Wall clock time and date at job start Tue Mar 31 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47089 * 2 1 4 4 C 1.52995 * 109.47845 * 120.00428 * 2 1 3 5 5 H 1.09000 * 109.47162 * 300.00229 * 4 2 1 6 6 C 1.52992 * 109.47348 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.47126 * 59.99595 * 4 2 1 8 8 C 1.50701 * 109.47308 * 185.00258 * 7 4 2 9 9 O 1.21279 * 119.99919 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99791 * 180.02562 * 8 7 4 11 11 C 1.47428 * 125.64359 * 179.97438 * 10 8 7 12 12 C 1.54905 * 104.83005 * 204.16353 * 11 10 8 13 13 H 1.09004 * 111.00717 * 81.06589 * 12 11 10 14 14 C 1.52998 * 111.00757 * 204.91596 * 12 11 10 15 15 C 1.55162 * 101.58494 * 322.99378 * 12 11 10 16 16 H 1.08995 * 110.86872 * 277.06330 * 15 12 11 17 17 N 1.46499 * 110.72136 * 153.86398 * 15 12 11 18 18 C 1.36931 * 120.00122 * 160.02424 * 17 15 12 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47017 * 125.65077 * 0.02755 * 10 8 7 27 27 H 1.09003 * 109.46565 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46568 * 299.99291 * 1 2 3 29 29 H 1.08988 * 109.47460 * 59.99503 * 1 2 3 30 30 H 1.09007 * 109.46568 * 240.00709 * 2 1 3 31 31 H 1.08994 * 109.47053 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47142 * 300.00789 * 3 2 1 33 33 H 1.09000 * 109.46582 * 60.00589 * 3 2 1 34 34 H 1.08995 * 109.47297 * 60.00248 * 6 4 2 35 35 H 1.09004 * 109.47275 * 179.97438 * 6 4 2 36 36 H 1.09003 * 109.47558 * 299.99568 * 6 4 2 37 37 H 1.09000 * 109.46763 * 65.00001 * 7 4 2 38 38 H 1.08997 * 109.47217 * 305.00349 * 7 4 2 39 39 H 1.09001 * 110.36863 * 323.00503 * 11 10 8 40 40 H 1.09000 * 110.36244 * 85.21986 * 11 10 8 41 41 H 1.09000 * 109.47369 * 172.19661 * 14 12 11 42 42 H 1.08999 * 109.47009 * 292.20242 * 14 12 11 43 43 H 1.09002 * 109.46507 * 52.19707 * 14 12 11 44 44 H 0.97001 * 119.99790 * 340.01941 * 17 15 12 45 45 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88283 * 59.48847 * 26 10 8 47 47 H 1.09004 * 110.01221 * 298.39274 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0402 -0.7213 1.2491 5 1 1.6769 -0.2076 2.1392 6 6 3.5701 -0.7218 1.2487 7 6 1.5302 -2.1638 1.2491 8 6 1.9290 -2.8377 2.5367 9 8 2.5587 -2.2244 3.3723 10 7 1.5859 -4.1218 2.7596 11 6 1.9098 -4.9001 3.9691 12 6 1.8773 -6.3790 3.5094 13 1 2.8098 -6.6558 3.0173 14 6 1.5824 -7.3126 4.6851 15 6 0.6987 -6.3659 2.5004 16 1 -0.2562 -6.4589 3.0176 17 7 0.8543 -7.4320 1.5077 18 6 -0.2304 -7.8663 0.7936 19 1 -1.2006 -7.4225 0.9619 20 6 -0.0831 -8.8768 -0.1467 21 7 1.0993 -9.4172 -0.3522 22 14 -1.5613 -9.4637 -1.1263 23 1 -1.1405 -10.5375 -2.0618 24 1 -2.5924 -9.9924 -0.1975 25 1 -2.1263 -8.3279 -1.8984 26 6 0.8276 -4.9788 1.8365 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 3.9338 0.3057 1.2485 35 1 3.9336 -1.2353 2.1388 36 1 3.9331 -1.2359 0.3586 37 1 1.9647 -2.7028 0.4072 38 1 0.4439 -2.1651 1.1596 39 1 2.9028 -4.6380 4.3343 40 1 1.1631 -4.7255 4.7437 41 1 1.4282 -8.3260 4.3147 42 1 2.4246 -7.3028 5.3770 43 1 0.6842 -6.9738 5.2014 44 1 1.7257 -7.8302 1.3562 45 1 1.2023 -10.1231 -1.0095 46 1 1.3618 -5.0686 0.8907 47 1 -0.1626 -4.5569 1.6642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214307914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:19 Heat of formation + Delta-G solvation = -66.360839 kcal Electronic energy + Delta-G solvation = -23118.419169 eV Core-core repulsion = 19913.707432 eV Total energy + Delta-G solvation = -3204.711737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27189 -39.36749 -37.89220 -35.82649 -33.97655 -32.63659 -32.25100 -29.78135 -29.07272 -27.83698 -26.52699 -25.80516 -23.90798 -22.84838 -21.38494 -20.60291 -19.99553 -19.05713 -18.05027 -17.44380 -16.71602 -16.42482 -15.93289 -15.57710 -15.31141 -15.17991 -14.75100 -14.63940 -14.45492 -14.20673 -13.94191 -13.72274 -13.35082 -13.15818 -13.00377 -12.86229 -12.80174 -12.74973 -12.67400 -12.61203 -12.24651 -12.15395 -12.02048 -11.96956 -11.67414 -11.58666 -11.40806 -11.35937 -11.27787 -10.94843 -10.66911 -9.60964 -9.04435 -7.92403 -5.22277 1.52017 1.53271 1.59306 1.63413 2.03560 2.58774 3.38438 3.41477 3.76557 3.79989 3.83108 3.90997 3.92518 4.15046 4.23048 4.24164 4.36827 4.47347 4.53097 4.57138 4.62426 4.69102 4.72349 4.75112 4.80228 4.88245 4.90978 4.93259 5.03619 5.06997 5.09966 5.12202 5.14829 5.25174 5.26542 5.31523 5.32651 5.42056 5.49262 5.56957 5.57817 5.59120 6.27955 6.56197 7.17189 7.35884 8.07426 8.31579 9.30338 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004279 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.584515 B = 6542.557696 C = 7882.090962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.063 4.063 5 H 0.064 0.936 6 C -0.151 4.151 7 C -0.132 4.132 8 C 0.522 3.478 9 O -0.577 6.577 10 N -0.617 5.617 11 C 0.116 3.884 12 C -0.104 4.104 13 H 0.069 0.931 14 C -0.128 4.128 15 C 0.171 3.829 16 H 0.069 0.931 17 N -0.722 5.722 18 C -0.242 4.242 19 H 0.081 0.919 20 C -0.068 4.068 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.300 1.300 24 H -0.278 1.278 25 H -0.277 1.277 26 C 0.087 3.913 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.375 0.625 45 H 0.250 0.750 46 H 0.057 0.943 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 16.731 4.099 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.082 4.082 5 H 0.082 0.918 6 C -0.208 4.208 7 C -0.171 4.171 8 C 0.313 3.687 9 O -0.458 6.458 10 N -0.350 5.350 11 C -0.006 4.006 12 C -0.124 4.124 13 H 0.087 0.913 14 C -0.185 4.185 15 C 0.060 3.940 16 H 0.087 0.913 17 N -0.361 5.361 18 C -0.373 4.373 19 H 0.099 0.901 20 C -0.261 4.261 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.227 1.227 24 H -0.205 1.205 25 H -0.203 1.203 26 C -0.039 4.039 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.076 17.093 4.447 17.662 hybrid contribution -0.221 -0.939 -0.799 1.252 sum -0.145 16.154 3.648 16.561 Atomic orbital electron populations 1.21931 0.94838 1.01972 1.02148 1.21145 0.96093 0.96657 0.96979 1.21865 1.01297 0.95146 1.02002 1.20880 0.95972 0.92776 0.98591 0.91754 1.21950 0.95312 1.02138 1.01408 1.21856 1.03873 0.97081 0.94326 1.20905 0.78358 0.80025 0.89433 1.90611 1.42218 1.64251 1.48733 1.48656 1.55016 1.11138 1.20167 1.22262 1.01335 0.89426 0.87626 1.22520 0.98633 0.94109 0.97123 0.91258 1.21565 1.02287 0.98405 0.96272 1.21426 0.97328 0.86169 0.89042 0.91283 1.42467 1.08665 1.40861 1.44119 1.19589 0.90020 1.13978 1.13749 0.90119 1.25488 0.98993 1.00053 1.01569 1.69808 1.23506 1.29996 1.38474 0.85299 0.79139 0.77485 0.78347 1.22691 1.20453 1.20290 1.22965 0.95404 0.92411 0.93143 0.92575 0.92691 0.91776 0.91000 0.92301 0.91836 0.92808 0.91530 0.93408 0.93024 0.88704 0.87513 0.91103 0.90271 0.93403 0.91066 0.91436 0.79285 0.94091 0.92461 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.85 71.98 0.64 -1.86 16 2 C -0.09 -1.60 2.51 -10.79 -0.03 -1.63 16 3 C -0.15 -2.26 8.84 71.98 0.64 -1.62 16 4 C -0.06 -1.41 1.62 -10.80 -0.02 -1.43 16 5 H 0.06 1.59 7.95 -2.39 -0.02 1.57 16 6 C -0.15 -3.54 8.58 71.98 0.62 -2.93 16 7 C -0.13 -3.22 4.15 29.85 0.12 -3.10 16 8 C 0.52 16.09 7.57 87.66 0.66 16.76 16 9 O -0.58 -20.66 14.22 -3.03 -0.04 -20.70 16 10 N -0.62 -18.90 3.33 -811.80 -2.70 -21.60 16 11 C 0.12 3.31 6.37 86.85 0.55 3.86 16 12 C -0.10 -3.16 3.25 -9.40 -0.03 -3.20 16 13 H 0.07 2.32 8.00 -2.38 -0.02 2.30 16 14 C -0.13 -3.38 9.31 71.98 0.67 -2.71 16 15 C 0.17 6.08 3.06 46.18 0.14 6.22 16 16 H 0.07 2.44 8.02 -2.39 -0.02 2.42 16 17 N -0.72 -33.34 5.18 -317.33 -1.64 -34.98 16 18 C -0.24 -12.37 9.98 84.03 0.84 -11.53 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 20 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 21 N -0.97 -56.67 13.06 21.65 0.28 -56.39 16 22 Si 0.97 43.81 29.55 68.60 2.03 45.84 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 26 C 0.09 2.81 6.24 86.73 0.54 3.35 16 27 H 0.06 0.96 6.32 -2.39 -0.02 0.94 16 28 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 0.90 6.43 -2.39 -0.02 0.88 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.35 6.43 -2.39 -0.02 1.33 16 35 H 0.05 1.39 5.95 -2.39 -0.01 1.37 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.11 2.33 6.17 -2.39 -0.01 2.31 16 39 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 44 H 0.37 19.00 7.71 -92.71 -0.72 18.29 16 45 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 46 H 0.06 2.06 8.03 -2.39 -0.02 2.04 16 47 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -61.07 365.16 3.95 -57.12 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.21 Total: 33.76 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.81 Total: -3.04 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -4.06 Total: -112.97 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.04 Total: -20.70 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -61.07 3.95 -57.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214307914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.242 kcal (2) G-P(sol) polarization free energy of solvation -61.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds