Wall clock time and date at job start Tue Mar 31 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46932 * 2 1 4 4 O 1.20760 * 120.00111 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99890 * 179.72583 * 3 2 1 6 6 C 1.53001 * 109.47343 * 300.27205 * 5 3 2 7 7 C 1.53005 * 109.47598 * 60.26890 * 5 3 2 8 8 C 1.53006 * 109.47435 * 180.27329 * 5 3 2 9 9 N 1.46894 * 109.47297 * 174.32330 * 8 5 3 10 10 C 1.46957 * 110.99578 * 210.43061 * 9 8 5 11 11 C 1.53056 * 109.36282 * 176.81056 * 10 9 8 12 12 N 1.46959 * 109.36603 * 58.39852 * 11 10 9 13 13 C 1.46900 * 110.99928 * 176.81062 * 12 11 10 14 14 C 1.50698 * 109.47201 * 293.80260 * 13 12 11 15 15 H 1.08007 * 120.00260 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00049 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00377 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00004 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47300 * 90.00175 * 18 16 14 20 20 H 1.48496 * 109.47293 * 210.00340 * 18 16 14 21 21 H 1.48507 * 109.47216 * 330.00316 * 18 16 14 22 22 C 1.46948 * 110.87966 * 300.68333 * 12 11 10 23 23 C 1.46956 * 111.00455 * 86.63251 * 9 8 5 24 24 H 1.09004 * 109.47039 * 300.00127 * 1 2 3 25 25 H 1.08998 * 109.46799 * 60.00316 * 1 2 3 26 26 H 1.09000 * 109.46834 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47369 * 239.99539 * 2 1 3 28 28 H 1.09008 * 109.46861 * 119.99524 * 2 1 3 29 29 H 1.08997 * 109.47387 * 64.78670 * 6 5 3 30 30 H 1.08998 * 109.47839 * 184.79182 * 6 5 3 31 31 H 1.09004 * 109.46799 * 304.79082 * 6 5 3 32 32 H 1.09001 * 109.46784 * 76.47830 * 7 5 3 33 33 H 1.08998 * 109.47329 * 196.47868 * 7 5 3 34 34 H 1.08995 * 109.46993 * 316.48833 * 7 5 3 35 35 H 1.09001 * 109.46638 * 294.32361 * 8 5 3 36 36 H 1.08994 * 109.46708 * 54.31646 * 8 5 3 37 37 H 1.08997 * 109.49029 * 296.77631 * 10 9 8 38 38 H 1.08998 * 109.49401 * 56.84754 * 10 9 8 39 39 H 1.08999 * 109.48841 * 298.43137 * 11 10 9 40 40 H 1.09002 * 109.49033 * 178.36636 * 11 10 9 41 41 H 1.08992 * 109.47302 * 53.80240 * 13 12 11 42 42 H 1.09002 * 109.47044 * 173.80249 * 13 12 11 43 43 H 0.96996 * 120.00552 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.49292 * 299.34930 * 22 12 11 45 45 H 1.09003 * 109.50674 * 179.30046 * 22 12 11 46 46 H 1.09002 * 109.48442 * 303.15424 * 23 9 8 47 47 H 1.08999 * 109.48705 * 63.21405 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5139 1.6962 0.0062 6 6 4.1427 1.0765 1.2559 7 6 4.1518 1.0841 -1.2425 8 6 3.7518 3.2077 0.0118 9 7 5.1888 3.4767 0.1548 10 6 5.4193 4.7446 0.8612 11 6 6.9232 4.9487 1.0597 12 7 7.5918 4.9490 -0.2489 13 6 9.0289 5.2181 -0.1058 14 6 9.2289 6.6250 0.3958 15 1 8.3741 7.2564 0.5885 16 6 10.5034 7.1067 0.6077 17 7 10.6780 8.3346 1.0449 18 14 11.9820 6.0151 0.2737 19 1 12.4180 6.1897 -1.1351 20 1 13.0916 6.3920 1.1856 21 1 11.6117 4.5956 0.5049 22 6 7.3612 3.6812 -0.9552 23 6 5.8574 3.4771 -1.1538 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.0479 -0.0084 1.2104 30 1 5.1973 1.3474 1.3046 31 1 3.6305 1.4490 2.1431 32 1 3.9318 1.7105 -2.1070 33 1 5.2313 1.0205 -1.1052 34 1 3.7467 0.0854 -1.4051 35 1 3.3935 3.6352 -0.9247 36 1 3.2131 3.6571 0.8459 37 1 5.0153 5.5678 0.2721 38 1 4.9252 4.7150 1.8323 39 1 7.3223 4.1399 1.6718 40 1 7.0981 5.9024 1.5577 41 1 9.4613 4.5141 0.6050 42 1 9.5180 5.1043 -1.0732 43 1 11.5746 8.6734 1.1943 44 1 7.7653 2.8579 -0.3661 45 1 7.8556 3.7104 -1.9263 46 1 5.6825 2.5234 -1.6518 47 1 5.4583 4.2859 -1.7658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208915902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:01 Heat of formation + Delta-G solvation = -51.655864 kcal Electronic energy + Delta-G solvation = -23311.245973 eV Core-core repulsion = 20107.171892 eV Total energy + Delta-G solvation = -3204.074081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35043 -40.02663 -37.49475 -35.38464 -34.36961 -33.45326 -31.94340 -30.45747 -28.33604 -27.75676 -26.17731 -25.22988 -24.39368 -22.95162 -22.12843 -20.65761 -19.30422 -18.94847 -17.48355 -16.82332 -16.58492 -16.48352 -16.20258 -15.99486 -15.84990 -15.27504 -15.06633 -14.95595 -14.62794 -14.38526 -14.17797 -13.78777 -13.55192 -13.34557 -13.12725 -13.03593 -12.82896 -12.79170 -12.60713 -12.57615 -12.37191 -12.18830 -11.98730 -11.93673 -11.80811 -11.76386 -11.65483 -11.51430 -11.22590 -10.78542 -10.28729 -9.34757 -9.01586 -8.28861 -6.32751 1.04408 1.34882 1.36555 1.47497 2.34329 2.68786 3.03963 3.22361 3.28792 3.69928 3.86018 3.98669 4.06788 4.17868 4.23460 4.24909 4.30957 4.36677 4.46023 4.52580 4.62006 4.63969 4.69446 4.78033 4.85794 4.86128 4.89271 4.96175 4.98917 4.99414 5.04067 5.04804 5.07800 5.10974 5.16523 5.18985 5.32343 5.43904 5.52343 5.57238 5.91753 6.01794 6.10098 6.36998 6.60103 6.66242 6.73337 7.31102 8.87874 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043166 B = 0.003256 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.502586 B = 8598.123060 C = 8852.443317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.171 4.171 3 C 0.367 3.633 4 O -0.497 6.497 5 C -0.101 4.101 6 C -0.123 4.123 7 C -0.142 4.142 8 C 0.074 3.926 9 N -0.525 5.525 10 C 0.069 3.931 11 C 0.075 3.925 12 N -0.550 5.550 13 C 0.174 3.826 14 C -0.518 4.518 15 H 0.034 0.966 16 C 0.006 3.994 17 N -0.949 5.949 18 Si 0.951 3.049 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.250 1.250 22 C 0.053 3.947 23 C 0.053 3.947 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.055 0.945 41 H -0.012 1.012 42 H 0.029 0.971 43 H 0.267 0.733 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.118 0.882 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.933 -23.378 -3.429 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.208 4.208 3 C 0.244 3.756 4 O -0.373 6.373 5 C -0.102 4.102 6 C -0.180 4.180 7 C -0.198 4.198 8 C -0.054 4.054 9 N -0.249 5.249 10 C -0.060 4.060 11 C -0.054 4.054 12 N -0.275 5.275 13 C 0.047 3.953 14 C -0.556 4.556 15 H 0.053 0.947 16 C -0.191 4.191 17 N -0.590 5.590 18 Si 0.774 3.226 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.174 1.174 22 C -0.075 4.075 23 C -0.075 4.075 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.006 0.994 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.136 0.864 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.222 -22.761 -3.384 28.154 hybrid contribution 0.840 0.843 0.122 1.196 sum -15.382 -21.917 -3.262 26.975 Atomic orbital electron populations 1.21616 0.94524 1.02638 1.01594 1.22139 0.97514 0.94266 1.06885 1.25195 0.90374 0.91971 0.68035 1.90386 1.59867 1.49414 1.37587 1.21126 0.93610 0.95402 1.00076 1.21676 1.01803 1.00857 0.93693 1.22071 1.02066 1.01459 0.94231 1.21925 0.87452 0.95741 1.00306 1.62108 1.10831 1.32310 1.19682 1.22102 0.95045 0.90061 0.98744 1.21886 0.93390 0.99807 0.90312 1.62001 1.12510 1.32858 1.20115 1.19891 0.85629 0.94464 0.95303 1.21260 0.92822 0.98069 1.43437 0.94748 1.25884 1.02307 0.96410 0.94484 1.70053 1.23297 1.17780 1.47857 0.85665 0.78215 0.79937 0.78803 1.18910 1.20742 1.17392 1.22233 0.96552 0.89874 0.98812 1.22585 0.92694 1.02269 0.89950 0.93756 0.93625 0.89921 0.85832 0.86082 0.89842 0.90968 0.93731 0.92871 0.90171 0.89419 0.95032 0.92113 0.95829 0.89489 0.95161 0.92635 0.99424 0.95252 0.92412 0.94428 0.90252 0.86410 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.20 71.98 0.66 -1.13 16 2 C -0.17 -1.71 5.71 29.85 0.17 -1.54 16 3 C 0.37 6.54 5.97 29.10 0.17 6.71 16 4 O -0.50 -13.07 15.53 -1.45 -0.02 -13.09 16 5 C -0.10 -1.72 0.70 -52.92 -0.04 -1.75 16 6 C -0.12 -1.87 7.95 71.98 0.57 -1.30 16 7 C -0.14 -1.82 6.99 71.98 0.50 -1.32 16 8 C 0.07 1.78 3.58 86.31 0.31 2.08 16 9 N -0.53 -14.06 3.46 -895.73 -3.10 -17.16 16 10 C 0.07 2.23 5.49 86.31 0.47 2.70 16 11 C 0.07 2.97 5.43 86.31 0.47 3.44 16 12 N -0.55 -23.32 4.70 -900.30 -4.23 -27.55 16 13 C 0.17 8.49 3.79 85.56 0.32 8.81 16 14 C -0.52 -30.51 9.03 25.60 0.23 -30.28 16 15 H 0.03 2.27 7.38 -2.91 -0.02 2.25 16 16 C 0.01 0.37 5.47 84.66 0.46 0.83 16 17 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 18 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 22 C 0.05 1.73 5.61 86.31 0.48 2.21 16 23 C 0.05 1.41 5.12 86.31 0.44 1.85 16 24 H 0.04 0.67 8.10 -2.38 -0.02 0.65 16 25 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.12 0.65 6.99 -2.39 -0.02 0.64 16 28 H 0.12 0.73 7.49 -2.38 -0.02 0.72 16 29 H 0.08 0.78 7.53 -2.39 -0.02 0.76 16 30 H 0.07 1.36 7.29 -2.39 -0.02 1.34 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.76 7.53 -2.39 -0.02 0.74 16 33 H 0.08 1.08 6.43 -2.39 -0.02 1.06 16 34 H 0.09 0.64 6.59 -2.39 -0.02 0.62 16 35 H 0.03 0.83 7.72 -2.39 -0.02 0.81 16 36 H 0.06 1.61 7.46 -2.39 -0.02 1.60 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 2.52 7.98 -2.39 -0.02 2.50 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 2.57 6.79 -2.39 -0.02 2.55 16 41 H -0.01 -0.58 7.18 -2.39 -0.02 -0.60 16 42 H 0.03 1.39 7.45 -2.39 -0.02 1.38 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 46 H 0.12 2.38 4.20 -2.39 -0.01 2.37 16 47 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 Total: -1.00 -71.89 353.33 0.94 -70.95 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.86 Total: 9.18 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.24 Total: -8.69 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -7.03 Total: -104.52 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.02 Total: -13.09 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -71.89 0.94 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208915902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.297 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds