Wall clock time and date at job start Tue Mar 31 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47379 * 2 1 4 4 C 1.53001 * 109.47186 * 119.99911 * 2 1 3 5 5 H 1.09003 * 109.46869 * 299.99651 * 4 2 1 6 6 C 1.52998 * 109.47199 * 60.00012 * 4 2 1 7 7 C 1.52997 * 109.47186 * 180.02562 * 4 2 1 8 8 C 1.50697 * 109.47160 * 175.00210 * 7 4 2 9 9 O 1.21276 * 120.00275 * 359.97438 * 8 7 4 10 10 N 1.34781 * 120.00034 * 179.97438 * 8 7 4 11 11 C 1.46498 * 119.99967 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.64384 * 31.86081 * 11 10 8 13 13 C 1.54339 * 110.84969 * 268.68921 * 11 10 8 14 14 N 1.47021 * 107.26633 * 219.67238 * 13 11 10 15 15 C 1.36931 * 125.64962 * 178.85047 * 14 13 11 16 16 H 1.08002 * 120.00438 * 179.69777 * 15 14 13 17 17 C 1.38817 * 119.99680 * 359.41735 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48508 * 109.46872 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99997 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00044 * 19 17 15 23 23 C 1.47426 * 108.70417 * 358.58904 * 14 13 11 24 24 C 1.54919 * 104.83230 * 24.35268 * 23 14 13 25 25 H 1.08998 * 111.00144 * 81.06524 * 24 23 14 26 26 C 1.53001 * 111.00290 * 204.87998 * 24 23 14 27 27 H 1.08995 * 109.47441 * 60.00030 * 1 2 3 28 28 H 1.09001 * 109.47393 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47146 * 300.00041 * 1 2 3 30 30 H 1.09003 * 109.46932 * 239.99525 * 2 1 3 31 31 H 1.08998 * 109.47647 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46938 * 300.00322 * 3 2 1 33 33 H 1.08994 * 109.47226 * 59.99820 * 3 2 1 34 34 H 1.08993 * 109.47254 * 59.99510 * 6 4 2 35 35 H 1.09001 * 109.47380 * 180.02562 * 6 4 2 36 36 H 1.09007 * 109.47140 * 299.99916 * 6 4 2 37 37 H 1.09002 * 109.47381 * 54.99612 * 7 4 2 38 38 H 1.09011 * 109.47195 * 294.99711 * 7 4 2 39 39 H 0.97003 * 119.99850 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.98868 * 100.19786 * 13 11 10 41 41 H 1.09001 * 109.77953 * 339.02970 * 13 11 10 42 42 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 43 43 H 1.09003 * 110.37118 * 143.18886 * 23 14 13 44 44 H 1.09001 * 110.36564 * 265.51518 * 23 14 13 45 45 H 1.08996 * 109.47165 * 58.54755 * 26 24 23 46 46 H 1.09002 * 109.46767 * 178.54919 * 26 24 23 47 47 H 1.09002 * 109.47184 * 298.54200 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2493 7 6 3.5700 -0.7207 1.2496 8 6 4.0722 -1.3212 2.5373 9 8 3.2842 -1.7108 3.3727 10 7 5.3973 -1.4253 2.7605 11 6 5.8856 -2.0085 4.0125 12 1 5.1969 -2.7714 4.3754 13 6 6.0999 -0.9155 5.0809 14 7 7.3336 -1.2508 5.8069 15 6 7.8867 -0.5170 6.8221 16 1 8.7971 -0.8521 7.2968 17 6 7.2806 0.6609 7.2370 18 7 6.1713 1.0694 6.6584 19 14 8.0393 1.6661 8.6167 20 1 9.2744 0.9953 9.0963 21 1 8.3754 3.0223 8.1139 22 1 7.0711 1.7793 9.7369 23 6 7.8731 -2.5114 5.2653 24 6 7.3086 -2.5981 3.8252 25 1 7.8963 -1.9895 3.1380 26 6 7.2430 -4.0504 3.3484 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.8932 -2.6775 0.3593 35 1 1.8930 -2.6774 2.1395 36 1 0.4399 -2.1637 1.2493 37 1 3.9330 0.3032 1.1602 38 1 3.9337 -1.3100 0.4077 39 1 6.0277 -1.1140 2.0921 40 1 5.2565 -0.8986 5.7711 41 1 6.2062 0.0561 4.5984 42 1 5.7475 1.8923 6.9487 43 1 8.9625 -2.4799 5.2444 44 1 7.5285 -3.3578 5.8594 45 1 6.6158 -4.6278 4.0275 46 1 6.8192 -4.0844 2.3448 47 1 8.2474 -4.4735 3.3332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206545088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:09 Heat of formation + Delta-G solvation = -39.986970 kcal Electronic energy + Delta-G solvation = -23267.387482 eV Core-core repulsion = 20063.819402 eV Total energy + Delta-G solvation = -3203.568080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.74059 -37.95309 -36.79682 -33.82838 -32.58878 -31.48096 -30.35247 -28.91784 -27.62581 -26.17029 -25.55541 -23.69613 -22.80391 -20.60961 -19.96764 -19.64096 -19.28445 -16.88201 -16.66295 -15.84748 -15.39539 -14.81563 -14.66335 -14.38225 -13.96623 -13.74746 -13.49239 -13.20568 -12.92169 -12.74813 -12.56651 -12.38783 -12.07475 -11.86206 -11.80382 -11.68756 -11.64560 -11.31905 -11.09974 -10.99757 -10.78042 -10.64358 -10.57418 -10.45665 -10.38005 -10.30934 -9.95369 -9.89791 -9.68344 -9.24691 -8.60085 -8.36666 -6.81127 -5.67339 -3.02457 3.09069 3.41452 3.46572 3.49537 3.62176 4.51916 4.72002 4.73724 4.84112 5.06297 5.10195 5.28482 5.33964 5.42170 5.47574 5.52517 5.56196 5.57010 5.58772 5.67979 5.75688 5.79215 5.86004 5.89529 5.99128 6.02230 6.03269 6.04579 6.16945 6.18101 6.22711 6.28884 6.38130 6.49440 6.52298 6.56170 6.65132 6.86383 6.99650 7.60004 7.62961 7.87793 8.01153 8.28049 8.71464 9.23981 9.84662 10.49846 11.43340 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.004232 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.264145 B = 6615.436552 C = 7767.838310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.070 4.070 5 H 0.079 0.921 6 C -0.153 4.153 7 C -0.140 4.140 8 C 0.511 3.489 9 O -0.538 6.538 10 N -0.715 5.715 11 C 0.120 3.880 12 H 0.087 0.913 13 C 0.174 3.826 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.076 0.924 26 C -0.136 4.136 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.394 0.606 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.251 0.749 43 H 0.041 0.959 44 H 0.021 0.979 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -4.779 -16.168 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.210 4.210 4 C -0.089 4.089 5 H 0.098 0.902 6 C -0.210 4.210 7 C -0.180 4.180 8 C 0.297 3.703 9 O -0.415 6.415 10 N -0.365 5.365 11 C 0.015 3.985 12 H 0.105 0.895 13 C 0.048 3.952 14 N -0.333 5.333 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.014 3.986 24 C -0.134 4.134 25 H 0.094 0.906 26 C -0.194 4.194 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.228 0.772 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.152 -4.864 -15.427 17.306 hybrid contribution 0.730 0.863 0.407 1.201 sum -5.422 -4.001 -15.020 16.462 Atomic orbital electron populations 1.21881 0.95314 1.01836 1.01507 1.21163 0.95813 0.96069 0.98014 1.21940 1.01257 0.96068 1.01715 1.20916 0.92730 0.97089 0.98159 0.90237 1.21996 1.00670 0.95943 1.02442 1.21827 0.97587 1.02517 0.96027 1.20581 0.82376 0.78700 0.88610 1.90659 1.55015 1.48840 1.47001 1.45970 1.06777 1.63336 1.20447 1.22463 0.93949 0.97101 0.84968 0.89509 1.21469 0.89249 0.93606 0.90900 1.44427 1.25930 1.22792 1.40163 1.19103 1.06150 1.01795 1.08745 0.90299 1.24825 0.97554 0.98197 0.99866 1.69992 1.19412 1.23721 1.43507 0.86055 0.78198 0.80021 0.81554 1.20494 1.21800 1.21742 1.21583 0.96736 0.89966 0.90319 1.22612 0.96209 0.95785 0.98809 0.90568 1.21684 1.01262 0.95911 1.00523 0.93075 0.92372 0.92627 0.91446 0.92326 0.92990 0.92459 0.93726 0.90536 0.92890 0.88808 0.89505 0.77225 0.93622 0.93176 0.93815 0.94036 0.96111 0.92682 0.93206 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.84 37.16 0.33 -1.00 16 2 C -0.09 -0.88 2.51 -90.62 -0.23 -1.10 16 3 C -0.15 -1.41 8.85 37.16 0.33 -1.08 16 4 C -0.07 -0.83 1.62 -90.62 -0.15 -0.98 16 5 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 6 C -0.15 -1.85 8.58 37.16 0.32 -1.53 16 7 C -0.14 -1.65 4.96 -27.89 -0.14 -1.79 16 8 C 0.51 8.36 7.55 -10.98 -0.08 8.27 16 9 O -0.54 -10.94 13.61 5.56 0.08 -10.87 16 10 N -0.72 -11.45 5.11 -52.03 -0.27 -11.72 16 11 C 0.12 2.32 2.78 -66.09 -0.18 2.14 16 12 H 0.09 1.80 7.42 -51.93 -0.39 1.42 16 13 C 0.17 4.36 5.13 -3.06 -0.02 4.34 16 14 N -0.61 -15.73 3.39 -170.06 -0.58 -16.31 16 15 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -27.78 10.31 55.49 0.57 -27.21 16 19 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.14 2.89 6.70 -2.52 -0.02 2.88 16 24 C -0.11 -1.92 3.27 -88.46 -0.29 -2.21 16 25 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 26 C -0.14 -1.84 9.30 37.16 0.35 -1.49 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 32 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 36 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 37 H 0.09 1.02 6.17 -51.93 -0.32 0.70 16 38 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.39 5.16 8.56 -40.82 -0.35 4.81 16 40 H 0.05 1.34 7.53 -51.93 -0.39 0.95 16 41 H 0.05 1.38 7.24 -51.93 -0.38 1.00 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.02 0.43 8.04 -51.93 -0.42 0.02 16 45 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -32.58 360.88 -8.38 -40.96 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.57 Total: 2.81 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.03 Total: -0.53 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.27 Total: -55.24 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.58 -8.38 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206545088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.975 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds