Wall clock time and date at job start Tue Mar 31 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47530 * 2 1 4 4 C 1.53009 * 109.47135 * 119.99730 * 2 1 3 5 5 C 1.52996 * 109.47582 * 174.33183 * 4 2 1 6 6 H 1.09005 * 109.47043 * 54.24895 * 5 4 2 7 7 C 1.53004 * 109.46756 * 294.25429 * 5 4 2 8 8 C 1.50696 * 109.47528 * 174.25275 * 5 4 2 9 9 O 1.21286 * 119.99854 * 0.02562 * 8 5 4 10 10 N 1.34770 * 120.00118 * 179.97438 * 8 5 4 11 11 C 1.46501 * 119.99689 * 180.02562 * 10 8 5 12 12 H 1.08994 * 110.64800 * 31.85899 * 11 10 8 13 13 C 1.54341 * 110.99868 * 268.77561 * 11 10 8 14 14 N 1.47023 * 107.26466 * 219.60399 * 13 11 10 15 15 C 1.36940 * 125.64684 * 178.85258 * 14 13 11 16 16 H 1.07999 * 119.99644 * 176.89368 * 15 14 13 17 17 C 1.38813 * 119.99869 * 356.90328 * 15 14 13 18 18 N 1.31616 * 119.99468 * 211.01376 * 17 15 14 19 19 Si 1.86800 * 120.00209 * 31.00318 * 17 15 14 20 20 H 1.48491 * 109.47520 * 275.00203 * 19 17 15 21 21 H 1.48509 * 109.46897 * 35.00425 * 19 17 15 22 22 H 1.48499 * 109.46642 * 154.99910 * 19 17 15 23 23 C 1.47427 * 108.70363 * 358.58659 * 14 13 11 24 24 C 1.54911 * 104.83312 * 24.35981 * 23 14 13 25 25 H 1.08991 * 111.00702 * 81.10008 * 24 23 14 26 26 C 1.52998 * 111.00214 * 204.91751 * 24 23 14 27 27 H 1.09000 * 109.47231 * 64.87622 * 1 2 3 28 28 H 1.09003 * 109.47742 * 184.88116 * 1 2 3 29 29 H 1.09001 * 109.47518 * 304.87825 * 1 2 3 30 30 H 1.08996 * 109.47383 * 239.99123 * 2 1 3 31 31 H 1.08996 * 109.47643 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46657 * 299.99909 * 3 2 1 33 33 H 1.09001 * 109.47058 * 59.99165 * 3 2 1 34 34 H 1.09003 * 109.46808 * 54.32951 * 4 2 1 35 35 H 1.09009 * 109.46771 * 294.33463 * 4 2 1 36 36 H 1.08995 * 109.47241 * 305.59912 * 7 5 4 37 37 H 1.09000 * 109.47270 * 65.60576 * 7 5 4 38 38 H 1.09005 * 109.47085 * 185.59957 * 7 5 4 39 39 H 0.97001 * 120.00049 * 359.97438 * 10 8 5 40 40 H 1.09004 * 109.98611 * 100.13562 * 13 11 10 41 41 H 1.08993 * 109.78148 * 338.96024 * 13 11 10 42 42 H 0.96996 * 120.00394 * 354.96420 * 18 17 15 43 43 H 1.09000 * 110.36387 * 143.19565 * 23 14 13 44 44 H 1.08997 * 110.37021 * 265.40678 * 23 14 13 45 45 H 1.08999 * 109.47657 * 58.54210 * 26 24 23 46 46 H 1.09007 * 109.46782 * 178.54732 * 26 24 23 47 47 H 1.09002 * 109.46876 * 298.53847 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5633 -0.8458 1.1803 6 1 4.0018 0.1400 1.0254 7 6 3.9476 -1.7633 0.0177 8 6 4.0788 -1.4279 2.4712 9 8 3.3040 -1.7152 3.3589 10 7 5.4007 -1.6300 2.6387 11 6 5.9017 -2.1964 3.8935 12 1 5.1731 -2.8840 4.3228 13 6 6.2534 -1.0820 4.9018 14 7 7.4895 -1.4876 5.5868 15 6 8.1472 -0.7608 6.5431 16 1 9.0237 -1.1694 7.0240 17 6 7.6874 0.5010 6.8943 18 7 8.5375 1.4244 7.2904 19 14 5.8622 0.8884 6.8045 20 1 5.5113 1.3014 5.4220 21 1 5.0811 -0.3194 7.1737 22 1 5.5435 1.9912 7.7466 23 6 7.8999 -2.8091 5.0784 24 6 7.2625 -2.9077 3.6700 25 1 7.8639 -2.3784 2.9310 26 6 7.0574 -4.3679 3.2619 27 1 -0.3634 0.4363 -0.9304 28 1 -0.3635 -1.0239 0.0874 29 1 -0.3634 0.5876 0.8430 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.5960 -1.7154 1.3016 35 1 1.7618 -0.1520 2.1364 36 1 3.4295 -2.7167 0.1206 37 1 3.6629 -1.2948 -0.9244 38 1 5.0245 -1.9320 0.0287 39 1 6.0202 -1.4013 1.9283 40 1 5.4478 -0.9681 5.6272 41 1 6.4140 -0.1429 4.3725 42 1 9.4746 1.2030 7.4071 43 1 8.9861 -2.8679 5.0082 44 1 7.5190 -3.5995 5.7252 45 1 6.4186 -4.8633 3.9930 46 1 6.5850 -4.4079 2.2803 47 1 8.0226 -4.8728 3.2213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209808455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:20 Heat of formation + Delta-G solvation = -37.418898 kcal Electronic energy + Delta-G solvation = -23460.105862 eV Core-core repulsion = 20256.649142 eV Total energy + Delta-G solvation = -3203.456720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06465 -38.14870 -36.79590 -34.11068 -33.07080 -32.34456 -30.98349 -28.01686 -27.35675 -26.77566 -26.02662 -24.23580 -22.67230 -20.77404 -20.40351 -19.92327 -19.24968 -17.40698 -16.94289 -16.36220 -15.74485 -15.16899 -14.83291 -14.42406 -14.15571 -13.82492 -13.47132 -13.33154 -13.23668 -13.05259 -12.95054 -12.62173 -12.48660 -12.44219 -12.11057 -11.90292 -11.66296 -11.64242 -11.39851 -11.10541 -10.98338 -10.85676 -10.71256 -10.63644 -10.61771 -10.45689 -10.08658 -9.69384 -9.48358 -9.28139 -8.67942 -8.32032 -7.04939 -6.35607 -3.10977 2.82388 3.32257 3.48782 3.58554 3.72951 4.54878 4.56931 4.62822 4.70602 4.84233 4.89547 4.97932 5.00496 5.10407 5.23448 5.27531 5.35559 5.40756 5.45786 5.51402 5.55270 5.61643 5.70545 5.74415 5.76185 5.77888 5.84673 5.89573 5.92940 5.95380 5.99133 6.05474 6.14460 6.22744 6.27714 6.31131 6.46720 6.49934 6.59006 6.78457 6.91973 7.68698 7.73859 8.34922 8.43110 9.06108 9.63444 10.29273 11.15815 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.004969 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.075066 B = 5634.022340 C = 6776.073025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.096 4.096 5 C -0.114 4.114 6 H 0.099 0.901 7 C -0.143 4.143 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.717 5.717 11 C 0.138 3.862 12 H 0.096 0.904 13 C 0.098 3.902 14 N -0.609 5.609 15 C -0.337 4.337 16 H 0.080 0.920 17 C -0.016 4.016 18 N -0.913 5.913 19 Si 1.062 2.938 20 H -0.295 1.295 21 H -0.291 1.291 22 H -0.299 1.299 23 C 0.143 3.857 24 C -0.112 4.112 25 H 0.081 0.919 26 C -0.136 4.136 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.398 0.602 40 H 0.040 0.960 41 H 0.044 0.956 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.024 0.976 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 -6.705 -18.716 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.133 4.133 5 C -0.136 4.136 6 H 0.117 0.883 7 C -0.200 4.200 8 C 0.301 3.699 9 O -0.417 6.417 10 N -0.368 5.368 11 C 0.033 3.967 12 H 0.114 0.886 13 C -0.028 4.028 14 N -0.337 5.337 15 C -0.464 4.464 16 H 0.098 0.902 17 C -0.217 4.217 18 N -0.553 5.553 19 Si 0.896 3.104 20 H -0.223 1.223 21 H -0.219 1.219 22 H -0.227 1.227 23 C 0.017 3.983 24 C -0.132 4.132 25 H 0.099 0.901 26 C -0.194 4.194 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.233 0.767 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.076 -5.649 -17.775 22.219 hybrid contribution 1.437 -1.080 -0.380 1.837 sum -10.640 -6.728 -18.155 22.093 Atomic orbital electron populations 1.21827 0.95231 1.01770 1.01599 1.21182 0.95750 0.96375 0.98373 1.21925 1.01200 0.95992 1.01777 1.21480 0.92366 1.01427 0.98070 1.21401 0.98197 1.00868 0.93106 0.88274 1.21811 1.01600 0.99420 0.97193 1.20671 0.82243 0.77942 0.89080 1.90697 1.56085 1.50992 1.43887 1.45996 1.07492 1.65096 1.18170 1.22057 0.95259 0.95237 0.84140 0.88620 1.22103 0.90110 0.96365 0.94216 1.44768 1.25768 1.17980 1.45200 1.19970 1.09091 0.99169 1.18139 0.90203 1.25594 1.05761 0.90694 0.99671 1.70922 1.04344 1.30447 1.49627 0.83912 0.76189 0.74495 0.75816 1.22269 1.21915 1.22690 1.21559 0.97741 0.88450 0.90578 1.22628 0.95582 0.95670 0.99334 0.90080 1.21683 1.01501 0.95344 1.00893 0.92891 0.92704 0.92605 0.91029 0.92443 0.92881 0.92497 0.91332 0.90918 0.92079 0.91410 0.92213 0.76725 0.94282 0.93799 0.92638 0.93354 0.95873 0.92545 0.92965 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.15 0.34 -0.84 16 2 C -0.10 -0.84 2.80 -90.62 -0.25 -1.09 16 3 C -0.15 -1.28 8.97 37.16 0.33 -0.95 16 4 C -0.10 -1.04 3.50 -26.73 -0.09 -1.14 16 5 C -0.11 -1.25 2.60 -91.77 -0.24 -1.49 16 6 H 0.10 1.00 6.34 -51.93 -0.33 0.67 16 7 C -0.14 -1.17 8.78 37.16 0.33 -0.85 16 8 C 0.51 7.88 7.15 -10.99 -0.08 7.80 16 9 O -0.54 -10.52 15.55 5.55 0.09 -10.43 16 10 N -0.72 -10.58 4.98 -52.02 -0.26 -10.84 16 11 C 0.14 2.48 2.77 -66.08 -0.18 2.30 16 12 H 0.10 1.82 7.42 -51.93 -0.39 1.44 16 13 C 0.10 2.29 4.59 -3.05 -0.01 2.27 16 14 N -0.61 -15.40 3.37 -170.06 -0.57 -15.98 16 15 C -0.34 -9.88 10.43 -15.06 -0.16 -10.04 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 17 C -0.02 -0.49 5.45 -17.43 -0.09 -0.58 16 18 N -0.91 -29.03 13.70 55.49 0.76 -28.27 16 19 Si 1.06 28.53 24.66 -169.99 -4.19 24.34 16 20 H -0.29 -7.62 6.41 56.52 0.36 -7.26 16 21 H -0.29 -7.69 6.35 56.52 0.36 -7.33 16 22 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 23 C 0.14 2.87 6.70 -2.53 -0.02 2.86 16 24 C -0.11 -1.77 3.27 -88.47 -0.29 -2.06 16 25 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 26 C -0.14 -1.70 9.30 37.16 0.35 -1.35 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 31 H 0.06 0.48 6.47 -51.93 -0.34 0.14 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.94 7.93 -51.92 -0.41 0.53 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.45 6.74 -51.93 -0.35 0.10 16 38 H 0.06 0.44 7.41 -51.93 -0.38 0.06 16 39 H 0.40 4.69 7.92 -40.82 -0.32 4.36 16 40 H 0.04 1.01 4.39 -51.93 -0.23 0.79 16 41 H 0.04 1.08 6.65 -51.93 -0.35 0.74 16 42 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.46 8.04 -51.93 -0.42 0.05 16 45 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 46 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -34.25 357.73 -7.43 -41.67 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.57 Total: -0.74 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.07 Total: -5.15 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.07 Total: -55.08 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 28.53 SS G_CDS: -4.19 Total: 24.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.25 -7.43 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209808455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.255 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds