -13.10253 -13.01431 -12.93981 -12.91584 -12.82766 -12.74378 -12.66170 -12.13667 -12.03474 -11.92636 -11.89224 -11.71874 -11.62093 -11.57443 -11.39155 -11.16975 -10.90356 -10.60389 -9.59994 -8.95528 -7.94115 -5.21477 1.47969 1.48271 1.58167 1.65579 2.04560 2.56739 3.39526 3.53382 3.70318 3.76644 3.88380 3.89554 4.03210 4.04940 4.24764 4.29164 4.38358 4.45400 4.54747 4.63401 4.67357 4.67804 4.71882 4.75871 4.77863 4.82049 4.86870 4.88304 5.00984 5.06523 5.10143 5.13002 5.14432 5.21009 5.29304 5.33463 5.36289 5.46731 5.49802 5.53163 5.56218 5.63663 6.29150 6.45370 7.20871 7.35893 8.12190 8.36690 9.29396 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024790 B = 0.003440 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.198297 B = 8136.474971 C = 8940.977369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.150 4.150 4 C -0.135 4.135 5 C 0.509 3.491 6 O -0.579 6.579 7 N -0.611 5.611 8 C 0.112 3.888 9 C -0.121 4.121 10 C -0.079 4.079 11 H 0.068 0.932 12 C 0.156 3.844 13 N -0.741 5.741 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.072 4.072 17 N -0.966 5.966 18 Si 0.969 3.031 19 H -0.269 1.269 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.087 4.087 23 H 0.063 0.937 24 C -0.144 4.144 25 C 0.120 3.880 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.010 0.990 40 H 0.025 0.975 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 14.412 -12.782 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.207 4.207 4 C -0.174 4.174 5 C 0.300 3.700 6 O -0.460 6.460 7 N -0.343 5.343 8 C -0.010 4.010 9 C -0.160 4.160 10 C -0.098 4.098 11 H 0.086 0.914 12 C 0.030 3.970 13 N -0.384 5.384 14 C -0.376 4.376 15 H 0.088 0.912 16 C -0.265 4.265 17 N -0.617 5.617 18 Si 0.799 3.201 19 H -0.194 1.194 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.107 4.107 23 H 0.082 0.918 24 C -0.202 4.202 25 C -0.002 4.002 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.042 0.958 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.678 14.484 -13.307 20.217 hybrid contribution 0.189 -1.078 0.809 1.361 sum -4.489 13.406 -12.498 18.870 Atomic orbital electron populations 1.21822 0.93178 1.02412 1.02621 1.20853 0.96419 0.96243 0.96460 1.21908 1.01368 0.95669 1.01745 1.21887 0.89745 1.04125 1.01640 1.21293 0.91453 0.76382 0.80882 1.90621 1.71345 1.49642 1.34351 1.48289 1.07508 1.56997 1.21536 1.21895 0.98024 0.93002 0.88118 1.21832 0.95556 0.96431 1.02131 1.21218 0.95620 0.95364 0.97570 0.91405 1.20886 0.96175 0.93170 0.86751 1.42550 1.65439 1.11587 1.18852 1.19626 1.27158 0.90145 1.00635 0.91161 1.25483 1.01482 1.01858 0.97662 1.69794 1.42964 1.36484 1.12434 0.85135 0.77023 0.80215 0.77758 1.19403 1.22035 1.21963 1.21271 0.96716 0.95729 0.96951 0.91847 1.21802 0.93680 1.02303 1.02396 1.21523 0.79958 0.95827 1.02918 0.91573 0.92117 0.92062 0.92504 0.92542 0.92242 0.93353 0.86863 0.87424 0.90208 0.87219 0.91444 0.92335 0.97234 0.95755 0.79131 0.93989 0.92549 0.91353 0.92077 0.89986 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.08 -1.41 2.57 -10.79 -0.03 -1.44 16 3 C -0.15 -2.78 8.93 71.98 0.64 -2.14 16 4 C -0.13 -2.27 3.52 29.85 0.11 -2.17 16 5 C 0.51 12.33 7.41 87.66 0.65 12.98 16 6 O -0.58 -17.90 13.38 -3.02 -0.04 -17.94 16 7 N -0.61 -14.15 2.98 -819.66 -2.44 -16.59 16 8 C 0.11 2.32 6.34 86.36 0.55 2.87 16 9 C -0.12 -3.37 5.25 30.67 0.16 -3.21 16 10 C -0.08 -2.38 1.73 -10.77 -0.02 -2.40 16 11 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 12 C 0.16 6.12 5.41 86.38 0.47 6.59 16 13 N -0.74 -36.75 5.32 -343.42 -1.83 -38.58 16 14 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 15 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 16 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 17 N -0.97 -57.82 13.06 21.65 0.28 -57.53 16 18 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 C -0.09 -2.22 2.40 -10.85 -0.03 -2.25 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 C -0.14 -3.39 8.82 71.98 0.63 -2.75 16 25 C 0.12 2.88 5.69 86.23 0.49 3.37 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.21 7.95 -2.39 -0.02 1.20 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.17 5.95 -2.39 -0.01 1.15 16 33 H 0.11 1.47 7.94 -2.39 -0.02 1.45 16 34 H 0.11 1.55 7.69 -2.39 -0.02 1.53 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.72 5.93 -2.39 -0.01 1.70 16 37 H 0.07 2.20 7.15 -2.39 -0.02 2.18 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.02 0.97 6.14 -2.38 -0.01 0.95 16 41 H 0.38 19.47 6.85 -92.71 -0.63 18.84 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.06 1.46 6.29 -2.38 -0.02 1.44 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 2.12 7.01 -2.39 -0.02 2.10 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.46 359.27 3.89 -62.57 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.29 Total: 28.29 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.60 Total: -8.00 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -3.98 Total: -112.70 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.04 Total: -17.94 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -66.46 3.89 -62.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183736616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.639 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds