Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 N 1.46496 * 109.47528 * 180.02562 * 3 2 1 5 5 C 1.46491 * 120.00453 * 89.99575 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.00133 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.34780 * 119.99526 * 270.00078 * 4 3 2 15 15 O 1.21593 * 119.99970 * 179.97438 * 14 4 3 16 16 N 1.34778 * 120.00445 * 359.97438 * 14 4 3 17 17 C 1.46500 * 120.00357 * 179.97438 * 16 14 4 18 18 H 1.09004 * 109.46787 * 35.00075 * 17 16 14 19 19 C 1.52994 * 109.46946 * 155.00298 * 17 16 14 20 20 C 1.53003 * 109.47120 * 180.02562 * 19 17 16 21 21 C 1.52994 * 109.47274 * 300.00417 * 20 19 17 22 22 H 1.09005 * 109.47004 * 299.99750 * 21 20 19 23 23 C 1.53003 * 109.47274 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.47414 * 59.99275 * 21 20 19 25 25 C 1.52996 * 109.47063 * 300.00419 * 24 21 20 26 26 H 1.08993 * 109.46853 * 300.00384 * 1 2 3 27 27 H 1.08999 * 109.46771 * 60.00283 * 1 2 3 28 28 H 1.08997 * 109.46918 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46996 * 240.00117 * 2 1 3 30 30 H 1.08999 * 109.46771 * 119.99717 * 2 1 3 31 31 H 1.09005 * 109.47023 * 59.99475 * 3 2 1 32 32 H 1.09006 * 109.47021 * 300.00273 * 3 2 1 33 33 H 1.09004 * 109.47166 * 330.00399 * 5 4 3 34 34 H 1.08994 * 109.47507 * 210.00106 * 5 4 3 35 35 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 36 36 H 0.97001 * 119.99946 * 0.02562 * 16 14 4 37 37 H 1.08998 * 109.47606 * 299.99876 * 19 17 16 38 38 H 1.09004 * 109.47560 * 60.00250 * 19 17 16 39 39 H 1.09005 * 109.46901 * 60.00230 * 20 19 17 40 40 H 1.08997 * 109.47048 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47182 * 59.99733 * 23 21 20 42 42 H 1.08998 * 109.46747 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.46733 * 299.99287 * 23 21 20 44 44 H 1.09005 * 109.46647 * 60.00257 * 24 21 20 45 45 H 1.09002 * 109.46906 * 179.97438 * 24 21 20 46 46 H 1.08990 * 109.47247 * 299.99402 * 25 24 21 47 47 H 1.09001 * 109.46753 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2371 1.4427 -1.2695 6 6 4.4880 2.8635 -1.7045 7 1 4.1377 3.6844 -1.0963 8 6 5.1705 3.1156 -2.8758 9 7 5.5974 2.1161 -3.6162 10 14 5.4882 4.8768 -3.4110 11 1 6.7827 5.3391 -2.8489 12 1 5.5411 4.9417 -4.8936 13 1 4.3937 5.7499 -2.9161 14 6 4.1793 1.4424 1.1664 15 8 5.3953 1.4419 1.1660 16 7 3.5059 1.4427 2.3339 17 6 4.2389 1.4419 3.6023 18 1 5.1500 2.0308 3.4958 19 6 3.3625 2.0519 4.6980 20 6 4.1282 2.0518 6.0227 21 6 4.4918 0.6147 6.4014 22 1 3.5810 0.0256 6.5082 23 6 5.2570 0.6145 7.7264 24 6 5.3682 0.0046 5.3056 25 6 4.6024 0.0048 3.9811 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6477 0.9289 -2.0291 34 1 5.1895 0.9289 -1.1396 35 1 6.0772 2.2935 -4.4404 36 1 2.5359 1.4426 2.3343 37 1 3.1038 3.0759 4.4285 38 1 2.4514 1.4631 4.8046 39 1 5.0390 2.6409 5.9159 40 1 3.5040 2.4868 6.8032 41 1 4.6322 1.0489 8.5068 42 1 5.5156 -0.4094 7.9963 43 1 6.1678 1.2037 7.6200 44 1 6.2790 0.5938 5.1988 45 1 5.6276 -1.0190 5.5757 46 1 3.6917 -0.5843 4.0878 47 1 5.2269 -0.4294 3.2003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191808308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -64.527485 kcal Electronic energy + Delta-G solvation = -23310.902634 eV Core-core repulsion = 20106.270397 eV Total energy + Delta-G solvation = -3204.632237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79938 -38.34843 -35.60933 -34.32229 -33.01229 -31.93916 -30.83019 -30.71929 -27.43070 -25.98444 -25.17226 -22.80445 -22.70895 -21.49283 -20.96868 -19.97210 -18.99289 -17.32053 -16.34032 -16.10106 -15.17308 -14.78650 -14.48827 -14.36244 -14.26884 -14.23633 -13.59566 -13.52643 -13.41977 -12.73455 -12.62859 -12.35393 -12.22120 -12.16786 -11.83587 -11.69984 -11.59977 -11.19812 -11.13849 -11.06519 -10.93014 -10.78760 -10.73539 -10.51462 -10.40423 -10.34034 -10.09775 -10.04711 -9.55527 -9.09901 -8.50307 -8.36220 -7.49470 -5.96986 -4.00966 3.35383 3.40937 3.41781 3.48730 4.08326 4.46463 4.59123 4.62993 4.64778 4.84704 5.03308 5.18060 5.20849 5.31000 5.35315 5.36717 5.45202 5.48570 5.50618 5.51907 5.56164 5.66604 5.72273 5.73707 5.85252 5.94716 5.97064 6.05003 6.08370 6.09783 6.15564 6.19154 6.24026 6.37551 6.41898 6.48827 6.56517 6.96625 7.10263 7.48004 7.67120 7.85745 8.05031 8.33346 8.85729 9.00974 9.49570 9.66288 11.10753 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.004328 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.033760 B = 6467.427462 C = 7426.799749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.116 3.884 4 N -0.614 5.614 5 C 0.262 3.738 6 C -0.523 4.523 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.701 3.299 15 O -0.587 6.587 16 N -0.755 5.755 17 C 0.166 3.834 18 H 0.084 0.916 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.094 4.094 22 H 0.068 0.932 23 C -0.147 4.147 24 C -0.111 4.111 25 C -0.129 4.129 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.388 0.612 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -4.065 18.331 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C -0.009 4.009 4 N -0.349 5.349 5 C 0.142 3.858 6 C -0.562 4.562 7 H 0.074 0.926 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.402 3.598 15 O -0.464 6.464 16 N -0.412 5.412 17 C 0.060 3.940 18 H 0.103 0.897 19 C -0.164 4.164 20 C -0.147 4.147 21 C -0.112 4.112 22 H 0.086 0.914 23 C -0.205 4.205 24 C -0.149 4.149 25 C -0.168 4.168 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.223 0.777 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.897 -4.089 18.092 20.160 hybrid contribution -0.323 0.945 -0.446 1.094 sum -8.220 -3.144 17.647 19.719 Atomic orbital electron populations 1.21699 0.95772 1.01356 1.01689 1.22014 0.95375 0.98325 1.02603 1.21366 0.81868 0.95499 1.02141 1.47528 1.05017 1.75873 1.06476 1.19136 0.92206 0.97137 0.77272 1.21497 1.35976 0.92574 1.06136 0.92595 1.24927 0.95494 0.97277 0.96459 1.69939 1.38527 1.30607 1.14484 0.86522 0.78730 0.84841 0.77442 1.20624 1.21220 1.20015 1.15951 0.85491 0.78033 0.80279 1.90875 1.11677 1.57844 1.86041 1.45407 1.09060 1.82083 1.04678 1.20660 0.95615 0.95994 0.81763 0.89743 1.21799 0.98657 1.01239 0.94662 1.21530 1.00387 0.96571 0.96245 1.21176 0.98783 0.96473 0.94778 0.91351 1.21832 1.00310 1.01584 0.96736 1.21556 0.98602 1.00682 0.94073 1.21940 1.00306 0.97345 0.97182 0.93031 0.92491 0.92963 0.91294 0.92378 0.92546 0.90010 0.95158 0.93958 0.92835 0.77733 0.91430 0.91783 0.91620 0.91847 0.92923 0.92834 0.92642 0.91706 0.92067 0.92353 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.14 -2.02 6.26 -26.73 -0.17 -2.19 16 3 C 0.12 1.92 5.17 -4.04 -0.02 1.90 16 4 N -0.61 -13.41 2.46 -180.81 -0.44 -13.86 16 5 C 0.26 7.03 5.16 -5.20 -0.03 7.01 16 6 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 10 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.70 15.36 8.24 -86.91 -0.72 14.64 16 15 O -0.59 -15.60 15.58 5.28 0.08 -15.52 16 16 N -0.75 -12.24 4.94 -58.68 -0.29 -12.53 16 17 C 0.17 2.35 2.45 -67.93 -0.17 2.18 16 18 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 19 C -0.13 -1.33 5.39 -26.73 -0.14 -1.47 16 20 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 21 C -0.09 -0.84 2.72 -90.62 -0.25 -1.09 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 C -0.15 -1.15 9.20 37.16 0.34 -0.81 16 24 C -0.11 -1.20 5.21 -26.73 -0.14 -1.34 16 25 C -0.13 -1.69 5.50 -26.73 -0.15 -1.84 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.79 6.36 -51.93 -0.33 0.46 16 32 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.39 5.26 6.33 -40.82 -0.26 5.00 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -33.21 370.76 -9.91 -43.12 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.94 Total: 1.51 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.62 Total: 0.75 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.00 Total: -52.75 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.21 -9.91 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191808308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.409 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds