Wall clock time and date at job start Tue Mar 31 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49965 * 2 1 4 4 C 1.53192 * 109.50045 * 239.89825 * 2 1 3 5 5 N 1.46923 * 108.77309 * 294.68422 * 4 2 1 6 6 C 1.34775 * 120.62437 * 126.41546 * 5 4 2 7 7 O 1.21278 * 120.00512 * 354.17036 * 6 5 4 8 8 C 1.50707 * 119.99740 * 174.17059 * 6 5 4 9 9 C 1.52998 * 109.47096 * 187.69994 * 8 6 5 10 10 C 1.52996 * 109.47293 * 307.70427 * 8 6 5 11 11 C 1.53004 * 109.46964 * 67.69759 * 8 6 5 12 12 C 1.46917 * 118.74095 * 306.39096 * 5 4 2 13 13 C 1.53187 * 108.77892 * 53.60972 * 12 5 4 14 14 C 1.53039 * 109.31245 * 305.36754 * 13 12 5 15 15 H 1.09008 * 109.45959 * 301.34025 * 14 13 12 16 16 C 1.53001 * 109.46269 * 181.38209 * 14 13 12 17 17 N 1.46502 * 109.47125 * 64.93124 * 16 14 13 18 18 C 1.36937 * 120.00483 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99278 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00218 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46781 * 90.00561 * 22 20 18 24 24 H 1.48505 * 109.46848 * 210.00080 * 22 20 18 25 25 H 1.48495 * 109.47392 * 330.00103 * 22 20 18 26 26 H 1.09000 * 109.47690 * 299.93918 * 1 2 3 27 27 H 1.09007 * 109.46864 * 59.93689 * 1 2 3 28 28 H 1.08998 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.58255 * 54.47630 * 4 2 1 30 30 H 1.08996 * 109.58494 * 174.89484 * 4 2 1 31 31 H 1.08995 * 109.47372 * 60.00136 * 9 8 6 32 32 H 1.09005 * 109.47040 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47332 * 299.99856 * 9 8 6 34 34 H 1.08993 * 109.47545 * 70.32900 * 10 8 6 35 35 H 1.08995 * 109.47565 * 190.34088 * 10 8 6 36 36 H 1.09007 * 109.46541 * 310.33177 * 10 8 6 37 37 H 1.09002 * 109.46692 * 72.24038 * 11 8 6 38 38 H 1.08996 * 109.47014 * 192.23362 * 11 8 6 39 39 H 1.08992 * 109.47569 * 312.24090 * 11 8 6 40 40 H 1.09000 * 109.58902 * 293.82031 * 12 5 4 41 41 H 1.09000 * 109.58935 * 173.40326 * 12 5 4 42 42 H 1.08995 * 109.50247 * 185.41476 * 13 12 5 43 43 H 1.09003 * 109.52301 * 65.33214 * 13 12 5 44 44 H 1.09001 * 109.47392 * 184.92704 * 16 14 13 45 45 H 1.08996 * 109.47347 * 304.93437 * 16 14 13 46 46 H 0.97009 * 119.99692 * 0.02562 * 17 16 14 47 47 H 0.96997 * 120.00465 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7242 -1.2493 5 7 1.6516 -2.1385 -1.1687 6 6 0.9749 -2.7227 -2.1773 7 8 0.5897 -2.0569 -3.1150 8 6 0.6968 -4.2034 -2.1400 9 6 0.0927 -4.6427 -3.4753 10 6 2.0033 -4.9617 -1.8971 11 6 -0.2878 -4.5091 -1.0095 12 6 2.0140 -2.9039 0.0318 13 6 1.5029 -2.1553 1.2668 14 6 2.0407 -0.7227 1.2486 15 1 3.1305 -0.7439 1.2357 16 6 1.5605 0.0179 2.4984 17 7 2.1465 -0.6026 3.6891 18 6 1.8576 -0.1065 4.9324 19 1 1.1979 0.7424 5.0350 20 6 2.4124 -0.6949 6.0606 21 7 3.2167 -1.7292 5.9354 22 14 2.0176 -0.0185 7.7565 23 1 0.8153 -0.7039 8.2950 24 1 3.1695 -0.2539 8.6637 25 1 1.7542 1.4396 7.6590 26 1 -0.3634 0.5129 0.8905 27 1 -0.3633 0.5149 -0.8895 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6008 -0.2738 -2.1388 30 1 3.1275 -0.6467 -1.2977 31 1 0.7942 -4.4250 -4.2806 32 1 -0.1088 -5.7136 -3.4481 33 1 -0.8381 -4.1025 -3.6482 34 1 2.3382 -4.7902 -0.8742 35 1 1.8387 -6.0280 -2.0517 36 1 2.7639 -4.6071 -2.5928 37 1 -1.2801 -4.1521 -1.2856 38 1 -0.3231 -5.5851 -0.8395 39 1 0.0381 -4.0077 -0.0983 40 1 3.0979 -3.0042 0.0879 41 1 1.5555 -3.8918 -0.0124 42 1 1.8479 -2.6620 2.1680 43 1 0.4132 -2.1350 1.2554 44 1 1.8695 1.0618 2.4434 45 1 0.4736 -0.0367 2.5580 46 1 2.7393 -1.3649 3.5968 47 1 3.6041 -2.1405 6.7238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185538127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:03 Heat of formation + Delta-G solvation = -29.180239 kcal Electronic energy + Delta-G solvation = -23991.139389 eV Core-core repulsion = 20788.039924 eV Total energy + Delta-G solvation = -3203.099465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89765 -38.29871 -36.01805 -34.89588 -33.19506 -31.70478 -30.32904 -27.70736 -27.57074 -26.92520 -26.63414 -23.96474 -22.97092 -22.44790 -20.99322 -19.35845 -18.23905 -17.10853 -16.58502 -16.02083 -15.53872 -15.10246 -14.64272 -14.34488 -14.23319 -14.04877 -13.79806 -13.58464 -13.15422 -12.84901 -12.64976 -12.48092 -12.38810 -12.35966 -12.15364 -11.94973 -11.82712 -11.51643 -11.32149 -11.13802 -11.07914 -10.92138 -10.83800 -10.71848 -10.31541 -10.16863 -10.09990 -9.92905 -9.63184 -9.46863 -8.86240 -8.51188 -6.90876 -5.77408 -3.05104 2.65133 3.02778 3.42890 3.48420 3.49783 4.28697 4.58528 4.59454 4.67989 4.82419 4.91513 5.03981 5.10420 5.16861 5.26374 5.34223 5.41133 5.42928 5.53560 5.54702 5.61789 5.64481 5.67228 5.73042 5.76539 5.84753 5.86227 5.91732 5.96224 6.03820 6.07637 6.10614 6.15283 6.24753 6.32822 6.40088 6.48529 6.54738 6.68932 6.83159 6.95537 7.46178 7.70029 8.20609 8.42190 9.53362 10.11859 10.46552 11.45644 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027191 B = 0.003950 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.499710 B = 7086.462966 C = 7603.117055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.601 5.601 6 C 0.525 3.475 7 O -0.548 6.548 8 C -0.086 4.086 9 C -0.125 4.125 10 C -0.158 4.158 11 C -0.155 4.155 12 C 0.084 3.916 13 C -0.129 4.129 14 C -0.088 4.088 15 H 0.070 0.930 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.017 0.983 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 -5.934 -16.878 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.334 5.334 6 C 0.313 3.687 7 O -0.426 6.426 8 C -0.089 4.089 9 C -0.182 4.182 10 C -0.215 4.215 11 C -0.213 4.213 12 C -0.038 4.038 13 C -0.167 4.167 14 C -0.107 4.107 15 H 0.089 0.911 16 C 0.031 3.969 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.802 -5.463 -17.242 18.482 hybrid contribution 0.112 0.153 1.113 1.129 sum -3.690 -5.310 -16.129 17.377 Atomic orbital electron populations 1.21844 0.94940 1.01916 1.01354 1.21460 0.96636 0.99404 0.94259 0.90192 1.21667 0.99181 0.80632 0.99182 1.48023 1.55898 1.11375 1.18089 1.20554 0.76865 0.89634 0.81663 1.90649 1.51711 1.65362 1.34885 1.20762 0.97661 0.91983 0.98511 1.21647 1.01368 1.00515 0.94692 1.22297 0.95502 1.00276 1.03407 1.22157 0.98783 1.02721 0.97591 1.22517 1.00653 0.96214 0.84393 1.22004 1.01339 0.96150 0.97223 1.21292 1.00193 0.94687 0.94489 0.91116 1.20716 0.95897 0.94639 0.85683 1.42382 1.56826 1.37565 1.00842 1.19234 1.22976 1.10786 0.83870 0.91315 1.24707 1.00091 0.98409 0.97761 1.69645 1.35760 1.24442 1.28509 0.86210 0.77251 0.78286 0.84583 1.21763 1.21794 1.20811 0.92051 0.93384 0.92646 0.89314 0.91717 0.92290 0.92153 0.91898 0.90330 0.91516 0.92247 0.91918 0.91236 0.90660 0.91312 0.87690 0.89442 0.91379 0.96549 0.96100 0.78324 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.38 37.16 0.31 -1.62 16 2 C -0.10 -1.30 2.72 -90.50 -0.25 -1.54 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.46 5.84 -3.71 -0.02 1.44 16 5 N -0.60 -7.45 2.39 -172.78 -0.41 -7.87 16 6 C 0.52 6.96 6.45 -10.98 -0.07 6.89 16 7 O -0.55 -9.05 15.40 5.56 0.09 -8.96 16 8 C -0.09 -0.88 0.75 -155.66 -0.12 -1.00 16 9 C -0.12 -1.22 7.75 37.16 0.29 -0.93 16 10 C -0.16 -1.35 7.97 37.16 0.30 -1.05 16 11 C -0.16 -1.45 8.10 37.16 0.30 -1.15 16 12 C 0.08 0.97 3.98 -3.72 -0.01 0.95 16 13 C -0.13 -1.83 4.75 -26.61 -0.13 -1.96 16 14 C -0.09 -1.34 1.96 -90.58 -0.18 -1.52 16 15 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 16 C 0.16 3.09 5.19 -4.04 -0.02 3.07 16 17 N -0.73 -18.00 5.32 -59.91 -0.32 -18.31 16 18 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 27 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.05 0.78 5.97 -51.93 -0.31 0.47 16 29 H 0.09 1.20 7.00 -51.93 -0.36 0.83 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.68 8.02 -51.93 -0.42 0.26 16 34 H 0.08 0.65 4.71 -51.93 -0.24 0.40 16 35 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 36 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.07 0.75 4.97 -51.93 -0.26 0.49 16 40 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.11 1.04 2.56 -51.93 -0.13 0.91 16 42 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 43 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 46 H 0.38 9.76 6.84 -40.82 -0.28 9.48 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -31.30 346.74 -7.56 -38.87 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.00 Total: 6.47 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 0.16 Total: -5.64 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.01 Total: -53.18 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.30 -7.56 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185538127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.687 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds