Wall clock time and date at job start Tue Mar 31 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.52641 * 2 1 4 4 C 1.53197 * 109.49634 * 239.91545 * 2 1 3 5 5 N 1.46928 * 108.77371 * 185.41597 * 4 2 1 6 6 C 1.34777 * 120.62833 * 233.62965 * 5 4 2 7 7 O 1.21283 * 119.99941 * 354.95508 * 6 5 4 8 8 C 1.50703 * 120.00017 * 174.95070 * 6 5 4 9 9 C 1.52996 * 109.47025 * 181.81198 * 8 6 5 10 10 C 1.53004 * 109.47062 * 301.81455 * 8 6 5 11 11 C 1.53001 * 109.46992 * 61.81368 * 8 6 5 12 12 C 1.46925 * 118.73905 * 53.60963 * 5 4 2 13 13 C 1.53192 * 108.77550 * 306.38787 * 12 5 4 14 14 C 1.53039 * 109.49627 * 120.07968 * 2 1 3 15 15 H 1.08999 * 109.46445 * 61.31019 * 14 2 1 16 16 C 1.52996 * 109.46033 * 301.33416 * 14 2 1 17 17 N 1.46505 * 109.47047 * 175.00149 * 16 14 2 18 18 C 1.36941 * 119.99722 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99742 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99988 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46963 * 270.00062 * 22 20 18 24 24 H 1.48498 * 109.47193 * 29.99966 * 22 20 18 25 25 H 1.48496 * 109.46968 * 150.00227 * 22 20 18 26 26 H 1.09007 * 109.47157 * 299.92156 * 1 2 3 27 27 H 1.09002 * 109.47126 * 59.91720 * 1 2 3 28 28 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.58799 * 305.20036 * 4 2 1 30 30 H 1.09000 * 109.58303 * 65.63092 * 4 2 1 31 31 H 1.09001 * 109.47099 * 60.00563 * 9 8 6 32 32 H 1.09002 * 109.46934 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47679 * 300.00201 * 9 8 6 34 34 H 1.08999 * 109.46908 * 49.24068 * 10 8 6 35 35 H 1.09001 * 109.46620 * 169.23761 * 10 8 6 36 36 H 1.08998 * 109.46825 * 289.23795 * 10 8 6 37 37 H 1.09003 * 109.46918 * 70.00348 * 11 8 6 38 38 H 1.08997 * 109.47135 * 190.00175 * 11 8 6 39 39 H 1.09001 * 109.46883 * 310.00867 * 11 8 6 40 40 H 1.08991 * 109.58873 * 66.18090 * 12 5 4 41 41 H 1.09004 * 109.58196 * 186.60631 * 12 5 4 42 42 H 1.08993 * 109.49797 * 294.68373 * 13 12 5 43 43 H 1.09007 * 109.49601 * 174.58750 * 13 12 5 44 44 H 1.08996 * 109.47439 * 55.00031 * 16 14 2 45 45 H 1.09000 * 109.47208 * 295.00234 * 16 14 2 46 46 H 0.96998 * 120.00089 * 0.02562 * 17 16 14 47 47 H 0.96996 * 119.99621 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2496 5 7 3.5045 -0.8293 -1.1695 6 6 4.2811 -0.3858 -2.1779 7 8 3.7726 0.0214 -3.2009 8 6 5.7812 -0.3958 -2.0342 9 6 6.4181 0.1962 -3.2930 10 6 6.1826 0.4409 -0.8177 11 6 6.2659 -1.8348 -1.8459 12 6 4.1052 -1.4268 0.0308 13 6 3.5708 -0.6950 1.2660 14 6 2.0407 -0.7231 1.2484 15 1 1.6968 -1.7573 1.2353 16 6 1.5037 -0.0231 2.4984 17 7 1.8931 -0.7830 3.6889 18 6 1.5225 -0.3449 4.9322 19 1 0.9429 0.5605 5.0352 20 6 1.8910 -1.0652 6.0602 21 7 2.5970 -2.1690 5.9347 22 14 1.3849 -0.4680 7.7563 23 1 2.4325 0.4359 8.2958 24 1 0.0987 0.2677 7.6586 25 1 1.2214 -1.6328 8.6628 26 1 -0.3634 0.5126 0.8907 27 1 -0.3633 0.5151 -0.8893 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6052 -1.7217 -1.2980 30 1 1.7637 -0.1580 -2.1389 31 1 6.0728 1.2213 -3.4272 32 1 7.5031 0.1885 -3.1893 33 1 6.1321 -0.3998 -4.1597 34 1 5.5843 0.1412 0.0427 35 1 7.2385 0.2812 -0.5994 36 1 6.0109 1.4961 -1.0299 37 1 6.1403 -2.3854 -2.7782 38 1 7.3193 -1.8297 -1.5660 39 1 5.6832 -2.3144 -1.0594 40 1 3.8375 -2.4819 0.0869 41 1 5.1895 -1.3247 -0.0137 42 1 3.9159 0.3388 1.2541 43 1 3.9334 -1.1897 2.1672 44 1 0.4166 0.0346 2.4437 45 1 1.9184 0.9831 2.5578 46 1 2.4140 -1.5960 3.5964 47 1 2.8595 -2.4792 5.0539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185538116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:55 Heat of formation + Delta-G solvation = -30.502889 kcal Electronic energy + Delta-G solvation = -23852.556065 eV Core-core repulsion = 20649.399245 eV Total energy + Delta-G solvation = -3203.156820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90844 -38.29365 -36.09270 -35.12207 -33.57840 -32.05962 -30.21575 -27.84282 -27.59127 -26.77312 -26.47684 -23.86801 -22.90260 -22.01155 -21.19997 -19.82920 -18.72413 -17.29537 -16.66619 -16.20392 -15.40770 -15.17238 -14.80745 -14.33924 -14.27249 -14.21940 -13.84475 -13.57101 -13.17340 -12.99973 -12.85297 -12.59336 -12.46237 -12.36665 -12.04699 -11.93989 -11.86924 -11.73832 -11.62606 -11.17690 -10.99534 -10.91094 -10.74437 -10.63059 -10.45768 -10.21717 -10.12261 -9.97833 -9.54190 -9.17694 -8.86997 -8.60526 -6.99038 -6.11270 -3.10208 2.57895 2.94670 3.51021 3.55662 3.69710 4.24185 4.54509 4.64218 4.65994 4.73678 4.85364 4.90575 5.01314 5.03341 5.24053 5.31482 5.35476 5.39730 5.46859 5.48828 5.58074 5.59997 5.63953 5.65937 5.71554 5.75216 5.79843 5.82924 5.86204 5.93377 5.94020 6.02190 6.07940 6.17154 6.21839 6.26315 6.39240 6.42781 6.54482 6.75477 6.84619 7.37789 7.81266 8.13224 8.75298 9.23125 10.09337 10.24695 11.37483 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.004037 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.389138 B = 6933.730630 C = 7675.937043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.525 3.475 7 O -0.548 6.548 8 C -0.086 4.086 9 C -0.125 4.125 10 C -0.160 4.160 11 C -0.159 4.159 12 C 0.083 3.917 13 C -0.127 4.127 14 C -0.089 4.089 15 H 0.070 0.930 16 C 0.162 3.838 17 N -0.743 5.743 18 C -0.330 4.330 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.945 5.945 22 Si 1.082 2.918 23 H -0.296 1.296 24 H -0.295 1.295 25 H -0.288 1.288 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.025 0.975 45 H 0.017 0.983 46 H 0.366 0.634 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 2.150 -16.528 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.313 3.687 7 O -0.425 6.425 8 C -0.089 4.089 9 C -0.182 4.182 10 C -0.217 4.217 11 C -0.216 4.216 12 C -0.039 4.039 13 C -0.166 4.166 14 C -0.108 4.108 15 H 0.089 0.911 16 C 0.035 3.965 17 N -0.389 5.389 18 C -0.461 4.461 19 H 0.081 0.919 20 C -0.243 4.243 21 N -0.591 5.591 22 Si 0.913 3.087 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.214 1.214 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.043 0.957 45 H 0.035 0.965 46 H 0.199 0.801 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.508 2.244 -15.416 16.523 hybrid contribution -0.001 0.127 -1.544 1.549 sum 5.506 2.370 -16.960 17.988 Atomic orbital electron populations 1.21831 0.94374 1.02173 1.02079 1.21447 0.96126 0.99879 0.94146 0.90943 1.21688 0.79049 1.00773 0.98993 1.48074 1.06831 1.60563 1.18291 1.20595 0.89120 0.76397 0.82594 1.90652 1.75583 1.47739 1.28573 1.20758 0.91702 0.97930 0.98501 1.21649 0.99568 1.01422 0.95585 1.22287 1.02584 1.00001 0.96870 1.22274 1.02254 0.93945 1.03083 1.22492 0.99681 0.97313 0.84414 1.21980 0.96198 1.01193 0.97191 1.21347 0.94676 1.00109 0.94697 0.91144 1.20690 0.96729 0.93939 0.85174 1.42387 1.66002 1.28709 1.01774 1.20069 1.31971 1.08792 0.85242 0.91856 1.25743 0.99609 0.96598 1.02340 1.70863 1.40139 1.23107 1.25021 0.83205 0.75253 0.75087 0.75177 1.22347 1.22198 1.21394 0.91353 0.92919 0.92535 0.91669 0.89320 0.92079 0.92095 0.92065 0.90252 0.91263 0.91992 0.92038 0.91204 0.90646 0.91248 0.87444 0.91549 0.89725 0.95724 0.96525 0.80088 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.82 37.15 0.33 -1.49 16 2 C -0.10 -1.28 2.41 -90.50 -0.22 -1.50 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.50 5.70 -3.71 -0.02 1.48 16 5 N -0.61 -7.64 2.97 -172.76 -0.51 -8.16 16 6 C 0.52 7.07 6.49 -10.98 -0.07 7.00 16 7 O -0.55 -9.14 15.42 5.56 0.09 -9.05 16 8 C -0.09 -0.89 0.75 -155.66 -0.12 -1.01 16 9 C -0.12 -1.23 7.72 37.16 0.29 -0.95 16 10 C -0.16 -1.53 8.09 37.16 0.30 -1.23 16 11 C -0.16 -1.37 8.09 37.16 0.30 -1.07 16 12 C 0.08 0.95 3.94 -3.71 -0.01 0.94 16 13 C -0.13 -1.80 4.91 -26.61 -0.13 -1.93 16 14 C -0.09 -1.37 1.73 -90.58 -0.16 -1.53 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.16 3.20 5.41 -4.04 -0.02 3.18 16 17 N -0.74 -18.28 5.32 -59.91 -0.32 -18.60 16 18 C -0.33 -9.26 9.99 -15.06 -0.15 -9.41 16 19 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 21 N -0.95 -28.81 13.70 55.49 0.76 -28.05 16 22 Si 1.08 25.85 29.92 -169.99 -5.09 20.77 16 23 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.07 0.92 6.30 -51.92 -0.33 0.59 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.21 7.04 -51.93 -0.37 0.84 16 31 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.08 0.81 3.88 -51.93 -0.20 0.61 16 35 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16 36 H 0.06 0.62 8.11 -51.93 -0.42 0.19 16 37 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 38 H 0.07 0.49 8.01 -51.93 -0.42 0.08 16 39 H 0.07 0.65 4.74 -51.93 -0.25 0.40 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 1.06 2.83 -51.93 -0.15 0.92 16 42 H 0.07 0.96 7.42 -51.93 -0.39 0.57 16 43 H 0.08 1.34 7.15 -51.93 -0.37 0.97 16 44 H 0.03 0.50 6.14 -51.93 -0.32 0.18 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.37 9.07 5.67 -40.82 -0.23 8.84 16 47 H 0.25 7.56 6.77 -40.82 -0.28 7.29 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -32.53 347.53 -7.59 -40.12 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.97 Total: 6.65 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 0.22 Total: -8.92 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.07 Total: -54.80 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.53 -7.59 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185538116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.619 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds