Wall clock time and date at job start Tue Mar 31 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47588 * 2 1 4 4 C 1.53000 * 109.46825 * 119.99977 * 2 1 3 5 5 C 1.53002 * 109.47192 * 299.99565 * 4 2 1 6 6 C 1.53009 * 109.47285 * 179.97438 * 4 2 1 7 7 C 1.50703 * 109.47646 * 59.99575 * 4 2 1 8 8 O 1.21283 * 119.99253 * 0.02562 * 7 4 2 9 9 N 1.34770 * 120.00432 * 179.97438 * 7 4 2 10 10 C 1.46497 * 120.00311 * 180.02562 * 9 7 4 11 11 H 1.09002 * 110.91338 * 37.45134 * 10 9 7 12 12 C 1.54908 * 111.00763 * 273.55204 * 10 9 7 13 13 N 1.47414 * 104.83427 * 204.91328 * 12 10 9 14 14 C 1.36941 * 125.65304 * 204.08670 * 13 12 10 15 15 H 1.08008 * 119.99381 * 6.65072 * 14 13 12 16 16 C 1.38812 * 120.00565 * 186.64665 * 14 13 12 17 17 N 1.31618 * 119.99440 * 7.38012 * 16 14 13 18 18 Si 1.86793 * 120.00104 * 187.37813 * 16 14 13 19 19 H 1.48507 * 109.47081 * 84.99136 * 18 16 14 20 20 H 1.48502 * 109.47308 * 324.99111 * 18 16 14 21 21 H 1.48499 * 109.47100 * 204.98882 * 18 16 14 22 22 C 1.47021 * 108.70498 * 24.35841 * 13 12 10 23 23 C 1.54340 * 107.26384 * 358.57942 * 22 13 12 24 24 H 1.09001 * 110.50937 * 96.45359 * 23 22 13 25 25 C 1.52994 * 110.85204 * 219.67551 * 23 22 13 26 26 H 1.08994 * 109.46584 * 60.00010 * 1 2 3 27 27 H 1.08998 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46759 * 300.00344 * 1 2 3 29 29 H 1.09000 * 109.46953 * 239.99230 * 2 1 3 30 30 H 1.08992 * 109.47171 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46495 * 299.99789 * 3 2 1 32 32 H 1.09003 * 109.47141 * 59.99395 * 3 2 1 33 33 H 1.09001 * 109.47614 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47219 * 300.00636 * 5 4 2 35 35 H 1.09002 * 109.46795 * 60.00338 * 5 4 2 36 36 H 1.09003 * 109.46305 * 300.00021 * 6 4 2 37 37 H 1.08998 * 109.46804 * 59.99561 * 6 4 2 38 38 H 1.08994 * 109.47044 * 180.02562 * 6 4 2 39 39 H 0.97003 * 119.99742 * 0.02562 * 9 7 4 40 40 H 1.09003 * 110.36417 * 86.07258 * 12 10 9 41 41 H 1.09002 * 110.36545 * 323.75625 * 12 10 9 42 42 H 0.97004 * 119.99432 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.88851 * 118.12853 * 22 13 12 44 44 H 1.09007 * 109.88284 * 239.29575 * 22 13 12 45 45 H 1.09002 * 109.47181 * 173.69328 * 25 23 22 46 46 H 1.09005 * 109.47585 * 293.69437 * 25 23 22 47 47 H 1.09005 * 109.47215 * 53.69266 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5300 0.0001 2.4985 6 6 3.5700 -0.7219 1.2491 7 6 1.5375 -2.1421 1.2494 8 8 0.8406 -2.5388 0.3395 9 7 1.8635 -2.9720 2.2600 10 6 1.3755 -4.3534 2.2598 11 1 1.3703 -4.7641 1.2501 12 6 -0.0302 -4.4459 2.9041 13 7 -0.1312 -5.8333 3.3919 14 6 -1.2957 -6.5217 3.6048 15 1 -2.2405 -6.0881 3.3118 16 6 -1.2618 -7.7768 4.1969 17 7 -0.1323 -8.2436 4.6852 18 14 -2.8192 -8.8028 4.3007 19 1 -2.9978 -9.5609 3.0363 20 1 -3.9871 -7.9101 4.5118 21 1 -2.7110 -9.7533 5.4366 22 6 1.2252 -6.3534 3.6183 23 6 2.2157 -5.2401 3.2165 24 1 2.5286 -4.6727 4.0930 25 6 3.4269 -5.8257 2.4880 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5140 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.8929 -0.5140 3.3886 34 1 1.8933 1.0277 2.4984 35 1 0.4400 0.0001 2.4985 36 1 3.9329 -1.2360 0.3590 37 1 3.9337 0.3056 1.2488 38 1 3.9332 -1.2361 2.1388 39 1 2.4212 -2.6548 2.9875 40 1 -0.8021 -4.2480 2.1603 41 1 -0.1137 -3.7447 3.7345 42 1 -0.1087 -9.1205 5.0994 43 1 1.3548 -6.6055 4.6708 44 1 1.3917 -7.2359 3.0004 45 1 4.0545 -5.0153 2.1170 46 1 4.0018 -6.4439 3.1776 47 1 3.0875 -6.4351 1.6504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207138807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:36 Heat of formation + Delta-G solvation = -32.211033 kcal Electronic energy + Delta-G solvation = -23814.082185 eV Core-core repulsion = 20610.851295 eV Total energy + Delta-G solvation = -3203.230890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42846 -38.03506 -36.44171 -34.12616 -32.58826 -31.15129 -30.72187 -28.03326 -27.35332 -26.77833 -25.73234 -24.20095 -23.37352 -21.20714 -20.07370 -19.79955 -18.42126 -17.03341 -16.49202 -16.22497 -15.17386 -14.84829 -14.55724 -14.43243 -14.11972 -13.84724 -13.24439 -13.14543 -13.00582 -12.96648 -12.47398 -12.30197 -12.20831 -12.12019 -11.99608 -11.72049 -11.59950 -11.39899 -11.26967 -11.04852 -10.91429 -10.80771 -10.61061 -10.53966 -10.47232 -10.18058 -10.02416 -9.79762 -9.64025 -9.19704 -8.67753 -8.54781 -6.80401 -5.68760 -3.04134 2.88339 3.39919 3.43300 3.48146 3.49730 4.47919 4.52418 4.66175 4.71013 5.05026 5.14257 5.17919 5.22670 5.37409 5.40872 5.43859 5.54044 5.55789 5.60946 5.63762 5.67991 5.78028 5.79109 5.82182 5.85670 5.93892 5.97697 6.07816 6.09112 6.14976 6.17977 6.38286 6.38320 6.44569 6.56174 6.59995 6.70683 6.75546 7.05816 7.49183 7.65520 7.77404 7.85438 8.27389 8.52212 9.23093 9.83738 10.49302 11.41512 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026687 B = 0.004112 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.959962 B = 6807.425883 C = 7456.905360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.069 4.069 3 C -0.150 4.150 4 C -0.078 4.078 5 C -0.145 4.145 6 C -0.142 4.142 7 C 0.520 3.480 8 O -0.535 6.535 9 N -0.714 5.714 10 C 0.133 3.867 11 H 0.092 0.908 12 C 0.129 3.871 13 N -0.603 5.603 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.282 1.282 21 H -0.291 1.291 22 C 0.181 3.819 23 C -0.124 4.124 24 H 0.069 0.931 25 C -0.133 4.133 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.395 0.605 40 H 0.042 0.958 41 H 0.018 0.982 42 H 0.252 0.748 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.477 17.238 -5.161 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.088 4.088 3 C -0.208 4.208 4 C -0.081 4.081 5 C -0.202 4.202 6 C -0.199 4.199 7 C 0.306 3.694 8 O -0.412 6.412 9 N -0.364 5.364 10 C 0.028 3.972 11 H 0.110 0.890 12 C 0.002 3.998 13 N -0.329 5.329 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.056 3.944 23 C -0.144 4.144 24 H 0.087 0.913 25 C -0.191 4.191 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.229 0.771 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.896 16.722 -5.718 19.785 hybrid contribution -0.508 -0.463 0.516 0.860 sum 8.388 16.258 -5.201 19.020 Atomic orbital electron populations 1.22135 0.94683 1.04366 1.00681 1.20863 0.96645 0.95014 0.96263 1.21987 1.00881 0.96074 1.01820 1.20823 0.96809 0.92562 0.97947 1.21967 1.02165 1.00537 0.95522 1.21913 0.92883 1.02711 1.02428 1.20468 0.80018 0.87083 0.81810 1.90635 1.37581 1.76872 1.36070 1.46022 1.53081 1.12505 1.24824 1.22320 0.95055 0.79630 1.00165 0.88975 1.21816 0.94198 0.88202 0.95580 1.44378 1.02523 1.08693 1.77317 1.19062 0.84890 0.98347 1.33223 0.90479 1.24793 0.97316 0.98113 1.00186 1.69939 1.24472 1.18863 1.43610 0.86133 0.82295 0.80136 0.77194 1.21539 1.20723 1.21721 1.21268 0.81357 0.91199 1.00599 1.22739 0.96208 0.98462 0.96947 0.91251 1.21682 0.97092 1.00048 1.00283 0.93365 0.89630 0.93225 0.90808 0.92554 0.92721 0.92392 0.92236 0.91339 0.91598 0.92147 0.91285 0.92170 0.77099 0.93921 0.96453 0.93769 0.92066 0.94687 0.93669 0.92602 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.52 37.16 0.32 -1.63 16 2 C -0.07 -0.74 1.92 -90.62 -0.17 -0.92 16 3 C -0.15 -1.22 8.49 37.16 0.32 -0.91 16 4 C -0.08 -0.83 0.43 -155.65 -0.07 -0.90 16 5 C -0.14 -1.34 7.67 37.16 0.28 -1.06 16 6 C -0.14 -1.22 8.02 37.16 0.30 -0.92 16 7 C 0.52 7.63 6.18 -10.99 -0.07 7.56 16 8 O -0.53 -9.91 13.40 5.55 0.07 -9.84 16 9 N -0.71 -10.23 5.01 -51.73 -0.26 -10.49 16 10 C 0.13 2.43 2.77 -65.79 -0.18 2.25 16 11 H 0.09 1.87 7.64 -51.93 -0.40 1.47 16 12 C 0.13 2.85 6.92 -2.54 -0.02 2.83 16 13 N -0.60 -15.76 3.39 -170.06 -0.58 -16.34 16 14 C -0.23 -6.49 10.26 -15.06 -0.15 -6.65 16 15 H 0.08 2.16 7.84 -52.48 -0.41 1.74 16 16 C -0.01 -0.22 5.45 -17.43 -0.09 -0.32 16 17 N -0.92 -27.14 10.48 55.49 0.58 -26.56 16 18 Si 0.91 22.47 29.56 -169.99 -5.02 17.45 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 C 0.18 4.34 5.03 -3.06 -0.02 4.33 16 23 C -0.12 -2.22 3.16 -88.78 -0.28 -2.50 16 24 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 25 C -0.13 -2.05 9.16 37.15 0.34 -1.71 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.31 5.51 -51.93 -0.29 1.02 16 28 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 33 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 34 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 35 H 0.07 0.69 6.43 -51.93 -0.33 0.35 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 38 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 39 H 0.39 4.61 7.35 -40.82 -0.30 4.31 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.06 1.64 6.99 -51.93 -0.36 1.27 16 44 H 0.03 0.92 7.54 -51.93 -0.39 0.53 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -31.68 353.19 -7.67 -39.35 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.29 Total: 1.67 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 0.50 Total: -0.55 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.26 Total: -53.39 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.68 -7.67 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207138807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.139 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds