Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46842 * 2 1 4 4 C 1.52993 * 109.47076 * 120.00266 * 2 1 3 5 5 C 1.52992 * 109.47482 * 64.99860 * 4 2 1 6 6 C 1.53001 * 109.47633 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47494 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99669 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00191 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00030 * 180.02562 * 9 7 6 11 11 H 1.08995 * 110.88676 * 37.42987 * 10 9 7 12 12 C 1.54913 * 111.00373 * 273.54696 * 10 9 7 13 13 N 1.47422 * 104.83247 * 204.87955 * 12 10 9 14 14 C 1.36932 * 125.64904 * 204.08989 * 13 12 10 15 15 H 1.08001 * 120.00172 * 168.15896 * 14 13 12 16 16 C 1.38810 * 119.99990 * 348.16681 * 14 13 12 17 17 N 1.31624 * 119.99867 * 326.24876 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 145.98140 * 16 14 13 19 19 H 1.48506 * 109.47282 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47535 * 119.99869 * 18 16 14 21 21 H 1.48503 * 109.47098 * 239.99494 * 18 16 14 22 22 C 1.47024 * 108.70201 * 24.35686 * 13 12 10 23 23 C 1.54334 * 107.26646 * 358.58505 * 22 13 12 24 24 H 1.09004 * 110.66854 * 96.52150 * 23 22 13 25 25 C 1.52995 * 110.85086 * 219.67074 * 23 22 13 26 26 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47253 * 299.99712 * 1 2 3 28 28 H 1.08996 * 109.47406 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.46766 * 240.00081 * 2 1 3 30 30 H 1.09004 * 109.46588 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47190 * 300.00218 * 3 2 1 32 32 H 1.09001 * 109.46961 * 60.00109 * 3 2 1 33 33 H 1.09006 * 109.47463 * 304.99496 * 4 2 1 34 34 H 1.09001 * 109.47289 * 185.00084 * 4 2 1 35 35 H 1.09008 * 109.47400 * 59.99813 * 5 4 2 36 36 H 1.08997 * 109.47481 * 300.00154 * 5 4 2 37 37 H 1.08998 * 109.46662 * 59.99557 * 6 5 4 38 38 H 1.08997 * 109.46928 * 300.00633 * 6 5 4 39 39 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 40 40 H 1.08998 * 110.36702 * 86.04149 * 12 10 9 41 41 H 1.08997 * 110.45893 * 323.76573 * 12 10 9 42 42 H 0.96994 * 119.99575 * 353.97716 * 17 16 14 43 43 H 1.09007 * 109.88319 * 118.13184 * 22 13 12 44 44 H 1.09002 * 109.88170 * 239.29426 * 22 13 12 45 45 H 1.09000 * 109.47522 * 173.69225 * 25 23 22 46 46 H 1.09001 * 109.47262 * 293.69322 * 25 23 22 47 47 H 1.09001 * 109.47218 * 53.69162 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1458 -2.9169 2.4368 7 6 1.7466 -4.3688 2.3768 8 8 1.1162 -4.7856 1.4282 9 7 2.0909 -5.2043 3.3766 10 6 1.7033 -6.6159 3.3180 11 1 1.7670 -6.9943 2.2978 12 6 0.2835 -6.8265 3.9007 13 7 0.2624 -8.2321 4.3445 14 6 -0.8576 -9.0066 4.4894 15 1 -0.7620 -10.0726 4.6339 16 6 -2.1157 -8.4215 4.4504 17 7 -2.2921 -7.2076 4.9277 18 14 -3.5570 -9.3540 3.7138 19 1 -3.0971 -10.6859 3.2446 20 1 -4.6121 -9.5288 4.7439 21 1 -4.1075 -8.5885 2.5665 22 6 1.6425 -8.6628 4.6119 23 6 2.5662 -7.4710 4.2832 24 1 2.8059 -6.9095 5.1862 25 6 3.8438 -7.9474 3.5892 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6055 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 1.7116 -2.4574 3.3247 38 1 3.2321 -2.8399 2.4823 39 1 2.5955 -4.8710 4.1352 40 1 -0.4707 -6.6601 3.1316 41 1 0.1158 -6.1592 4.7461 42 1 -1.5656 -6.7560 5.3848 43 1 1.7482 -8.9379 5.6614 44 1 1.8955 -9.5118 3.9768 45 1 4.4262 -7.0840 3.2676 46 1 4.4336 -8.5450 4.2842 47 1 3.5818 -8.5526 2.7214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208810078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = -51.504130 kcal Electronic energy + Delta-G solvation = -22701.025752 eV Core-core repulsion = 19496.958251 eV Total energy + Delta-G solvation = -3204.067502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.69951 -37.88140 -36.98038 -34.06146 -32.95313 -32.61614 -30.36890 -28.44458 -27.34584 -26.79737 -25.50019 -23.71339 -22.22492 -20.50140 -20.16860 -20.13392 -19.42865 -17.49619 -16.72497 -16.00648 -15.89970 -15.04021 -14.57969 -14.42562 -14.02215 -13.80320 -13.63044 -13.47943 -13.14527 -13.04642 -12.86244 -12.47947 -12.39859 -12.17629 -11.87498 -11.74771 -11.69330 -11.48351 -11.09677 -10.83390 -10.78674 -10.72874 -10.64711 -10.60960 -10.51420 -10.39561 -10.05571 -9.97041 -9.64060 -9.49494 -8.61282 -8.28569 -6.93199 -6.11473 -3.04738 2.93636 3.42638 3.56764 3.61892 3.74274 4.56913 4.64185 4.70216 4.72282 4.89729 4.99128 5.07316 5.16915 5.21528 5.29359 5.33443 5.40668 5.42833 5.48174 5.59225 5.61581 5.67249 5.70018 5.72895 5.79687 5.82254 5.89416 6.00223 6.03449 6.04550 6.08127 6.10231 6.24636 6.28896 6.31985 6.37548 6.60181 6.67183 6.83484 7.03393 7.13246 7.80252 7.83712 8.50634 8.55728 9.03884 9.85810 10.40338 11.22986 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.003778 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.601276 B = 7409.492571 C = 8780.807468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.139 4.139 7 C 0.508 3.492 8 O -0.537 6.537 9 N -0.719 5.719 10 C 0.130 3.870 11 H 0.092 0.908 12 C 0.142 3.858 13 N -0.601 5.601 14 C -0.345 4.345 15 H 0.068 0.932 16 C -0.021 4.021 17 N -0.907 5.907 18 Si 1.061 2.939 19 H -0.291 1.291 20 H -0.295 1.295 21 H -0.289 1.289 22 C 0.142 3.858 23 C -0.110 4.110 24 H 0.075 0.925 25 C -0.137 4.137 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.395 0.605 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.268 0.732 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.616 13.402 -5.193 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.179 4.179 7 C 0.295 3.705 8 O -0.413 6.413 9 N -0.370 5.370 10 C 0.025 3.975 11 H 0.110 0.890 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.472 4.472 15 H 0.086 0.914 16 C -0.224 4.224 17 N -0.547 5.547 18 Si 0.890 3.110 19 H -0.218 1.218 20 H -0.223 1.223 21 H -0.216 1.216 22 C 0.016 3.984 23 C -0.130 4.130 24 H 0.093 0.907 25 C -0.194 4.194 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.229 0.771 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.466 13.117 -6.284 18.520 hybrid contribution 1.858 -0.004 1.027 2.123 sum 13.324 13.113 -5.258 19.419 Atomic orbital electron populations 1.21916 0.95146 1.02395 1.01454 1.21113 0.96129 0.95861 0.98516 1.21848 1.00721 0.96239 1.01622 1.21671 1.00540 0.95121 0.97884 1.21404 1.02413 0.93784 0.96815 1.21683 1.02565 0.92475 1.01223 1.20696 0.79303 0.88197 0.82347 1.90721 1.39225 1.77923 1.33457 1.45963 1.57618 1.09992 1.23439 1.22347 0.96132 0.79071 0.99954 0.88970 1.21765 0.93234 0.86829 0.96691 1.44483 1.01245 1.09655 1.77502 1.19701 0.84645 0.90652 1.52191 0.91408 1.25670 0.98409 0.98495 0.99777 1.70732 1.34139 1.16167 1.33622 0.83634 0.75534 0.74903 0.76910 1.21766 1.22281 1.21571 1.21357 0.85355 0.94098 0.97628 1.22417 0.95031 0.97639 0.97868 0.90711 1.21733 0.96529 1.00733 1.00449 0.91941 0.92766 0.93015 0.91245 0.92884 0.92879 0.92778 0.91924 0.92117 0.91347 0.90748 0.89087 0.89347 0.77109 0.92590 0.95892 0.92162 0.95804 0.95230 0.93011 0.92675 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.95 37.16 0.33 -1.08 16 2 C -0.10 -0.85 2.92 -90.62 -0.26 -1.11 16 3 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 4 C -0.11 -1.01 4.68 -26.74 -0.13 -1.13 16 5 C -0.11 -1.20 4.26 -26.73 -0.11 -1.31 16 6 C -0.14 -1.53 5.70 -27.88 -0.16 -1.69 16 7 C 0.51 8.11 7.83 -10.99 -0.09 8.02 16 8 O -0.54 -11.11 15.73 5.56 0.09 -11.02 16 9 N -0.72 -10.91 5.23 -51.73 -0.27 -11.18 16 10 C 0.13 2.46 2.77 -65.78 -0.18 2.28 16 11 H 0.09 1.92 7.63 -51.93 -0.40 1.52 16 12 C 0.14 3.47 5.03 -2.53 -0.01 3.46 16 13 N -0.60 -15.79 3.33 -170.06 -0.57 -16.36 16 14 C -0.34 -10.09 9.97 -15.06 -0.15 -10.24 16 15 H 0.07 1.97 8.02 -52.49 -0.42 1.55 16 16 C -0.02 -0.63 4.96 -17.43 -0.09 -0.71 16 17 N -0.91 -28.28 12.86 55.49 0.71 -27.56 16 18 Si 1.06 26.46 30.03 -169.99 -5.10 21.35 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C 0.14 2.98 6.85 -3.06 -0.02 2.96 16 23 C -0.11 -1.82 3.16 -88.78 -0.28 -2.10 16 24 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 25 C -0.14 -1.82 9.16 37.16 0.34 -1.48 16 26 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.84 8.10 -51.92 -0.42 0.42 16 36 H 0.07 0.98 6.52 -51.93 -0.34 0.64 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.40 4.63 8.52 -40.82 -0.35 4.29 16 40 H 0.06 1.60 7.81 -51.93 -0.41 1.20 16 41 H 0.02 0.60 7.02 -51.93 -0.36 0.23 16 42 H 0.27 8.37 6.43 -40.82 -0.26 8.10 16 43 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 44 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -34.21 370.21 -8.85 -43.07 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.83 Total: 1.00 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.47 Total: -4.87 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.12 Total: -55.11 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.10 Total: 21.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.21 -8.85 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208810078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.435 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds