Wall clock time and date at job start Tue Mar 31 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 C 1.53008 * 109.46755 * 119.99782 * 2 1 3 5 5 C 1.50697 * 109.47262 * 65.00243 * 4 2 1 6 6 O 1.21279 * 119.99705 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00034 * 180.02562 * 5 4 2 8 8 C 1.46925 * 120.62995 * 359.97438 * 7 5 4 9 9 C 1.53192 * 108.77313 * 126.41651 * 8 7 5 10 10 C 1.53039 * 109.31131 * 54.63670 * 9 8 7 11 11 H 1.09001 * 109.46007 * 58.64375 * 10 9 8 12 12 C 1.53004 * 109.45895 * 178.61251 * 10 9 8 13 13 N 1.46499 * 109.47198 * 295.00122 * 12 10 9 14 14 C 1.36939 * 119.99933 * 180.27608 * 13 12 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 12 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 12 17 17 N 1.31624 * 119.99740 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47080 * 120.00466 * 18 16 14 21 21 H 1.48506 * 109.47018 * 240.00565 * 18 16 14 22 22 C 1.53039 * 109.53946 * 298.63276 * 10 9 8 23 23 H 1.08998 * 109.50050 * 181.31330 * 22 10 9 24 24 C 1.53001 * 109.49821 * 301.41435 * 22 10 9 25 25 C 1.46924 * 120.63037 * 180.02562 * 7 5 4 26 26 H 1.09001 * 109.47502 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47656 * 300.00219 * 1 2 3 28 28 H 1.09002 * 109.47127 * 60.00299 * 1 2 3 29 29 H 1.08998 * 109.47275 * 239.99139 * 2 1 3 30 30 H 1.09005 * 109.47038 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46963 * 299.99092 * 3 2 1 32 32 H 1.08992 * 109.47491 * 59.99748 * 3 2 1 33 33 H 1.09003 * 109.46863 * 304.99697 * 4 2 1 34 34 H 1.09005 * 109.46716 * 185.00128 * 4 2 1 35 35 H 1.09005 * 109.58760 * 6.63340 * 8 7 5 36 36 H 1.08996 * 109.58662 * 246.20491 * 8 7 5 37 37 H 1.08998 * 109.50072 * 294.68866 * 9 8 7 38 38 H 1.09000 * 109.49780 * 174.59014 * 9 8 7 39 39 H 1.09009 * 109.46730 * 174.99909 * 12 10 9 40 40 H 1.08998 * 109.46846 * 55.00454 * 12 10 9 41 41 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 42 42 H 0.96998 * 119.99409 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.46979 * 59.99929 * 24 22 10 44 44 H 1.08999 * 109.46796 * 179.97438 * 24 22 10 45 45 H 1.09000 * 109.47008 * 299.99979 * 24 22 10 46 46 H 1.09000 * 109.58473 * 353.37015 * 25 7 5 47 47 H 1.08996 * 109.58863 * 113.65444 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 1.6413 -2.1733 1.1890 6 8 1.0110 -2.5901 0.2405 7 7 1.9843 -3.0084 2.1897 8 6 2.7473 -2.5181 3.3456 9 6 1.9959 -2.8924 4.6270 10 6 1.7363 -4.4005 4.6393 11 1 2.6856 -4.9329 4.5806 12 6 1.0164 -4.7833 5.9340 13 7 1.8991 -4.5325 7.0760 14 6 1.4692 -4.8071 8.3469 15 1 0.4778 -5.2043 8.5075 16 6 2.3077 -4.5750 9.4285 17 7 3.5157 -4.0905 9.2326 18 14 1.7210 -4.9489 11.1621 19 1 0.3354 -5.4806 11.1119 20 1 2.6164 -5.9593 11.7805 21 1 1.7450 -3.7043 11.9720 22 6 0.8644 -4.7795 3.4400 23 1 0.6605 -5.8500 3.4622 24 6 -0.4544 -4.0064 3.5026 25 6 1.6034 -4.4267 2.1448 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6443 1.2953 35 1 2.8476 -1.4344 3.2842 36 1 3.7351 -2.9787 3.3534 37 1 1.0457 -2.3594 4.6605 38 1 2.5973 -2.6196 5.4942 39 1 0.7524 -5.8405 5.9040 40 1 0.1108 -4.1854 6.0365 41 1 2.7896 -4.1761 6.9316 42 1 4.1014 -3.9280 9.9885 43 1 -0.2495 -2.9361 3.4788 44 1 -1.0747 -4.2764 2.6480 45 1 -0.9781 -4.2556 4.4255 46 1 0.9490 -4.6024 1.2911 47 1 2.4979 -5.0426 2.0524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183736618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:52 Heat of formation + Delta-G solvation = -50.558760 kcal Electronic energy + Delta-G solvation = -23361.383644 eV Core-core repulsion = 20157.357136 eV Total energy + Delta-G solvation = -3204.026507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49647 -38.34211 -35.70503 -34.91097 -33.40082 -31.77479 -30.31818 -28.78914 -27.23595 -27.02253 -26.08214 -23.65374 -22.97164 -21.61540 -20.71082 -19.44438 -18.27815 -17.34891 -16.83289 -16.07984 -15.60366 -14.98024 -14.89825 -14.53431 -13.99980 -13.98936 -13.91468 -13.60223 -13.38371 -12.94268 -12.64347 -12.48412 -12.40368 -12.31740 -12.16691 -12.01720 -11.55203 -11.43344 -11.15672 -11.05824 -10.99153 -10.92176 -10.81822 -10.77291 -10.32810 -10.20267 -10.14368 -9.94648 -9.64275 -9.58718 -8.87302 -8.52709 -6.91343 -5.77992 -3.05714 2.64719 3.02364 3.42211 3.48305 3.50191 4.44239 4.57943 4.60302 4.74568 4.84372 4.94244 5.02969 5.12780 5.17420 5.26797 5.33326 5.40591 5.45776 5.51340 5.54587 5.54741 5.63940 5.74222 5.74615 5.80924 5.82713 5.87659 5.90354 5.98188 6.06681 6.09838 6.20107 6.23189 6.30340 6.32545 6.38873 6.47399 6.53410 6.68310 6.82264 6.94649 7.44674 7.70044 8.20679 8.41637 9.52833 10.11281 10.45882 11.45107 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026739 B = 0.003472 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.898199 B = 8063.391390 C = 8527.389840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.546 6.546 7 N -0.607 5.607 8 C 0.105 3.895 9 C -0.128 4.128 10 C -0.088 4.088 11 H 0.071 0.929 12 C 0.158 3.842 13 N -0.732 5.732 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.098 4.098 23 H 0.080 0.920 24 C -0.143 4.143 25 C 0.116 3.884 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 7.128 -17.884 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.425 6.425 7 N -0.340 5.340 8 C -0.018 4.018 9 C -0.166 4.166 10 C -0.107 4.107 11 H 0.089 0.911 12 C 0.031 3.969 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.118 4.118 23 H 0.098 0.902 24 C -0.201 4.201 25 C -0.006 4.006 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.769 6.856 -18.243 19.684 hybrid contribution 0.160 -0.116 1.217 1.233 sum -2.610 6.740 -17.026 18.496 Atomic orbital electron populations 1.21955 0.94771 1.03413 1.00886 1.20859 0.96640 0.95219 0.97172 1.21867 1.00844 0.95903 1.01942 1.21819 1.02727 0.92442 1.00812 1.20667 0.78926 0.88227 0.81805 1.90628 1.40499 1.77935 1.33394 1.48159 1.55150 1.09791 1.20876 1.21878 0.94935 0.99624 0.85347 1.21970 1.01247 0.96681 0.96675 1.21298 0.99010 0.95658 0.94748 0.91097 1.20717 0.93262 0.97006 0.85947 1.42393 1.15883 1.78036 1.01335 1.19278 0.98569 1.35240 0.83684 0.91249 1.24721 0.96299 1.02178 0.97875 1.69663 1.07667 1.51148 1.29851 0.86132 0.77707 0.77446 0.85020 1.20600 1.21910 1.21892 1.21470 0.95711 1.00433 0.94171 0.90166 1.21844 0.96309 1.00453 1.01455 1.21656 0.99430 0.80732 0.98776 0.90659 0.93380 0.93136 0.90611 0.92718 0.92503 0.92588 0.88863 0.89061 0.89973 0.91190 0.91392 0.89443 0.96534 0.96091 0.78321 0.93620 0.92657 0.93396 0.92013 0.89286 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.93 37.16 0.33 -1.24 16 2 C -0.08 -0.76 2.57 -90.62 -0.23 -0.99 16 3 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 4 C -0.14 -1.32 3.52 -27.88 -0.10 -1.42 16 5 C 0.51 6.46 7.42 -10.99 -0.08 6.38 16 6 O -0.55 -8.40 13.38 5.56 0.07 -8.33 16 7 N -0.61 -7.33 2.41 -172.75 -0.42 -7.75 16 8 C 0.10 1.18 6.34 -3.71 -0.02 1.16 16 9 C -0.13 -1.80 4.91 -26.61 -0.13 -1.93 16 10 C -0.09 -1.34 1.96 -90.58 -0.18 -1.52 16 11 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 12 C 0.16 3.08 5.18 -4.04 -0.02 3.06 16 13 N -0.73 -18.01 5.32 -59.90 -0.32 -18.32 16 14 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 C -0.10 -1.28 2.72 -90.48 -0.25 -1.52 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 24 C -0.14 -1.89 8.38 37.16 0.31 -1.58 16 25 C 0.12 1.44 5.83 -3.69 -0.02 1.42 16 26 H 0.07 0.95 5.95 -51.93 -0.31 0.64 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.81 7.95 -51.93 -0.41 0.39 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 34 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 35 H 0.08 0.76 5.93 -51.93 -0.31 0.46 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 38 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 39 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 40 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 41 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 0.75 5.97 -51.93 -0.31 0.44 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 46 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -30.93 355.29 -8.28 -39.21 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.38 Total: 5.80 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.29 Total: -6.17 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.01 Total: -53.11 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.93 -8.28 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183736618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.344 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds