Wall clock time and date at job start Tue Mar 31 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46921 * 120.63059 * 359.72315 * 7 5 4 9 9 C 1.52760 * 109.00903 * 233.58159 * 8 7 5 10 10 C 1.53040 * 109.38219 * 305.58856 * 9 8 7 11 11 H 1.09001 * 109.46468 * 301.22386 * 10 9 8 12 12 C 1.52996 * 109.46272 * 181.25898 * 10 9 8 13 13 N 1.46507 * 109.47000 * 64.93359 * 12 10 9 14 14 C 1.36937 * 119.99758 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00189 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99448 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00403 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99800 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47219 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47109 * 120.00157 * 18 16 14 21 21 H 1.48491 * 109.47379 * 240.00049 * 18 16 14 22 22 C 1.53042 * 109.53627 * 61.23932 * 10 9 8 23 23 H 1.09000 * 109.52420 * 58.60476 * 22 10 9 24 24 C 1.53007 * 109.49782 * 178.68112 * 22 10 9 25 25 C 1.46926 * 120.62707 * 180.02562 * 7 5 4 26 26 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 28 28 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 29 29 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 30 30 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 32 32 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 33 33 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 34 34 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 35 35 H 1.08996 * 109.58649 * 353.41979 * 8 7 5 36 36 H 1.09004 * 109.58204 * 113.84425 * 8 7 5 37 37 H 1.09000 * 109.56394 * 185.56047 * 9 8 7 38 38 H 1.08995 * 109.36180 * 65.49907 * 9 8 7 39 39 H 1.09002 * 109.47724 * 184.93331 * 12 10 9 40 40 H 1.09004 * 109.47017 * 304.93864 * 12 10 9 41 41 H 0.97000 * 119.99435 * 359.97438 * 13 12 10 42 42 H 0.96996 * 120.00289 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.46987 * 179.83742 * 24 22 10 44 44 H 1.09003 * 109.46990 * 299.84259 * 24 22 10 45 45 H 1.09003 * 109.46737 * 59.83929 * 24 22 10 46 46 H 1.09005 * 109.58410 * 246.15856 * 25 7 5 47 47 H 1.08998 * 109.58968 * 6.58185 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1734 1.1887 6 8 1.0117 -2.5903 0.2397 7 7 1.9854 -3.0088 2.1888 8 6 2.7542 -2.5200 3.3415 9 6 3.9936 -3.3951 3.5201 10 6 3.5692 -4.8618 3.6235 11 1 2.8899 -4.9847 4.4671 12 6 4.8064 -5.7369 3.8339 13 7 5.4171 -5.4165 5.1266 14 6 6.5452 -6.0775 5.5334 15 1 6.9845 -6.8353 4.9017 16 6 7.1240 -5.7735 6.7579 17 7 6.5889 -4.8496 7.5276 18 14 8.6625 -6.6757 7.3134 19 1 9.0621 -7.6588 6.2746 20 1 9.7621 -5.6990 7.5190 21 1 8.3868 -7.3861 8.5879 22 6 2.8610 -5.2818 2.3335 23 1 3.5310 -5.1363 1.4861 24 6 2.4662 -6.7573 2.4248 25 6 1.6044 -4.4271 2.1439 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6055 -0.2619 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 3.0591 -1.4884 3.1663 36 1 2.1396 -2.5741 4.2401 37 1 4.5184 -3.1033 4.4298 38 1 4.6532 -3.2669 2.6619 39 1 4.5153 -6.7872 3.8201 40 1 5.5247 -5.5483 3.0361 41 1 5.0226 -4.7355 5.6937 42 1 6.9937 -4.6369 8.3831 43 1 1.9593 -7.0552 1.5070 44 1 3.3609 -7.3651 2.5596 45 1 1.7971 -6.9025 3.2730 46 1 0.8939 -4.6401 2.9426 47 1 1.1510 -4.6533 1.1788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183736617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:49 Heat of formation + Delta-G solvation = -71.244813 kcal Electronic energy + Delta-G solvation = -23104.078605 eV Core-core repulsion = 19899.155083 eV Total energy + Delta-G solvation = -3204.923522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43136 -39.41883 -36.73097 -36.30368 -35.00049 -33.44567 -31.99422 -29.77915 -28.33967 -27.92572 -27.05790 -25.45416 -23.75442 -22.77147 -21.63642 -20.85942 -19.79357 -19.13843 -18.01239 -17.13913 -16.70968 -16.60796 -15.90315 -15.63270 -15.42707 -15.28658 -14.95278 -14.70451 -14.53043 -14.20955 -14.02043 -13.88251 -13.22425 -13.10064 -13.01539 -12.94098 -12.91636 -12.82871 -12.74268 -12.66243 -12.13703 -12.03469 -11.92363 -11.89278 -11.71863 -11.62029 -11.57328 -11.38941 -11.17131 -10.90322 -10.60407 -9.59998 -8.95507 -7.94093 -5.21489 1.48003 1.48275 1.58172 1.65549 2.04576 2.56732 3.39510 3.53365 3.70320 3.76255 3.88365 3.89523 4.03628 4.05019 4.24722 4.29167 4.38540 4.45447 4.54431 4.63446 4.67403 4.67894 4.71877 4.75864 4.77744 4.82096 4.86848 4.88718 5.01025 5.06526 5.10117 5.12985 5.14409 5.21008 5.29249 5.33408 5.36203 5.46709 5.49823 5.53139 5.56221 5.63700 6.29169 6.45341 7.20857 7.35911 8.12151 8.36689 9.29406 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.003441 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.862397 B = 8134.357759 C = 8940.024607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.135 4.135 5 C 0.509 3.491 6 O -0.579 6.579 7 N -0.611 5.611 8 C 0.112 3.888 9 C -0.121 4.121 10 C -0.079 4.079 11 H 0.068 0.932 12 C 0.156 3.844 13 N -0.741 5.741 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.072 4.072 17 N -0.966 5.966 18 Si 0.969 3.031 19 H -0.270 1.270 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.087 4.087 23 H 0.063 0.937 24 C -0.144 4.144 25 C 0.120 3.880 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.010 0.990 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.914 9.575 -12.765 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.200 4.200 4 C -0.174 4.174 5 C 0.300 3.700 6 O -0.460 6.460 7 N -0.343 5.343 8 C -0.010 4.010 9 C -0.160 4.160 10 C -0.098 4.098 11 H 0.086 0.914 12 C 0.030 3.970 13 N -0.384 5.384 14 C -0.376 4.376 15 H 0.088 0.912 16 C -0.265 4.265 17 N -0.617 5.617 18 Si 0.799 3.201 19 H -0.194 1.194 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.107 4.107 23 H 0.082 0.918 24 C -0.202 4.202 25 C -0.002 4.002 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.028 0.972 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.113 9.230 -13.289 20.212 hybrid contribution 0.958 -0.535 0.806 1.361 sum -11.156 8.696 -12.484 18.866 Atomic orbital electron populations 1.21908 0.95231 1.01807 1.01743 1.20854 0.96232 0.96430 0.96461 1.21822 1.01303 0.94287 1.02620 1.21886 1.03869 0.90002 1.01640 1.21292 0.78268 0.89573 0.80872 1.90622 1.42221 1.78800 1.34313 1.48291 1.54725 1.09621 1.21694 1.21800 0.91914 0.99094 0.88213 1.21757 0.97442 0.94631 1.02143 1.21217 0.96065 0.94909 0.97581 0.91399 1.20884 0.92687 0.96643 0.86766 1.42554 1.30645 1.46242 1.18990 1.19625 1.02568 1.14645 1.00719 0.91159 1.25484 1.02637 1.00683 0.97678 1.69794 1.43213 1.36145 1.12531 0.85134 0.79451 0.77790 0.77758 1.19407 1.21972 1.22026 1.21336 0.96420 0.95957 0.96942 0.91834 1.21804 1.01758 0.94236 1.02396 1.21600 0.96102 0.79616 1.02920 0.93352 0.92244 0.92541 0.92507 0.92063 0.92121 0.91567 0.86863 0.87426 0.87234 0.90241 0.91400 0.92362 0.95752 0.97245 0.79127 0.93987 0.91356 0.92556 0.92085 0.90689 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.93 71.98 0.64 -2.14 16 2 C -0.08 -1.41 2.57 -10.79 -0.03 -1.44 16 3 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 4 C -0.13 -2.28 3.52 29.85 0.11 -2.17 16 5 C 0.51 12.33 7.41 87.66 0.65 12.98 16 6 O -0.58 -17.90 13.38 -3.03 -0.04 -17.94 16 7 N -0.61 -14.15 2.98 -819.83 -2.44 -16.59 16 8 C 0.11 2.33 6.31 86.22 0.54 2.87 16 9 C -0.12 -3.37 5.23 30.53 0.16 -3.21 16 10 C -0.08 -2.38 1.73 -10.77 -0.02 -2.40 16 11 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 12 C 0.16 6.12 5.41 86.38 0.47 6.59 16 13 N -0.74 -36.75 5.32 -343.44 -1.83 -38.57 16 14 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 15 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 16 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 17 N -0.97 -57.81 13.06 21.65 0.28 -57.53 16 18 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 C -0.09 -2.22 2.41 -10.73 -0.03 -2.24 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 24 C -0.14 -3.39 8.82 71.98 0.63 -2.75 16 25 C 0.12 2.88 5.72 86.35 0.49 3.37 16 26 H 0.05 1.17 5.95 -2.39 -0.01 1.15 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.21 7.95 -2.39 -0.02 1.20 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 1.47 7.95 -2.39 -0.02 1.45 16 34 H 0.11 1.55 7.68 -2.39 -0.02 1.53 16 35 H 0.11 1.72 5.93 -2.39 -0.01 1.70 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 2.21 7.15 -2.39 -0.02 2.19 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.02 0.97 6.14 -2.39 -0.01 0.95 16 40 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.38 19.47 6.84 -92.71 -0.63 18.83 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 1.45 6.30 -2.39 -0.02 1.44 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.08 2.12 7.00 -2.39 -0.02 2.10 16 Total: -1.00 -66.45 359.27 3.89 -62.56 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.29 Total: 28.30 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.59 Total: -8.01 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -3.99 Total: -112.70 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.04 Total: -17.94 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -66.45 3.89 -62.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183736617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.682 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds