Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 C 1.52998 * 109.47514 * 120.00294 * 2 1 3 5 5 H 1.08998 * 109.47184 * 300.00283 * 4 2 1 6 6 C 1.53004 * 109.47176 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47088 * 60.00178 * 4 2 1 8 8 C 1.50697 * 109.47160 * 185.00365 * 7 4 2 9 9 O 1.21276 * 120.00275 * 359.97438 * 8 7 4 10 10 N 1.34781 * 120.00034 * 179.97438 * 8 7 4 11 11 C 1.46498 * 119.99967 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.64384 * 31.86081 * 11 10 8 13 13 C 1.54339 * 110.84969 * 268.68921 * 11 10 8 14 14 N 1.47021 * 107.26633 * 219.67238 * 13 11 10 15 15 C 1.36931 * 125.64962 * 178.85047 * 14 13 11 16 16 H 1.08002 * 120.00438 * 179.69777 * 15 14 13 17 17 C 1.38817 * 119.99680 * 359.41735 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.47426 * 108.70417 * 358.58904 * 14 13 11 24 24 C 1.54919 * 104.83230 * 24.35268 * 23 14 13 25 25 H 1.08998 * 111.00144 * 81.06524 * 24 23 14 26 26 C 1.52995 * 111.00455 * 204.91772 * 24 23 14 27 27 H 1.09002 * 109.47605 * 59.99713 * 1 2 3 28 28 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47126 * 299.99388 * 1 2 3 30 30 H 1.08998 * 109.47126 * 240.00612 * 2 1 3 31 31 H 1.09001 * 109.47202 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47117 * 300.00585 * 3 2 1 33 33 H 1.08998 * 109.46623 * 60.00304 * 3 2 1 34 34 H 1.08997 * 109.47196 * 299.99649 * 6 4 2 35 35 H 1.08993 * 109.47020 * 60.00106 * 6 4 2 36 36 H 1.08999 * 109.46804 * 179.97438 * 6 4 2 37 37 H 1.09002 * 109.47381 * 64.99767 * 7 4 2 38 38 H 1.09011 * 109.47195 * 304.99866 * 7 4 2 39 39 H 0.97003 * 119.99850 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.98868 * 100.19786 * 13 11 10 41 41 H 1.09001 * 109.77953 * 339.02970 * 13 11 10 42 42 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 43 43 H 1.09003 * 110.37118 * 143.18886 * 23 14 13 44 44 H 1.09001 * 110.36564 * 265.51518 * 23 14 13 45 45 H 1.08996 * 109.47157 * 58.54463 * 26 24 23 46 46 H 1.09002 * 109.47021 * 178.54810 * 26 24 23 47 47 H 1.09005 * 109.47154 * 298.54608 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 3.5701 -0.7207 1.2494 7 6 1.5301 -2.1638 1.2491 8 6 1.9288 -2.8376 2.5367 9 8 2.5591 -2.2246 3.3720 10 7 1.5848 -4.1215 2.7601 11 6 1.9729 -4.7766 4.0116 12 1 2.0026 -4.0565 4.8292 13 6 3.3352 -5.4862 3.8608 14 7 3.2448 -6.7628 4.5844 15 6 4.2380 -7.7011 4.6746 16 1 4.0742 -8.6087 5.2366 17 6 5.4536 -7.4883 4.0388 18 7 5.6533 -6.3823 3.3539 19 14 6.8058 -8.7718 4.1554 20 1 6.3217 -10.0542 3.5842 21 1 7.9948 -8.3085 3.3960 22 1 7.1761 -8.9728 5.5794 23 6 1.9100 -6.8626 5.2022 24 6 1.0057 -5.9437 4.3431 25 1 0.6819 -6.4526 3.4352 26 6 -0.1961 -5.4478 5.1496 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.9337 -1.2342 0.3594 35 1 3.9329 0.3071 1.2497 36 1 3.9334 -1.2342 2.1396 37 1 1.9647 -2.7028 0.4072 38 1 0.4437 -2.1652 1.1596 39 1 1.0803 -4.6117 2.0921 40 1 4.1254 -4.8711 4.2914 41 1 3.5398 -5.6715 2.8063 42 1 6.5028 -6.2335 2.9099 43 1 1.5505 -7.8909 5.1647 44 1 1.9413 -6.5080 6.2324 45 1 0.1544 -4.9060 6.0280 46 1 -0.8003 -4.7845 4.5306 47 1 -0.7988 -6.2997 5.4647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206545087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = -60.567340 kcal Electronic energy + Delta-G solvation = -23279.204504 eV Core-core repulsion = 20074.743992 eV Total energy + Delta-G solvation = -3204.460512 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09718 -39.41378 -37.93545 -35.57983 -34.24969 -32.42594 -32.15627 -30.14041 -28.99671 -27.46768 -26.98850 -25.30049 -23.88516 -22.24508 -21.52648 -20.92353 -20.33536 -18.89428 -17.95078 -17.39853 -16.88937 -16.28832 -15.84514 -15.66544 -15.32842 -15.11694 -14.71861 -14.53424 -14.39127 -14.07051 -13.80269 -13.71043 -13.34692 -13.13636 -13.09646 -12.86459 -12.76266 -12.65731 -12.57265 -12.56555 -12.22820 -12.02909 -11.92632 -11.86312 -11.65953 -11.53383 -11.45743 -11.32436 -11.24142 -10.75561 -10.57511 -9.90541 -8.93841 -7.85525 -5.23761 1.43278 1.47592 1.53903 1.77322 2.29957 2.49562 3.32393 3.57853 3.74008 3.81554 3.86831 3.97953 4.07313 4.12053 4.22240 4.30268 4.51895 4.60446 4.61375 4.65081 4.72747 4.74485 4.79152 4.84764 4.87388 4.95278 5.06103 5.06333 5.07734 5.12327 5.14014 5.24720 5.28067 5.31959 5.33192 5.43389 5.49559 5.50281 5.60171 5.62488 5.65685 5.82253 6.15613 6.70813 7.05702 7.42958 7.74875 8.38872 9.23350 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.004179 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.420884 B = 6698.861719 C = 7870.573148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.065 4.065 5 H 0.060 0.940 6 C -0.154 4.154 7 C -0.130 4.130 8 C 0.503 3.497 9 O -0.584 6.584 10 N -0.706 5.706 11 C 0.136 3.864 12 H 0.069 0.931 13 C 0.190 3.810 14 N -0.628 5.628 15 C -0.245 4.245 16 H 0.088 0.912 17 C -0.069 4.069 18 N -0.953 5.953 19 Si 0.981 3.019 20 H -0.271 1.271 21 H -0.297 1.297 22 H -0.278 1.278 23 C 0.131 3.869 24 C -0.094 4.094 25 H 0.092 0.908 26 C -0.128 4.128 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.413 0.587 40 H -0.015 1.015 41 H 0.018 0.982 42 H 0.244 0.756 43 H 0.055 0.945 44 H 0.022 0.978 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 9.906 -7.835 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.084 4.084 5 H 0.078 0.922 6 C -0.211 4.211 7 C -0.169 4.169 8 C 0.292 3.708 9 O -0.464 6.464 10 N -0.357 5.357 11 C 0.029 3.971 12 H 0.087 0.913 13 C 0.063 3.937 14 N -0.355 5.355 15 C -0.374 4.374 16 H 0.106 0.894 17 C -0.262 4.262 18 N -0.602 5.602 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.223 1.223 22 H -0.204 1.204 23 C 0.006 3.994 24 C -0.113 4.113 25 H 0.111 0.889 26 C -0.185 4.185 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.249 0.751 40 H 0.003 0.997 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.954 10.300 -7.307 19.573 hybrid contribution 1.435 -0.803 0.040 1.645 sum -13.518 9.497 -7.267 18.049 Atomic orbital electron populations 1.21923 0.94150 1.02531 1.02063 1.21129 0.96538 0.96157 0.96771 1.21889 1.01051 0.95755 1.01939 1.20874 0.95065 0.93684 0.98731 0.92161 1.21963 0.96389 1.01660 1.01094 1.21885 1.04723 0.96528 0.93766 1.21512 0.78062 0.81575 0.89668 1.90654 1.41267 1.65538 1.48929 1.45839 1.57151 1.12533 1.20210 1.21992 0.94657 0.93686 0.86721 0.91276 1.21105 0.92277 0.85467 0.94856 1.44736 1.12028 1.18666 1.60055 1.19495 0.92571 0.98413 1.26942 0.89433 1.25735 1.00469 0.99802 1.00149 1.70240 1.24183 1.27151 1.38596 0.85114 0.78067 0.78348 0.77585 1.19648 1.22314 1.20355 1.21861 0.84302 0.98401 0.94834 1.22532 0.94644 0.94238 0.99918 0.88928 1.21637 0.95899 1.01680 0.99300 0.91683 0.91486 0.93032 0.90502 0.92929 0.91556 0.93115 0.92916 0.92005 0.94549 0.87636 0.85620 0.75069 0.99677 0.96357 0.94663 0.92639 0.95972 0.93406 0.91076 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.85 71.98 0.64 -1.33 16 2 C -0.09 -1.45 2.51 -10.79 -0.03 -1.48 16 3 C -0.15 -2.40 8.84 71.98 0.64 -1.76 16 4 C -0.06 -1.49 1.62 -10.79 -0.02 -1.50 16 5 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 6 C -0.15 -4.32 8.58 71.98 0.62 -3.70 16 7 C -0.13 -2.84 4.96 29.85 0.15 -2.69 16 8 C 0.50 16.51 7.55 87.66 0.66 17.17 16 9 O -0.58 -24.95 13.61 -3.02 -0.04 -25.00 16 10 N -0.71 -22.21 5.11 -436.90 -2.23 -24.44 16 11 C 0.14 5.32 2.78 46.19 0.13 5.45 16 12 H 0.07 2.97 7.42 -2.39 -0.02 2.96 16 13 C 0.19 10.02 5.13 86.73 0.45 10.46 16 14 N -0.63 -33.39 3.39 -691.93 -2.35 -35.74 16 15 C -0.25 -14.14 10.28 84.04 0.86 -13.28 16 16 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 17 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 18 N -0.95 -60.36 10.31 21.65 0.22 -60.13 16 19 Si 0.98 47.04 29.55 68.60 2.03 49.06 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 C 0.13 5.30 6.70 86.86 0.58 5.88 16 24 C -0.09 -2.98 3.27 -9.40 -0.03 -3.01 16 25 H 0.09 2.69 8.01 -2.39 -0.02 2.67 16 26 C -0.13 -3.02 9.29 71.98 0.67 -2.35 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.75 6.32 -2.39 -0.02 0.74 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.05 0.91 6.43 -2.39 -0.02 0.89 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.56 6.43 -2.39 -0.02 1.54 16 36 H 0.04 1.34 5.95 -2.39 -0.01 1.32 16 37 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.13 1.90 6.17 -2.38 -0.01 1.89 16 39 H 0.41 9.91 8.56 -92.71 -0.79 9.11 16 40 H -0.02 -0.96 7.53 -2.39 -0.02 -0.98 16 41 H 0.02 1.06 7.24 -2.39 -0.02 1.05 16 42 H 0.24 15.16 8.31 -92.70 -0.77 14.39 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16 45 H 0.05 1.21 8.11 -2.39 -0.02 1.19 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -76.35 360.87 3.54 -72.80 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.13 Total: 19.17 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.78 Total: 4.27 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.36 Total: -120.32 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -76.35 3.54 -72.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206545087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.238 kcal (2) G-P(sol) polarization free energy of solvation -76.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds