Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46932 * 2 1 4 4 O 1.20760 * 120.00111 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99890 * 179.72583 * 3 2 1 6 6 C 1.53001 * 109.47343 * 300.27205 * 5 3 2 7 7 C 1.53005 * 109.47598 * 60.26890 * 5 3 2 8 8 C 1.53006 * 109.47435 * 180.27329 * 5 3 2 9 9 N 1.46894 * 109.47297 * 174.32330 * 8 5 3 10 10 C 1.46957 * 110.99578 * 210.43061 * 9 8 5 11 11 C 1.53056 * 109.36282 * 176.81056 * 10 9 8 12 12 N 1.46959 * 109.36603 * 58.39852 * 11 10 9 13 13 C 1.46900 * 110.99928 * 176.81062 * 12 11 10 14 14 C 1.50698 * 109.47201 * 293.80260 * 13 12 11 15 15 H 1.08007 * 120.00260 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00049 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00377 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00004 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47300 * 90.00175 * 18 16 14 20 20 H 1.48496 * 109.47293 * 210.00340 * 18 16 14 21 21 H 1.48507 * 109.47216 * 330.00316 * 18 16 14 22 22 C 1.46948 * 110.87966 * 300.68333 * 12 11 10 23 23 C 1.46956 * 111.00455 * 86.63251 * 9 8 5 24 24 H 1.09004 * 109.47039 * 300.00127 * 1 2 3 25 25 H 1.08998 * 109.46799 * 60.00316 * 1 2 3 26 26 H 1.09000 * 109.46834 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47369 * 239.99539 * 2 1 3 28 28 H 1.09008 * 109.46861 * 119.99524 * 2 1 3 29 29 H 1.08997 * 109.47387 * 64.78670 * 6 5 3 30 30 H 1.08998 * 109.47839 * 184.79182 * 6 5 3 31 31 H 1.09004 * 109.46799 * 304.79082 * 6 5 3 32 32 H 1.09001 * 109.46784 * 76.47830 * 7 5 3 33 33 H 1.08998 * 109.47329 * 196.47868 * 7 5 3 34 34 H 1.08995 * 109.46993 * 316.48833 * 7 5 3 35 35 H 1.09001 * 109.46638 * 294.32361 * 8 5 3 36 36 H 1.08994 * 109.46708 * 54.31646 * 8 5 3 37 37 H 1.08997 * 109.49029 * 296.77631 * 10 9 8 38 38 H 1.08998 * 109.49401 * 56.84754 * 10 9 8 39 39 H 1.08999 * 109.48841 * 298.43137 * 11 10 9 40 40 H 1.09002 * 109.49033 * 178.36636 * 11 10 9 41 41 H 1.08992 * 109.47302 * 53.80240 * 13 12 11 42 42 H 1.09002 * 109.47044 * 173.80249 * 13 12 11 43 43 H 0.96996 * 120.00552 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.49292 * 299.34930 * 22 12 11 45 45 H 1.09003 * 109.50674 * 179.30046 * 22 12 11 46 46 H 1.09002 * 109.48442 * 303.15424 * 23 9 8 47 47 H 1.08999 * 109.48705 * 63.21405 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5139 1.6962 0.0062 6 6 4.1427 1.0765 1.2559 7 6 4.1518 1.0841 -1.2425 8 6 3.7518 3.2077 0.0118 9 7 5.1888 3.4767 0.1548 10 6 5.4193 4.7446 0.8612 11 6 6.9232 4.9487 1.0597 12 7 7.5918 4.9490 -0.2489 13 6 9.0289 5.2181 -0.1058 14 6 9.2289 6.6250 0.3958 15 1 8.3741 7.2564 0.5885 16 6 10.5034 7.1067 0.6077 17 7 10.6780 8.3346 1.0449 18 14 11.9820 6.0151 0.2737 19 1 12.4180 6.1897 -1.1351 20 1 13.0916 6.3920 1.1856 21 1 11.6117 4.5956 0.5049 22 6 7.3612 3.6812 -0.9552 23 6 5.8574 3.4771 -1.1538 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.0479 -0.0084 1.2104 30 1 5.1973 1.3474 1.3046 31 1 3.6305 1.4490 2.1431 32 1 3.9318 1.7105 -2.1070 33 1 5.2313 1.0205 -1.1052 34 1 3.7467 0.0854 -1.4051 35 1 3.3935 3.6352 -0.9247 36 1 3.2131 3.6571 0.8459 37 1 5.0153 5.5678 0.2721 38 1 4.9252 4.7150 1.8323 39 1 7.3223 4.1399 1.6718 40 1 7.0981 5.9024 1.5577 41 1 9.4613 4.5141 0.6050 42 1 9.5180 5.1043 -1.0732 43 1 11.5746 8.6734 1.1943 44 1 7.7653 2.8579 -0.3661 45 1 7.8556 3.7104 -1.9263 46 1 5.6825 2.5234 -1.6518 47 1 5.4583 4.2859 -1.7658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208915902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = -30.252517 kcal Electronic energy + Delta-G solvation = -23310.317854 eV Core-core repulsion = 20107.171892 eV Total energy + Delta-G solvation = -3203.145963 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47334 -38.75597 -36.26419 -34.09273 -32.93833 -32.23193 -30.57623 -28.77322 -27.55056 -26.36891 -25.48854 -23.89124 -23.01643 -21.46961 -20.95448 -19.23496 -18.53314 -16.79158 -16.54385 -15.82378 -15.61442 -15.34359 -14.96592 -14.46951 -14.38663 -14.06473 -13.90837 -13.54449 -13.36767 -13.20462 -12.87831 -12.61138 -12.52918 -12.34996 -12.23899 -12.02469 -11.76128 -11.67884 -11.47108 -11.33625 -11.04485 -11.02094 -10.87686 -10.75447 -10.51780 -10.34537 -10.05960 -9.82217 -9.47896 -9.23718 -8.56559 -8.13984 -7.34376 -6.04827 -4.02154 1.78731 3.28592 3.36026 3.38151 3.60373 4.24311 4.42326 4.49752 4.63724 4.69894 4.79167 4.83067 4.89359 5.11728 5.27353 5.28996 5.34888 5.37856 5.45629 5.49730 5.55137 5.59350 5.60316 5.69240 5.74448 5.77912 5.81953 5.85318 5.89023 5.92486 5.99592 6.06246 6.19659 6.29725 6.33918 6.52780 6.65417 6.85161 6.98336 7.18994 7.28633 7.35309 7.60790 7.92879 8.07077 8.66820 9.03373 9.57004 11.08303 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043166 B = 0.003256 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.502586 B = 8598.123060 C = 8852.443317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.176 4.176 3 C 0.365 3.635 4 O -0.453 6.453 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.141 4.141 8 C 0.072 3.928 9 N -0.534 5.534 10 C 0.059 3.941 11 C 0.068 3.932 12 N -0.530 5.530 13 C 0.163 3.837 14 C -0.509 4.509 15 H 0.080 0.920 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.054 3.946 23 C 0.046 3.954 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.091 0.909 41 H -0.011 1.011 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 -19.283 -2.478 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.213 4.213 3 C 0.239 3.761 4 O -0.326 6.326 5 C -0.105 4.105 6 C -0.185 4.185 7 C -0.198 4.198 8 C -0.057 4.057 9 N -0.259 5.259 10 C -0.069 4.069 11 C -0.060 4.060 12 N -0.255 5.255 13 C 0.037 3.963 14 C -0.547 4.547 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.075 4.075 23 C -0.082 4.082 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.006 0.994 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.353 -18.635 -2.424 24.911 hybrid contribution 0.997 -0.493 -0.195 1.129 sum -15.357 -19.127 -2.619 24.669 Atomic orbital electron populations 1.21599 0.93941 1.01662 1.02995 1.22070 0.98035 0.96539 1.04682 1.24729 0.90764 0.90802 0.69761 1.90381 1.59022 1.47853 1.35344 1.21126 0.93083 0.97668 0.98609 1.21706 1.03162 0.99027 0.94556 1.22059 1.02178 1.00024 0.95549 1.21916 0.89026 0.93285 1.01434 1.62056 1.09715 1.34183 1.19904 1.22268 0.97582 0.89321 0.97735 1.22018 0.91243 1.01708 0.91039 1.62093 1.14475 1.29781 1.19125 1.20142 0.83277 0.97299 0.95597 1.21036 0.93944 0.96372 1.43369 0.90208 1.24903 0.98703 0.94880 0.94878 1.69890 1.22250 1.15493 1.46355 0.86858 0.82901 0.81501 0.78469 1.20191 1.21229 1.19262 1.22109 0.94499 0.91882 0.98968 1.22554 0.94679 1.00956 0.89966 0.92204 0.92240 0.92169 0.88439 0.88344 0.92849 0.89454 0.93015 0.92383 0.90109 0.92404 0.93919 0.90844 0.94187 0.91052 0.95307 0.89080 0.99358 0.95911 0.92676 0.95196 0.91184 0.89870 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.16 0.34 -0.70 16 2 C -0.18 -1.20 5.71 -27.88 -0.16 -1.36 16 3 C 0.36 3.63 5.97 -29.04 -0.17 3.46 16 4 O -0.45 -6.05 15.53 6.00 0.09 -5.96 16 5 C -0.10 -1.01 0.70 -155.65 -0.11 -1.12 16 6 C -0.13 -1.15 7.95 37.16 0.30 -0.86 16 7 C -0.14 -1.18 6.99 37.16 0.26 -0.92 16 8 C 0.07 0.89 3.58 -3.82 -0.01 0.88 16 9 N -0.53 -7.41 3.46 -234.47 -0.81 -8.22 16 10 C 0.06 0.93 5.49 -3.76 -0.02 0.91 16 11 C 0.07 1.32 5.43 -3.76 -0.02 1.30 16 12 N -0.53 -11.16 4.70 -235.91 -1.11 -12.27 16 13 C 0.16 3.98 3.79 -4.98 -0.02 3.96 16 14 C -0.51 -14.49 9.03 -34.44 -0.31 -14.80 16 15 H 0.08 2.47 7.38 -52.48 -0.39 2.09 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 C 0.05 0.93 5.61 -3.77 -0.02 0.91 16 23 C 0.05 0.66 5.12 -3.77 -0.02 0.64 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.10 0.51 6.99 -51.93 -0.36 0.15 16 28 H 0.10 0.53 7.49 -51.92 -0.39 0.14 16 29 H 0.05 0.37 7.53 -51.93 -0.39 -0.02 16 30 H 0.09 0.94 7.29 -51.93 -0.38 0.57 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 7.53 -51.93 -0.39 0.12 16 33 H 0.08 0.72 6.43 -51.93 -0.33 0.38 16 34 H 0.06 0.36 6.59 -51.93 -0.34 0.02 16 35 H 0.04 0.57 7.72 -51.93 -0.40 0.17 16 36 H 0.07 0.97 7.46 -51.93 -0.39 0.58 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.96 6.79 -51.93 -0.35 1.61 16 41 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 42 H 0.02 0.56 7.45 -51.93 -0.39 0.17 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 46 H 0.08 0.97 4.20 -51.93 -0.22 0.75 16 47 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -31.52 353.33 -8.94 -40.46 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.47 Total: -3.48 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.07 Total: -5.83 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -1.15 Total: -47.38 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: 0.09 Total: -5.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.52 -8.94 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208915902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.207 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds