Wall clock time and date at job start Tue Mar 31 2020 06:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47089 * 2 1 4 4 C 1.52995 * 109.47845 * 120.00428 * 2 1 3 5 5 H 1.09000 * 109.47162 * 300.00229 * 4 2 1 6 6 C 1.52992 * 109.47348 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.47126 * 59.99595 * 4 2 1 8 8 C 1.50701 * 109.47308 * 185.00258 * 7 4 2 9 9 O 1.21279 * 119.99919 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99791 * 180.02562 * 8 7 4 11 11 C 1.47428 * 125.64359 * 179.97438 * 10 8 7 12 12 C 1.54905 * 104.83005 * 204.16353 * 11 10 8 13 13 H 1.09004 * 111.00717 * 81.06589 * 12 11 10 14 14 C 1.52998 * 111.00757 * 204.91596 * 12 11 10 15 15 C 1.55162 * 101.58494 * 322.99378 * 12 11 10 16 16 H 1.08995 * 110.86872 * 277.06330 * 15 12 11 17 17 N 1.46499 * 110.72136 * 153.86398 * 15 12 11 18 18 C 1.36931 * 120.00122 * 160.02424 * 17 15 12 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47017 * 125.65077 * 0.02755 * 10 8 7 27 27 H 1.09003 * 109.46565 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46568 * 299.99291 * 1 2 3 29 29 H 1.08988 * 109.47460 * 59.99503 * 1 2 3 30 30 H 1.09007 * 109.46568 * 240.00709 * 2 1 3 31 31 H 1.08994 * 109.47053 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47142 * 300.00789 * 3 2 1 33 33 H 1.09000 * 109.46582 * 60.00589 * 3 2 1 34 34 H 1.08995 * 109.47297 * 60.00248 * 6 4 2 35 35 H 1.09004 * 109.47275 * 179.97438 * 6 4 2 36 36 H 1.09003 * 109.47558 * 299.99568 * 6 4 2 37 37 H 1.09000 * 109.46763 * 65.00001 * 7 4 2 38 38 H 1.08997 * 109.47217 * 305.00349 * 7 4 2 39 39 H 1.09001 * 110.36863 * 323.00503 * 11 10 8 40 40 H 1.09000 * 110.36244 * 85.21986 * 11 10 8 41 41 H 1.09000 * 109.47369 * 172.19661 * 14 12 11 42 42 H 1.08999 * 109.47009 * 292.20242 * 14 12 11 43 43 H 1.09002 * 109.46507 * 52.19707 * 14 12 11 44 44 H 0.97001 * 119.99790 * 340.01941 * 17 15 12 45 45 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88283 * 59.48847 * 26 10 8 47 47 H 1.09004 * 110.01221 * 298.39274 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0402 -0.7213 1.2491 5 1 1.6769 -0.2076 2.1392 6 6 3.5701 -0.7218 1.2487 7 6 1.5302 -2.1638 1.2491 8 6 1.9290 -2.8377 2.5367 9 8 2.5587 -2.2244 3.3723 10 7 1.5859 -4.1218 2.7596 11 6 1.9098 -4.9001 3.9691 12 6 1.8773 -6.3790 3.5094 13 1 2.8098 -6.6558 3.0173 14 6 1.5824 -7.3126 4.6851 15 6 0.6987 -6.3659 2.5004 16 1 -0.2562 -6.4589 3.0176 17 7 0.8543 -7.4320 1.5077 18 6 -0.2304 -7.8663 0.7936 19 1 -1.2006 -7.4225 0.9619 20 6 -0.0831 -8.8768 -0.1467 21 7 1.0993 -9.4172 -0.3522 22 14 -1.5613 -9.4637 -1.1263 23 1 -1.1405 -10.5375 -2.0618 24 1 -2.5924 -9.9924 -0.1975 25 1 -2.1263 -8.3279 -1.8984 26 6 0.8276 -4.9788 1.8365 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 3.9338 0.3057 1.2485 35 1 3.9336 -1.2353 2.1388 36 1 3.9331 -1.2359 0.3586 37 1 1.9647 -2.7028 0.4072 38 1 0.4439 -2.1651 1.1596 39 1 2.9028 -4.6380 4.3343 40 1 1.1631 -4.7255 4.7437 41 1 1.4282 -8.3260 4.3147 42 1 2.4246 -7.3028 5.3770 43 1 0.6842 -6.9738 5.2014 44 1 1.7257 -7.8302 1.3562 45 1 1.2023 -10.1231 -1.0095 46 1 1.3618 -5.0686 0.8907 47 1 -0.1626 -4.5569 1.6642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214307914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:20 Heat of formation + Delta-G solvation = -50.815207 kcal Electronic energy + Delta-G solvation = -23117.745060 eV Core-core repulsion = 19913.707432 eV Total energy + Delta-G solvation = -3204.037628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.00144 -38.14099 -36.80881 -34.07263 -32.57071 -31.48368 -30.71471 -28.81023 -27.50344 -26.89478 -25.45606 -23.99364 -22.91672 -21.44637 -19.98323 -19.67095 -18.77305 -17.15300 -16.79007 -16.13901 -15.37122 -15.05840 -14.71724 -14.38664 -14.12121 -13.69917 -13.58837 -13.34321 -13.19514 -12.90808 -12.62616 -12.46212 -12.39505 -12.10702 -11.91733 -11.79200 -11.64398 -11.54359 -11.15696 -11.12414 -11.01142 -10.78371 -10.65940 -10.61804 -10.48898 -10.42404 -10.29916 -9.98528 -9.77972 -9.45594 -9.01741 -8.28238 -7.12268 -5.87739 -3.18726 2.89833 3.28765 3.37590 3.42883 3.43470 4.48494 4.60180 4.71725 4.77952 4.89031 5.06613 5.14511 5.18154 5.23428 5.39133 5.50274 5.53904 5.54527 5.56310 5.63014 5.69252 5.72807 5.76500 5.81586 5.84054 5.86490 5.90739 5.96818 5.99718 6.02644 6.12432 6.18816 6.23319 6.26414 6.37710 6.43566 6.47969 6.50024 6.57209 6.64265 6.86329 7.59757 7.86081 8.29524 8.44564 9.41639 9.95556 10.30568 11.34089 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004279 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.584515 B = 6542.557696 C = 7882.090962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.068 4.068 5 H 0.075 0.925 6 C -0.154 4.154 7 C -0.136 4.136 8 C 0.526 3.474 9 O -0.554 6.554 10 N -0.614 5.614 11 C 0.114 3.886 12 C -0.113 4.113 13 H 0.083 0.917 14 C -0.133 4.133 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.712 5.712 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.073 3.927 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.073 0.927 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 15.319 3.945 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.087 4.087 5 H 0.094 0.906 6 C -0.211 4.211 7 C -0.176 4.176 8 C 0.316 3.684 9 O -0.433 6.433 10 N -0.348 5.348 11 C -0.009 4.009 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.191 4.191 15 C 0.065 3.935 16 H 0.083 0.917 17 N -0.352 5.352 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.053 4.053 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.257 15.638 4.260 16.257 hybrid contribution -0.614 -0.567 -0.838 1.183 sum 0.643 15.072 3.422 15.469 Atomic orbital electron populations 1.21933 0.95388 1.02032 1.01567 1.21176 0.95655 0.96227 0.98191 1.21874 1.01253 0.95882 1.01421 1.20911 0.96360 0.93429 0.97976 0.90626 1.22000 0.94909 1.01604 1.02622 1.21804 1.03027 0.96694 0.96034 1.20376 0.79003 0.80274 0.88776 1.90617 1.41211 1.63824 1.47662 1.48602 1.55083 1.10997 1.20105 1.22231 1.00773 0.90371 0.87569 1.22615 1.00444 0.93024 0.97250 0.89877 1.21609 1.00662 1.00188 0.96652 1.21244 0.96065 0.86840 0.89388 0.91666 1.42351 1.09855 1.39656 1.43318 1.19192 0.89094 1.15055 1.14699 0.91045 1.24757 0.96741 0.99059 0.99814 1.69653 1.21546 1.29055 1.37406 0.86275 0.81930 0.78198 0.79795 1.21646 1.21151 1.21155 1.23315 0.94886 0.93127 0.94000 0.92215 0.92747 0.92837 0.91143 0.92349 0.92981 0.92802 0.92870 0.90732 0.93425 0.88976 0.88838 0.91102 0.91836 0.91346 0.93187 0.92867 0.77870 0.93279 0.90861 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.85 37.16 0.33 -1.09 16 2 C -0.09 -0.92 2.51 -90.62 -0.23 -1.15 16 3 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 4 C -0.07 -0.80 1.62 -90.62 -0.15 -0.94 16 5 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 6 C -0.15 -1.87 8.58 37.15 0.32 -1.55 16 7 C -0.14 -1.74 4.15 -27.88 -0.12 -1.86 16 8 C 0.53 8.36 7.57 -10.98 -0.08 8.28 16 9 O -0.55 -10.07 14.22 5.56 0.08 -9.99 16 10 N -0.61 -9.79 3.33 -170.52 -0.57 -10.36 16 11 C 0.11 1.71 6.37 -2.53 -0.02 1.69 16 12 C -0.11 -1.78 3.25 -88.47 -0.29 -2.07 16 13 H 0.08 1.39 8.00 -51.93 -0.42 0.97 16 14 C -0.13 -1.87 9.31 37.16 0.35 -1.52 16 15 C 0.18 3.23 3.06 -66.09 -0.20 3.03 16 16 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 17 N -0.71 -16.43 5.18 -51.65 -0.27 -16.70 16 18 C -0.25 -6.45 9.98 -15.06 -0.15 -6.60 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 21 N -0.93 -26.75 13.06 55.49 0.72 -26.03 16 22 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.07 1.22 6.24 -3.07 -0.02 1.20 16 27 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.45 8.14 -51.94 -0.42 0.03 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 35 H 0.07 1.09 5.95 -51.93 -0.31 0.78 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.11 6.17 -51.93 -0.32 0.79 16 39 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 40 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.39 9.63 7.71 -40.82 -0.31 9.31 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -28.77 365.16 -8.20 -36.97 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.63 Total: 8.10 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.02 Total: -3.83 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.11 Total: -53.09 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.77 -8.20 -36.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214307914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.845 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds