Wall clock time and date at job start Tue Mar 31 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 110.63965 * 2 1 4 4 C 1.54328 * 111.00221 * 236.92333 * 2 1 3 5 5 N 1.47021 * 107.26732 * 219.60186 * 4 2 1 6 6 C 1.36933 * 125.65039 * 178.85061 * 5 4 2 7 7 H 1.07998 * 119.99838 * 347.82500 * 6 5 4 8 8 C 1.38811 * 120.00230 * 167.82543 * 6 5 4 9 9 N 1.31618 * 119.99685 * 326.27039 * 8 6 5 10 10 Si 1.86797 * 120.00192 * 145.99931 * 8 6 5 11 11 H 1.48506 * 109.47202 * 59.99979 * 10 8 6 12 12 H 1.48503 * 109.47177 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47386 * 299.99796 * 10 8 6 14 14 C 1.47425 * 108.70065 * 358.58833 * 5 4 2 15 15 C 1.54909 * 104.83527 * 24.35469 * 14 5 4 16 16 H 1.08994 * 111.00417 * 81.06338 * 15 14 5 17 17 N 1.46495 * 111.00646 * 204.88202 * 15 14 5 18 18 C 1.34778 * 119.99814 * 273.54401 * 17 15 14 19 19 O 1.21287 * 120.00059 * 0.02562 * 18 17 15 20 20 C 1.50705 * 120.00025 * 179.97438 * 18 17 15 21 21 C 1.52998 * 109.47192 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47349 * 179.97438 * 21 20 18 23 23 C 1.53003 * 109.46845 * 59.99942 * 22 21 20 24 24 C 1.53003 * 109.47193 * 179.97438 * 22 21 20 25 25 C 1.52997 * 109.46878 * 299.99947 * 22 21 20 26 26 H 1.09004 * 109.46616 * 296.85913 * 1 2 3 27 27 H 1.08996 * 109.46545 * 56.85511 * 1 2 3 28 28 H 1.09000 * 109.47154 * 176.85540 * 1 2 3 29 29 H 1.09000 * 109.99339 * 100.12375 * 4 2 1 30 30 H 1.09008 * 109.78074 * 338.96171 * 4 2 1 31 31 H 0.96996 * 120.00111 * 353.97910 * 9 8 6 32 32 H 1.08998 * 110.36609 * 143.19796 * 14 5 4 33 33 H 1.09005 * 110.36265 * 265.51489 * 14 5 4 34 34 H 0.96997 * 120.00679 * 93.54475 * 17 15 14 35 35 H 1.09000 * 109.46979 * 300.00091 * 20 18 17 36 36 H 1.08996 * 109.47082 * 60.00043 * 20 18 17 37 37 H 1.09000 * 109.47095 * 300.00345 * 21 20 18 38 38 H 1.09005 * 109.47220 * 59.99661 * 21 20 18 39 39 H 1.09000 * 109.46936 * 60.00050 * 23 22 21 40 40 H 1.08996 * 109.46939 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46865 * 299.99851 * 23 22 21 42 42 H 1.08999 * 109.46803 * 60.00517 * 24 22 21 43 43 H 1.08996 * 109.47099 * 180.02562 * 24 22 21 44 44 H 1.09002 * 109.46910 * 300.00553 * 24 22 21 45 45 H 1.09002 * 109.47457 * 60.00289 * 25 22 21 46 46 H 1.09003 * 109.46732 * 179.97438 * 25 22 21 47 47 H 1.08996 * 109.47124 * 299.99695 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0832 -0.7863 -1.2073 5 7 3.2495 -1.5470 -0.7354 6 6 4.0125 -2.3917 -1.4964 7 1 3.6684 -2.6977 -2.4733 8 6 5.2283 -2.8548 -1.0123 9 7 5.9668 -2.0838 -0.2426 10 14 5.8127 -4.5749 -1.4471 11 1 5.9444 -4.6951 -2.9214 12 1 7.1309 -4.8255 -0.8108 13 1 4.8277 -5.5715 -0.9552 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7934 1.2152 16 1 1.4469 -1.6529 1.4383 17 7 2.2175 0.0719 2.3891 18 6 2.3109 -0.4710 3.6192 19 8 2.2808 -1.6759 3.7541 20 6 2.4539 0.4192 4.8268 21 6 2.5394 -0.4424 6.0882 22 6 2.6852 0.4612 7.3142 23 6 1.4722 1.3887 7.4113 24 6 2.7700 -0.4004 8.5757 25 6 3.9586 1.2990 7.1816 26 1 -0.3633 0.4643 0.9169 27 1 -0.3632 0.5619 -0.8604 28 1 -0.3633 -1.0261 -0.0564 29 1 2.3849 -0.0960 -1.9951 30 1 1.3216 -1.4701 -1.5824 31 1 5.7053 -1.1632 -0.0845 32 1 3.7993 -2.1364 1.2217 33 1 4.1930 -0.4409 0.8030 34 1 2.2419 1.0356 2.2812 35 1 3.3611 1.0161 4.7328 36 1 1.5898 1.0799 4.8955 37 1 1.6324 -1.0397 6.1824 38 1 3.4038 -1.1029 6.0192 39 1 0.5651 0.7918 7.5057 40 1 1.5763 2.0328 8.2844 41 1 1.4114 2.0026 6.5126 42 1 3.6340 -1.0614 8.5067 43 1 2.8735 0.2434 9.4491 44 1 1.8627 -0.9970 8.6698 45 1 3.8977 1.9129 6.2829 46 1 4.0622 1.9431 8.0548 47 1 4.8226 0.6382 7.1124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209618188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:42 Heat of formation + Delta-G solvation = -45.506204 kcal Electronic energy + Delta-G solvation = -23122.604779 eV Core-core repulsion = 19918.797366 eV Total energy + Delta-G solvation = -3203.807412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.79628 -38.22234 -37.29536 -34.05414 -32.79021 -31.19631 -30.36830 -27.88451 -27.47654 -27.43490 -25.51902 -24.68107 -23.19279 -20.63783 -20.16296 -19.51004 -18.67991 -17.49733 -16.84994 -15.99588 -15.55735 -14.71820 -14.58914 -14.41391 -14.28877 -13.74602 -13.57500 -13.44036 -13.08669 -13.01805 -12.78196 -12.60140 -12.44852 -12.04123 -11.91863 -11.83752 -11.75297 -11.49319 -11.23352 -10.84383 -10.70247 -10.66767 -10.66080 -10.59957 -10.59291 -10.39365 -10.05143 -9.93312 -9.62827 -9.48435 -8.60556 -8.29149 -6.93216 -6.11343 -3.04691 2.94559 3.43443 3.54736 3.62023 3.78131 4.58643 4.60265 4.65189 4.67683 4.92312 5.05830 5.12265 5.21242 5.21936 5.30091 5.33489 5.40500 5.45846 5.47701 5.57943 5.61548 5.67590 5.74390 5.75550 5.81886 5.88236 5.89920 5.92955 6.01715 6.04834 6.08766 6.14870 6.24728 6.28105 6.31960 6.33451 6.60369 6.67764 6.83730 7.03847 7.13426 7.80763 7.83641 8.50757 8.56455 9.03769 9.85912 10.40568 11.22972 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.004103 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.250267 B = 6822.614142 C = 7934.537411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.346 4.346 7 H 0.068 0.932 8 C -0.020 4.020 9 N -0.905 5.905 10 Si 1.056 2.944 11 H -0.293 1.293 12 H -0.286 1.286 13 H -0.293 1.293 14 C 0.142 3.858 15 C 0.130 3.870 16 H 0.092 0.908 17 N -0.719 5.719 18 C 0.508 3.492 19 O -0.537 6.537 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.072 4.072 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.395 0.605 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 10.451 13.580 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.093 0.907 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.473 4.473 7 H 0.086 0.914 8 C -0.222 4.222 9 N -0.545 5.545 10 Si 0.885 3.115 11 H -0.220 1.220 12 H -0.211 1.211 13 H -0.221 1.221 14 C 0.015 3.985 15 C 0.025 3.975 16 H 0.110 0.890 17 N -0.370 5.370 18 C 0.295 3.705 19 O -0.414 6.414 20 C -0.183 4.183 21 C -0.131 4.131 22 C -0.072 4.072 23 C -0.201 4.201 24 C -0.198 4.198 25 C -0.203 4.203 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.229 0.771 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.659 8.371 13.868 18.368 hybrid contribution -1.130 1.730 -0.525 2.132 sum -9.788 10.101 13.343 19.387 Atomic orbital electron populations 1.21730 0.94659 1.02005 1.01028 1.22417 0.95487 0.99178 0.95881 0.90731 1.21349 0.90513 0.92991 0.93567 1.44464 1.31827 1.51496 1.05060 1.19664 1.01993 1.23266 1.02425 0.91441 1.25663 0.91928 1.05065 0.99585 1.70792 1.35307 1.07768 1.40629 0.83667 0.75958 0.76416 0.75425 1.22011 1.21120 1.22053 1.21764 0.92187 0.98845 0.85688 1.22346 0.99192 0.92890 0.83089 0.88988 1.45956 1.74846 1.09912 1.06295 1.20722 0.76043 0.89332 0.84451 1.90722 1.49206 1.15271 1.86168 1.21813 1.04068 0.99082 0.93298 1.21387 1.03559 0.96950 0.91156 1.20586 0.95617 0.95598 0.95374 1.21947 0.97450 0.99150 1.01574 1.21852 1.01985 0.99446 0.96521 1.21956 0.97054 0.99706 1.01568 0.93004 0.92681 0.92406 0.95808 0.95255 0.92232 0.92591 0.95897 0.77141 0.88841 0.89099 0.91255 0.90990 0.92658 0.92883 0.92423 0.92504 0.92840 0.92657 0.92356 0.92886 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.17 37.16 0.34 -1.48 16 2 C -0.11 -1.82 3.15 -88.78 -0.28 -2.10 16 3 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 4 C 0.14 2.99 6.85 -3.06 -0.02 2.97 16 5 N -0.60 -15.80 3.33 -170.07 -0.57 -16.37 16 6 C -0.35 -10.15 9.97 -15.06 -0.15 -10.30 16 7 H 0.07 1.96 8.02 -52.49 -0.42 1.54 16 8 C -0.02 -0.59 4.96 -17.43 -0.09 -0.68 16 9 N -0.91 -28.24 12.86 55.49 0.71 -27.52 16 10 Si 1.06 26.35 30.03 -169.99 -5.10 21.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.14 3.48 5.02 -2.53 -0.01 3.47 16 15 C 0.13 2.47 2.76 -65.78 -0.18 2.28 16 16 H 0.09 1.92 7.64 -51.93 -0.40 1.53 16 17 N -0.72 -10.94 5.23 -51.73 -0.27 -11.21 16 18 C 0.51 8.13 7.83 -10.98 -0.09 8.04 16 19 O -0.54 -11.16 15.73 5.55 0.09 -11.07 16 20 C -0.14 -1.59 4.99 -27.88 -0.14 -1.73 16 21 C -0.09 -1.06 3.56 -26.73 -0.10 -1.16 16 22 C -0.07 -0.64 0.80 -154.51 -0.12 -0.77 16 23 C -0.14 -1.12 8.12 37.16 0.30 -0.81 16 24 C -0.14 -1.21 8.47 37.16 0.31 -0.90 16 25 C -0.15 -1.25 8.12 37.16 0.30 -0.95 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.03 0.61 7.78 -51.92 -0.40 0.21 16 31 H 0.27 8.35 6.43 -40.82 -0.26 8.09 16 32 H 0.06 1.60 7.81 -51.93 -0.41 1.20 16 33 H 0.02 0.60 7.02 -51.93 -0.36 0.23 16 34 H 0.40 4.65 8.52 -40.82 -0.35 4.30 16 35 H 0.09 0.93 6.43 -51.93 -0.33 0.60 16 36 H 0.09 0.80 6.43 -51.93 -0.33 0.46 16 37 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -34.26 364.92 -8.19 -42.46 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.64 Total: 1.07 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.10 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.12 Total: -55.10 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.10 Total: 21.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.26 -8.19 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209618188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.050 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds