Wall clock time and date at job start Tue Mar 31 2020 06:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46929 * 2 1 4 4 C 1.53004 * 109.46702 * 119.99532 * 2 1 3 5 5 C 1.53000 * 109.47096 * 65.00264 * 4 2 1 6 6 H 1.08997 * 109.47046 * 305.00049 * 5 4 2 7 7 C 1.53001 * 109.47013 * 64.99400 * 5 4 2 8 8 C 1.50701 * 109.47158 * 184.99539 * 5 4 2 9 9 O 1.21272 * 120.00004 * 0.02562 * 8 5 4 10 10 N 1.34775 * 119.99938 * 179.97438 * 8 5 4 11 11 C 1.46497 * 119.99978 * 180.02562 * 10 8 5 12 12 H 1.08999 * 110.64201 * 31.85995 * 11 10 8 13 13 C 1.54332 * 110.84853 * 268.69290 * 11 10 8 14 14 N 1.47029 * 107.26368 * 219.67300 * 13 11 10 15 15 C 1.36933 * 125.64512 * 178.85299 * 14 13 11 16 16 H 1.08006 * 120.00013 * 189.98651 * 15 14 13 17 17 C 1.38816 * 120.00540 * 9.98300 * 15 14 13 18 18 N 1.31610 * 120.00440 * 194.85994 * 17 15 14 19 19 Si 1.86802 * 119.99394 * 14.85778 * 17 15 14 20 20 H 1.48500 * 109.46621 * 174.71662 * 19 17 15 21 21 H 1.48498 * 109.47265 * 294.71524 * 19 17 15 22 22 H 1.48496 * 109.47327 * 54.71621 * 19 17 15 23 23 C 1.47425 * 108.70443 * 358.58749 * 14 13 11 24 24 C 1.54909 * 104.83093 * 24.35407 * 23 14 13 25 25 H 1.09001 * 111.00501 * 81.06774 * 24 23 14 26 26 C 1.53004 * 111.00346 * 204.91668 * 24 23 14 27 27 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47359 * 300.00282 * 1 2 3 29 29 H 1.08999 * 109.47186 * 59.99957 * 1 2 3 30 30 H 1.08994 * 109.46753 * 239.99567 * 2 1 3 31 31 H 1.09004 * 109.47205 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47531 * 299.99717 * 3 2 1 33 33 H 1.08998 * 109.47818 * 59.99677 * 3 2 1 34 34 H 1.08996 * 109.47484 * 304.99698 * 4 2 1 35 35 H 1.09004 * 109.46787 * 184.99708 * 4 2 1 36 36 H 1.09006 * 109.47452 * 60.00329 * 7 5 4 37 37 H 1.09000 * 109.47288 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47469 * 299.99652 * 7 5 4 39 39 H 0.97002 * 119.99791 * 0.02562 * 10 8 5 40 40 H 1.08997 * 109.99246 * 100.19912 * 13 11 10 41 41 H 1.08994 * 109.78153 * 339.02776 * 13 11 10 42 42 H 0.97004 * 120.00186 * 355.02219 * 18 17 15 43 43 H 1.08996 * 110.36595 * 143.19759 * 23 14 13 44 44 H 1.09006 * 110.36360 * 265.41023 * 23 14 13 45 45 H 1.08997 * 109.47141 * 58.55157 * 26 24 23 46 46 H 1.08996 * 109.46792 * 178.54476 * 26 24 23 47 47 H 1.08995 * 109.47069 * 298.54701 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1881 6 1 0.5563 -2.2706 1.0528 7 6 2.3448 -2.8707 0.0128 8 6 2.0293 -2.8783 2.4724 9 8 2.5792 -2.2479 3.3504 10 7 1.7696 -4.1894 2.6457 11 6 2.1522 -4.8531 3.8944 12 1 2.0966 -4.1577 4.7319 13 6 3.5669 -5.4596 3.7829 14 7 3.5390 -6.7608 4.4669 15 6 4.5926 -7.6288 4.5741 16 1 4.4332 -8.6274 4.9537 17 6 5.8656 -7.2256 4.1948 18 7 6.8138 -8.1207 4.0167 19 14 6.2327 -5.4122 3.9372 20 1 7.6815 -5.2345 3.6641 21 1 5.4459 -4.9069 2.7836 22 1 5.8626 -4.6537 5.1590 23 6 2.1906 -6.9733 5.0238 24 6 1.2587 -6.0951 4.1520 25 1 1.0096 -6.5979 3.2175 26 6 -0.0078 -5.7100 4.9194 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6443 1.2953 36 1 3.4238 -2.7955 0.1481 37 1 2.0568 -3.9211 -0.0305 38 1 2.0597 -2.3768 -0.9161 39 1 1.3294 -4.6935 1.9436 40 1 4.2926 -4.8036 4.2637 41 1 3.8274 -5.5980 2.7337 42 1 6.6441 -9.0540 4.2198 43 1 1.9079 -8.0229 4.9429 44 1 2.1547 -6.6506 6.0643 45 1 0.2666 -5.1716 5.8265 46 1 -0.6321 -5.0726 4.2934 47 1 -0.5600 -6.6114 5.1849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209808454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:17 Heat of formation + Delta-G solvation = -33.592347 kcal Electronic energy + Delta-G solvation = -23491.856390 eV Core-core repulsion = 20288.565602 eV Total energy + Delta-G solvation = -3203.290789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.08799 -38.20176 -36.82848 -34.13872 -33.08293 -32.33684 -31.01325 -28.08589 -27.39789 -26.75970 -26.07967 -24.24525 -22.70276 -20.84849 -20.43246 -19.96681 -19.21930 -17.47617 -16.99170 -16.38724 -15.61441 -15.33556 -14.97438 -14.37396 -14.19463 -13.85413 -13.47864 -13.34790 -13.27821 -12.99996 -12.94534 -12.60097 -12.47564 -12.43271 -12.06679 -11.98942 -11.74495 -11.63108 -11.39068 -11.17771 -11.00174 -10.87475 -10.71838 -10.65475 -10.62777 -10.46429 -10.01204 -9.58475 -9.43065 -9.04873 -8.77861 -8.48641 -7.05069 -6.26891 -3.20506 2.80516 3.31256 3.48343 3.57912 3.75292 4.54127 4.55266 4.63089 4.69311 4.80954 4.91132 4.97275 5.02482 5.11031 5.21667 5.24893 5.35690 5.40108 5.42617 5.50721 5.58138 5.60822 5.70826 5.73917 5.74777 5.76075 5.82343 5.87335 5.92010 5.96546 5.98504 6.04766 6.11058 6.23046 6.25992 6.29001 6.41507 6.46679 6.52814 6.75663 6.89299 7.65024 7.71129 8.34211 8.41729 9.06299 9.58365 10.24310 11.22503 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018895 B = 0.004808 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.524482 B = 5822.126556 C = 6816.212827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.096 4.096 5 C -0.111 4.111 6 H 0.097 0.903 7 C -0.148 4.148 8 C 0.514 3.486 9 O -0.539 6.539 10 N -0.717 5.717 11 C 0.137 3.863 12 H 0.096 0.904 13 C 0.104 3.896 14 N -0.613 5.613 15 C -0.322 4.322 16 H 0.079 0.921 17 C -0.022 4.022 18 N -0.930 5.930 19 Si 1.075 2.925 20 H -0.302 1.302 21 H -0.288 1.288 22 H -0.298 1.298 23 C 0.141 3.859 24 C -0.112 4.112 25 H 0.081 0.919 26 C -0.137 4.137 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.261 0.739 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 13.818 -8.837 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.134 4.134 5 C -0.133 4.133 6 H 0.115 0.885 7 C -0.205 4.205 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.368 5.368 11 C 0.031 3.969 12 H 0.114 0.886 13 C -0.022 4.022 14 N -0.341 5.341 15 C -0.450 4.450 16 H 0.097 0.903 17 C -0.222 4.222 18 N -0.572 5.572 19 Si 0.910 3.090 20 H -0.230 1.230 21 H -0.215 1.215 22 H -0.226 1.226 23 C 0.014 3.986 24 C -0.132 4.132 25 H 0.099 0.901 26 C -0.194 4.194 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.926 15.252 -8.657 23.029 hybrid contribution -1.374 -1.414 0.276 1.991 sum -16.301 13.838 -8.381 22.966 Atomic orbital electron populations 1.21912 0.95450 1.01711 1.01631 1.21198 0.95755 0.96286 0.98571 1.21825 1.01149 0.95905 1.01559 1.21468 1.01910 0.92177 0.97822 1.21376 1.02061 0.96604 0.93222 0.88516 1.21851 1.01373 1.00354 0.96921 1.20694 0.78401 0.81964 0.88923 1.90697 1.41852 1.64835 1.44204 1.45988 1.61581 1.09926 1.19269 1.22087 0.94720 0.93535 0.86512 0.88556 1.22331 0.94537 0.88049 0.97295 1.44767 1.08526 1.18123 1.62648 1.20165 0.86540 0.93795 1.44462 0.90296 1.25792 0.91315 1.06320 0.98764 1.70922 1.35818 1.02654 1.47783 0.83750 0.73962 0.74829 0.76472 1.23003 1.21534 1.22635 1.21604 0.85058 0.97231 0.94671 1.22642 0.94781 0.95728 1.00079 0.90090 1.21682 0.96613 1.01082 1.00069 0.92529 0.92683 0.92905 0.90859 0.92595 0.92879 0.92685 0.91081 0.91139 0.91783 0.92091 0.91279 0.76732 0.94871 0.93356 0.92921 0.93388 0.95587 0.92490 0.92951 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.95 37.16 0.33 -0.76 16 2 C -0.10 -0.82 2.78 -90.62 -0.25 -1.08 16 3 C -0.15 -1.16 9.19 37.15 0.34 -0.82 16 4 C -0.10 -1.03 3.50 -26.73 -0.09 -1.13 16 5 C -0.11 -1.20 2.59 -91.77 -0.24 -1.43 16 6 H 0.10 0.83 6.34 -51.93 -0.33 0.50 16 7 C -0.15 -1.44 8.85 37.16 0.33 -1.11 16 8 C 0.51 7.79 7.15 -10.99 -0.08 7.71 16 9 O -0.54 -10.46 15.56 5.56 0.09 -10.38 16 10 N -0.72 -10.42 5.00 -52.03 -0.26 -10.68 16 11 C 0.14 2.43 2.78 -66.09 -0.18 2.25 16 12 H 0.10 1.83 7.42 -51.93 -0.39 1.44 16 13 C 0.10 2.39 4.37 -3.06 -0.01 2.38 16 14 N -0.61 -15.38 3.33 -170.06 -0.57 -15.94 16 15 C -0.32 -9.46 10.56 -15.06 -0.16 -9.62 16 16 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 17 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 18 N -0.93 -29.95 13.70 55.49 0.76 -29.19 16 19 Si 1.08 28.90 24.52 -169.99 -4.17 24.73 16 20 H -0.30 -8.18 7.11 56.52 0.40 -7.78 16 21 H -0.29 -7.25 5.40 56.52 0.31 -6.95 16 22 H -0.30 -7.94 6.83 56.52 0.39 -7.55 16 23 C 0.14 2.80 6.70 -2.53 -0.02 2.78 16 24 C -0.11 -1.75 3.27 -88.47 -0.29 -2.04 16 25 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 26 C -0.14 -1.68 9.29 37.16 0.35 -1.34 16 27 H 0.06 0.39 6.46 -51.93 -0.34 0.05 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 38 H 0.07 0.53 6.46 -51.93 -0.34 0.20 16 39 H 0.40 4.57 7.98 -40.82 -0.33 4.24 16 40 H 0.03 0.86 3.88 -51.93 -0.20 0.66 16 41 H 0.05 1.17 6.59 -51.93 -0.34 0.82 16 42 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.52 8.04 -51.93 -0.42 0.10 16 45 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -34.62 356.31 -7.41 -42.03 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.56 Total: -0.96 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.07 Total: -4.99 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.07 Total: -55.81 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 28.90 SS G_CDS: -4.17 Total: 24.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.62 -7.41 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209808454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.441 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds