Wall clock time and date at job start Tue Mar 31 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46921 * 120.63059 * 359.72315 * 7 5 4 9 9 C 1.52760 * 109.00903 * 233.58159 * 8 7 5 10 10 C 1.53040 * 109.38219 * 305.58856 * 9 8 7 11 11 H 1.09001 * 109.46468 * 301.22386 * 10 9 8 12 12 C 1.52996 * 109.46272 * 181.25898 * 10 9 8 13 13 N 1.46507 * 109.47000 * 64.93359 * 12 10 9 14 14 C 1.36937 * 119.99758 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00189 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99448 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00403 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99800 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47219 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47109 * 120.00157 * 18 16 14 21 21 H 1.48491 * 109.47379 * 240.00049 * 18 16 14 22 22 C 1.53042 * 109.53627 * 61.23932 * 10 9 8 23 23 H 1.09000 * 109.52420 * 58.60476 * 22 10 9 24 24 C 1.53007 * 109.49782 * 178.68112 * 22 10 9 25 25 C 1.46926 * 120.62707 * 180.02562 * 7 5 4 26 26 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 28 28 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 29 29 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 30 30 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 32 32 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 33 33 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 34 34 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 35 35 H 1.08996 * 109.58649 * 353.41979 * 8 7 5 36 36 H 1.09004 * 109.58204 * 113.84425 * 8 7 5 37 37 H 1.09000 * 109.56394 * 185.56047 * 9 8 7 38 38 H 1.08995 * 109.36180 * 65.49907 * 9 8 7 39 39 H 1.09002 * 109.47724 * 184.93331 * 12 10 9 40 40 H 1.09004 * 109.47017 * 304.93864 * 12 10 9 41 41 H 0.97000 * 119.99435 * 359.97438 * 13 12 10 42 42 H 0.96996 * 120.00289 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.46987 * 179.83742 * 24 22 10 44 44 H 1.09003 * 109.46990 * 299.84259 * 24 22 10 45 45 H 1.09003 * 109.46737 * 59.83929 * 24 22 10 46 46 H 1.09005 * 109.58410 * 246.15856 * 25 7 5 47 47 H 1.08998 * 109.58968 * 6.58185 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1734 1.1887 6 8 1.0117 -2.5903 0.2397 7 7 1.9854 -3.0088 2.1888 8 6 2.7542 -2.5200 3.3415 9 6 3.9936 -3.3951 3.5201 10 6 3.5692 -4.8618 3.6235 11 1 2.8899 -4.9847 4.4671 12 6 4.8064 -5.7369 3.8339 13 7 5.4171 -5.4165 5.1266 14 6 6.5452 -6.0775 5.5334 15 1 6.9845 -6.8353 4.9017 16 6 7.1240 -5.7735 6.7579 17 7 6.5889 -4.8496 7.5276 18 14 8.6625 -6.6757 7.3134 19 1 9.0621 -7.6588 6.2746 20 1 9.7621 -5.6990 7.5190 21 1 8.3868 -7.3861 8.5879 22 6 2.8610 -5.2818 2.3335 23 1 3.5310 -5.1363 1.4861 24 6 2.4662 -6.7573 2.4248 25 6 1.6044 -4.4271 2.1439 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6055 -0.2619 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 3.0591 -1.4884 3.1663 36 1 2.1396 -2.5741 4.2401 37 1 4.5184 -3.1033 4.4298 38 1 4.6532 -3.2669 2.6619 39 1 4.5153 -6.7872 3.8201 40 1 5.5247 -5.5483 3.0361 41 1 5.0226 -4.7355 5.6937 42 1 6.9937 -4.6369 8.3831 43 1 1.9593 -7.0552 1.5070 44 1 3.3609 -7.3651 2.5596 45 1 1.7971 -6.9025 3.2730 46 1 0.8939 -4.6401 2.9426 47 1 1.1510 -4.6533 1.1788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183736617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:49 Heat of formation + Delta-G solvation = -53.570907 kcal Electronic energy + Delta-G solvation = -23103.312207 eV Core-core repulsion = 19899.155083 eV Total energy + Delta-G solvation = -3204.157124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40661 -38.27764 -35.71882 -34.95117 -33.58892 -31.97976 -30.32866 -28.89590 -27.24901 -26.89482 -25.99977 -23.70582 -22.49021 -21.45005 -20.69432 -19.73595 -18.81470 -17.27384 -16.88895 -16.16559 -15.64481 -15.00499 -14.74063 -14.37169 -14.04806 -14.01033 -13.84390 -13.54188 -13.37770 -13.03573 -12.59911 -12.51427 -12.39773 -12.30204 -12.04205 -11.91562 -11.77818 -11.63847 -11.19797 -11.02288 -10.98171 -10.88053 -10.83708 -10.81756 -10.37658 -10.24847 -10.16812 -9.94880 -9.63798 -9.59971 -8.87291 -8.55017 -6.91182 -5.78036 -3.05742 2.63006 3.00463 3.42134 3.48240 3.50116 4.43659 4.57821 4.59192 4.74572 4.83261 4.94742 4.98757 5.10771 5.14973 5.31798 5.33199 5.40748 5.45688 5.50767 5.52968 5.53872 5.57654 5.70929 5.72684 5.80565 5.83093 5.88248 5.92102 5.95988 6.00422 6.08659 6.19446 6.24302 6.29502 6.29742 6.34193 6.47768 6.52732 6.65196 6.83734 6.93632 7.42979 7.69968 8.18855 8.41499 9.52738 10.11156 10.45816 11.45061 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.003441 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.862397 B = 8134.357759 C = 8940.024607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.547 6.547 7 N -0.610 5.610 8 C 0.105 3.895 9 C -0.127 4.127 10 C -0.089 4.089 11 H 0.072 0.928 12 C 0.156 3.844 13 N -0.732 5.732 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.097 4.097 23 H 0.072 0.928 24 C -0.147 4.147 25 C 0.117 3.883 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 8.788 -12.490 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.425 6.425 7 N -0.343 5.343 8 C -0.018 4.018 9 C -0.165 4.165 10 C -0.107 4.107 11 H 0.090 0.910 12 C 0.029 3.971 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.117 4.117 23 H 0.090 0.910 24 C -0.204 4.204 25 C -0.005 4.005 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.900 8.456 -12.986 19.539 hybrid contribution 0.919 -0.252 0.786 1.235 sum -10.982 8.204 -12.200 18.351 Atomic orbital electron populations 1.21954 0.94842 1.03331 1.00839 1.20865 0.96557 0.95277 0.97269 1.21867 1.00979 0.95835 1.01873 1.21815 1.02912 0.92296 1.00733 1.20699 0.78988 0.88366 0.81589 1.90629 1.40740 1.78004 1.33117 1.48210 1.54881 1.09718 1.21459 1.21793 0.93330 0.98489 0.88144 1.21862 0.96224 0.94871 1.03514 1.21331 0.97994 0.94829 0.96588 0.91007 1.20759 0.91392 0.95736 0.89235 1.42389 1.31072 1.46675 1.17495 1.19277 1.01865 1.14913 1.00711 0.91243 1.24720 0.99561 0.99473 0.97314 1.69657 1.41779 1.34604 1.12292 0.86134 0.83006 0.78872 0.78303 1.20602 1.21907 1.21898 1.21449 0.96431 0.95084 0.98715 0.91002 1.21832 1.02095 0.95238 1.01284 1.21666 0.96566 0.79365 1.02916 0.90716 0.93463 0.93103 0.90527 0.92617 0.92497 0.92646 0.88986 0.88838 0.89921 0.91175 0.89241 0.91836 0.95805 0.96604 0.78330 0.93614 0.93033 0.91344 0.92530 0.91697 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.93 37.16 0.33 -1.18 16 2 C -0.08 -0.77 2.57 -90.62 -0.23 -1.01 16 3 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 4 C -0.14 -1.33 3.52 -27.88 -0.10 -1.43 16 5 C 0.51 6.59 7.41 -10.98 -0.08 6.51 16 6 O -0.55 -8.55 13.38 5.56 0.07 -8.47 16 7 N -0.61 -7.56 2.98 -173.06 -0.52 -8.08 16 8 C 0.11 1.20 6.31 -3.94 -0.02 1.18 16 9 C -0.13 -1.81 5.23 -26.83 -0.14 -1.95 16 10 C -0.09 -1.36 1.73 -90.58 -0.16 -1.52 16 11 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 12 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 13 N -0.73 -18.00 5.32 -59.90 -0.32 -18.32 16 14 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 18 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C -0.10 -1.28 2.41 -90.52 -0.22 -1.50 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 C -0.15 -1.80 8.82 37.16 0.33 -1.47 16 25 C 0.12 1.48 5.72 -3.73 -0.02 1.46 16 26 H 0.07 0.91 5.95 -51.93 -0.31 0.61 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.09 0.81 7.68 -51.93 -0.40 0.41 16 35 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 9.77 6.84 -40.82 -0.28 9.49 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -31.01 359.27 -8.43 -39.45 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.54 Total: 5.68 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.24 Total: -5.88 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.11 Total: -53.43 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.01 -8.43 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183736617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.126 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds