Wall clock time and date at job start Tue Mar 31 2020 06:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 C 1.53008 * 109.46755 * 119.99782 * 2 1 3 5 5 C 1.50697 * 109.47262 * 65.00243 * 4 2 1 6 6 O 1.21279 * 119.99705 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00034 * 180.02562 * 5 4 2 8 8 C 1.46925 * 120.62995 * 359.97438 * 7 5 4 9 9 C 1.53192 * 108.77313 * 126.41651 * 8 7 5 10 10 C 1.53039 * 109.31131 * 54.63670 * 9 8 7 11 11 H 1.09001 * 109.46007 * 58.64375 * 10 9 8 12 12 C 1.53004 * 109.45895 * 178.61251 * 10 9 8 13 13 N 1.46499 * 109.47198 * 295.00122 * 12 10 9 14 14 C 1.36939 * 119.99933 * 180.27608 * 13 12 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 12 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 12 17 17 N 1.31624 * 119.99740 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47080 * 120.00466 * 18 16 14 21 21 H 1.48506 * 109.47018 * 240.00565 * 18 16 14 22 22 C 1.53039 * 109.53946 * 298.63276 * 10 9 8 23 23 H 1.08998 * 109.50050 * 181.31330 * 22 10 9 24 24 C 1.53001 * 109.49821 * 301.41435 * 22 10 9 25 25 C 1.46924 * 120.63037 * 180.02562 * 7 5 4 26 26 H 1.09001 * 109.47502 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47656 * 300.00219 * 1 2 3 28 28 H 1.09002 * 109.47127 * 60.00299 * 1 2 3 29 29 H 1.08998 * 109.47275 * 239.99139 * 2 1 3 30 30 H 1.09005 * 109.47038 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46963 * 299.99092 * 3 2 1 32 32 H 1.08992 * 109.47491 * 59.99748 * 3 2 1 33 33 H 1.09003 * 109.46863 * 304.99697 * 4 2 1 34 34 H 1.09005 * 109.46716 * 185.00128 * 4 2 1 35 35 H 1.09005 * 109.58760 * 6.63340 * 8 7 5 36 36 H 1.08996 * 109.58662 * 246.20491 * 8 7 5 37 37 H 1.08998 * 109.50072 * 294.68866 * 9 8 7 38 38 H 1.09000 * 109.49780 * 174.59014 * 9 8 7 39 39 H 1.09009 * 109.46730 * 174.99909 * 12 10 9 40 40 H 1.08998 * 109.46846 * 55.00454 * 12 10 9 41 41 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 42 42 H 0.96998 * 119.99409 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.46979 * 59.99929 * 24 22 10 44 44 H 1.08999 * 109.46796 * 179.97438 * 24 22 10 45 45 H 1.09000 * 109.47008 * 299.99979 * 24 22 10 46 46 H 1.09000 * 109.58473 * 353.37015 * 25 7 5 47 47 H 1.08996 * 109.58863 * 113.65444 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 1.6413 -2.1733 1.1890 6 8 1.0110 -2.5901 0.2405 7 7 1.9843 -3.0084 2.1897 8 6 2.7473 -2.5181 3.3456 9 6 1.9959 -2.8924 4.6270 10 6 1.7363 -4.4005 4.6393 11 1 2.6856 -4.9329 4.5806 12 6 1.0164 -4.7833 5.9340 13 7 1.8991 -4.5325 7.0760 14 6 1.4692 -4.8071 8.3469 15 1 0.4778 -5.2043 8.5075 16 6 2.3077 -4.5750 9.4285 17 7 3.5157 -4.0905 9.2326 18 14 1.7210 -4.9489 11.1621 19 1 0.3354 -5.4806 11.1119 20 1 2.6164 -5.9593 11.7805 21 1 1.7450 -3.7043 11.9720 22 6 0.8644 -4.7795 3.4400 23 1 0.6605 -5.8500 3.4622 24 6 -0.4544 -4.0064 3.5026 25 6 1.6034 -4.4267 2.1448 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6443 1.2953 35 1 2.8476 -1.4344 3.2842 36 1 3.7351 -2.9787 3.3534 37 1 1.0457 -2.3594 4.6605 38 1 2.5973 -2.6196 5.4942 39 1 0.7524 -5.8405 5.9040 40 1 0.1108 -4.1854 6.0365 41 1 2.7896 -4.1761 6.9316 42 1 4.1014 -3.9280 9.9885 43 1 -0.2495 -2.9361 3.4788 44 1 -1.0747 -4.2764 2.6480 45 1 -0.9781 -4.2556 4.4255 46 1 0.9490 -4.6024 1.2911 47 1 2.4979 -5.0426 2.0524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183736618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:51 Heat of formation + Delta-G solvation = -67.839016 kcal Electronic energy + Delta-G solvation = -23362.132972 eV Core-core repulsion = 20157.357136 eV Total energy + Delta-G solvation = -3204.775836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51341 -39.45837 -36.71919 -36.28935 -34.82662 -33.22730 -31.92259 -29.66491 -28.47117 -27.92617 -27.19661 -25.41619 -24.12079 -23.00097 -21.67135 -20.38991 -19.57762 -18.91241 -18.06860 -17.00479 -16.81904 -16.49521 -15.88351 -15.76087 -15.49009 -15.33938 -15.02728 -14.70271 -14.46457 -14.37214 -13.95883 -13.67740 -13.49397 -13.24558 -13.02263 -12.97197 -12.83834 -12.74258 -12.64080 -12.47140 -12.14341 -12.02656 -11.98037 -11.90648 -11.70196 -11.55513 -11.52951 -11.29059 -11.21039 -10.89797 -10.57784 -9.55279 -8.95667 -7.94036 -5.21409 1.48048 1.48379 1.58260 1.69283 2.08106 2.56883 3.39675 3.55052 3.74083 3.78272 3.86375 3.91562 4.04471 4.10144 4.24673 4.31388 4.37413 4.44087 4.50299 4.66462 4.68965 4.71422 4.75479 4.76798 4.78744 4.84707 4.87721 4.89932 4.99872 5.06644 5.08968 5.13477 5.19132 5.21317 5.23742 5.30378 5.36992 5.47857 5.51222 5.53415 5.56631 5.67687 6.29351 6.48896 7.24658 7.36050 8.12548 8.36839 9.29468 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026739 B = 0.003472 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.898199 B = 8063.391390 C = 8527.389840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.135 4.135 5 C 0.510 3.490 6 O -0.578 6.578 7 N -0.607 5.607 8 C 0.112 3.888 9 C -0.122 4.122 10 C -0.078 4.078 11 H 0.066 0.934 12 C 0.159 3.841 13 N -0.742 5.742 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.072 4.072 17 N -0.966 5.966 18 Si 0.969 3.031 19 H -0.269 1.269 20 H -0.294 1.294 21 H -0.292 1.292 22 C -0.090 4.090 23 H 0.087 0.913 24 C -0.138 4.138 25 C 0.119 3.881 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.012 0.988 40 H 0.019 0.981 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 7.911 -18.319 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 C -0.200 4.200 4 C -0.175 4.175 5 C 0.301 3.699 6 O -0.459 6.459 7 N -0.339 5.339 8 C -0.011 4.011 9 C -0.160 4.160 10 C -0.097 4.097 11 H 0.085 0.915 12 C 0.032 3.968 13 N -0.385 5.385 14 C -0.376 4.376 15 H 0.088 0.912 16 C -0.265 4.265 17 N -0.617 5.617 18 Si 0.799 3.201 19 H -0.194 1.194 20 H -0.221 1.221 21 H -0.219 1.219 22 C -0.110 4.110 23 H 0.105 0.895 24 C -0.195 4.195 25 C -0.003 4.003 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.735 7.632 -18.694 20.376 hybrid contribution 0.078 -0.390 1.306 1.366 sum -2.657 7.241 -17.388 19.022 Atomic orbital electron populations 1.21918 0.95603 1.01782 1.01539 1.20844 0.95933 0.96450 0.96587 1.21822 1.01466 0.94296 1.02455 1.21888 1.04146 0.90152 1.01298 1.21225 0.78165 0.89332 0.81191 1.90622 1.41897 1.78684 1.34654 1.48217 1.55034 1.09640 1.21011 1.21880 0.94475 1.01344 0.83357 1.21855 1.01044 0.95613 0.97477 1.21177 0.98611 0.96561 0.93371 0.91545 1.20840 0.92897 0.96567 0.86466 1.42563 1.16219 1.77849 1.01835 1.19628 0.98529 1.34252 0.85149 0.91161 1.25485 0.96622 1.02862 1.01528 1.69801 1.08702 1.52596 1.30589 0.85134 0.77624 0.76933 0.80441 1.19396 1.22078 1.21932 1.21399 0.95234 1.00838 0.93500 0.89498 1.21780 0.96361 1.00110 1.01258 1.21593 0.99657 0.81355 0.97736 0.93328 0.92719 0.92519 0.92079 0.91693 0.92143 0.91962 0.87604 0.86880 0.87361 0.90298 0.91784 0.91717 0.96970 0.96269 0.79124 0.94001 0.93124 0.92735 0.92881 0.89941 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.93 71.98 0.64 -2.31 16 2 C -0.08 -1.37 2.57 -10.79 -0.03 -1.40 16 3 C -0.14 -1.79 9.19 71.98 0.66 -1.12 16 4 C -0.14 -2.25 3.52 29.85 0.11 -2.15 16 5 C 0.51 12.03 7.42 87.66 0.65 12.68 16 6 O -0.58 -17.47 13.38 -3.03 -0.04 -17.51 16 7 N -0.61 -13.59 2.41 -818.86 -1.97 -15.56 16 8 C 0.11 2.28 6.34 86.36 0.55 2.82 16 9 C -0.12 -3.32 4.91 30.67 0.15 -3.17 16 10 C -0.08 -2.33 1.96 -10.77 -0.02 -2.35 16 11 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 12 C 0.16 6.17 5.18 86.38 0.45 6.61 16 13 N -0.74 -36.70 5.32 -343.44 -1.83 -38.53 16 14 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 15 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 17 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 18 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 22 C -0.09 -2.25 2.72 -10.70 -0.03 -2.28 16 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 24 C -0.14 -3.51 8.38 71.98 0.60 -2.91 16 25 C 0.12 2.78 5.83 86.37 0.50 3.28 16 26 H 0.05 1.22 5.95 -2.39 -0.01 1.20 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.24 7.95 -2.39 -0.02 1.22 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 1.53 7.69 -2.39 -0.02 1.52 16 34 H 0.11 1.42 7.94 -2.38 -0.02 1.40 16 35 H 0.11 1.67 5.93 -2.38 -0.01 1.66 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.79 6.34 -2.39 -0.02 1.78 16 38 H 0.06 2.09 7.15 -2.39 -0.02 2.08 16 39 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.02 0.77 6.74 -2.39 -0.02 0.75 16 41 H 0.38 19.45 6.85 -92.71 -0.63 18.82 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.05 1.33 5.97 -2.39 -0.01 1.31 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.43 6.58 -2.39 -0.02 1.41 16 46 H 0.08 2.09 7.00 -2.39 -0.02 2.07 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -66.08 355.29 4.31 -61.77 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.30 Total: 28.19 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.54 Total: -8.59 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.51 Total: -111.64 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.04 Total: -17.51 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -66.08 4.31 -61.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183736618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.072 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds