Wall clock time and date at job start Tue Mar 31 2020 06:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 8 8 C 1.50704 * 109.47487 * 174.99576 * 7 4 2 9 9 O 1.21279 * 119.99546 * 0.02562 * 8 7 4 10 10 N 1.34777 * 120.00119 * 179.97438 * 8 7 4 11 11 C 1.47024 * 125.64556 * 179.71934 * 10 8 7 12 12 C 1.54336 * 107.26416 * 178.85230 * 11 10 8 13 13 H 1.08991 * 110.66747 * 96.51792 * 12 11 10 14 14 C 1.53002 * 110.84975 * 219.67466 * 12 11 10 15 15 C 1.55165 * 103.01695 * 338.13835 * 12 11 10 16 16 H 1.08999 * 111.00085 * 277.22906 * 15 12 11 17 17 N 1.46497 * 110.99908 * 153.38583 * 15 12 11 18 18 C 1.36934 * 120.00073 * 161.35410 * 17 15 12 19 19 H 1.07998 * 120.00056 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00585 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99318 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47002 * 89.99530 * 22 20 18 24 24 H 1.48501 * 109.47273 * 209.99989 * 22 20 18 25 25 H 1.48502 * 109.47310 * 330.00010 * 22 20 18 26 26 C 1.47422 * 125.64995 * 0.02562 * 10 8 7 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.09004 * 109.47261 * 180.02562 * 6 4 2 35 35 H 1.09002 * 109.47153 * 300.00216 * 6 4 2 36 36 H 1.09001 * 109.47289 * 60.00300 * 6 4 2 37 37 H 1.08997 * 109.46920 * 294.99487 * 7 4 2 38 38 H 1.08998 * 109.47295 * 54.99780 * 7 4 2 39 39 H 1.08994 * 109.88262 * 298.39315 * 11 10 8 40 40 H 1.09002 * 109.88534 * 59.55911 * 11 10 8 41 41 H 1.08999 * 109.47067 * 173.69548 * 14 12 11 42 42 H 1.09005 * 109.46922 * 293.68978 * 14 12 11 43 43 H 1.09000 * 109.47079 * 53.68970 * 14 12 11 44 44 H 0.97001 * 120.00407 * 341.34138 * 17 15 12 45 45 H 0.97007 * 119.99610 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.36361 * 322.93169 * 26 10 8 47 47 H 1.09002 * 110.36289 * 85.14460 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6768 -0.2075 -2.1391 6 6 3.5700 -0.7207 -1.2494 7 6 1.5300 -2.1637 -1.2491 8 6 1.9287 -2.8376 -2.5368 9 8 2.5591 -2.2246 -3.3720 10 7 1.5856 -4.1217 -2.7597 11 6 1.9030 -4.8960 -3.9686 12 6 1.3374 -6.3173 -3.7639 13 1 0.3583 -6.4129 -4.2331 14 6 2.3026 -7.3714 -4.3101 15 6 1.2198 -6.4278 -2.2207 16 1 2.1754 -6.7039 -1.7749 17 7 0.1715 -7.3779 -1.8407 18 6 0.1534 -7.9090 -0.5787 19 1 0.9123 -7.6277 0.1364 20 6 -0.8402 -8.8089 -0.2184 21 7 -1.7653 -9.1512 -1.0898 22 14 -0.8644 -9.5339 1.5029 23 1 -1.6737 -8.6649 2.3947 24 1 -1.4625 -10.8924 1.4595 25 1 0.5238 -9.6206 2.0231 26 6 0.8243 -4.9807 -1.8345 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 3.9334 -1.2342 -2.1396 35 1 3.9330 0.3071 -1.2497 36 1 3.9338 -1.2343 -0.3594 37 1 1.9647 -2.7027 -0.4073 38 1 0.4437 -2.1651 -1.1596 39 1 1.4386 -4.4319 -4.8386 40 1 2.9834 -4.9449 -4.1045 41 1 1.9365 -8.3659 -4.0553 42 1 2.3698 -7.2756 -5.3939 43 1 3.2889 -7.2234 -3.8704 44 1 -0.5101 -7.6307 -2.4830 45 1 -2.4599 -9.7798 -0.8379 46 1 1.1083 -4.7723 -0.8030 47 1 -0.2465 -4.8292 -1.9706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214307919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:22 Heat of formation + Delta-G solvation = -51.108249 kcal Electronic energy + Delta-G solvation = -23104.593649 eV Core-core repulsion = 19900.543314 eV Total energy + Delta-G solvation = -3204.050335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01774 -38.15279 -36.82074 -34.08581 -32.58509 -31.50038 -30.72163 -28.82369 -27.51705 -26.90682 -25.46642 -23.99571 -22.94024 -21.46237 -19.95808 -19.67230 -18.83357 -17.19764 -16.79328 -15.98125 -15.59570 -15.10320 -14.59249 -14.37668 -14.05935 -13.71306 -13.65947 -13.30174 -13.11925 -12.97483 -12.78987 -12.53519 -12.38120 -12.04773 -11.92591 -11.81730 -11.74754 -11.51027 -11.13379 -11.13081 -11.03242 -10.78996 -10.67352 -10.61706 -10.50658 -10.43525 -10.27398 -9.94913 -9.80621 -9.46639 -9.04117 -8.30431 -7.11962 -5.88581 -3.19396 2.88583 3.26987 3.36780 3.42967 3.44070 4.46946 4.59725 4.70140 4.76594 4.88055 5.05098 5.12492 5.18750 5.21936 5.37798 5.48861 5.51569 5.53198 5.54944 5.62687 5.66671 5.71976 5.76183 5.80954 5.83104 5.84350 5.91917 5.95845 6.00324 6.01446 6.11106 6.19875 6.22493 6.25321 6.36144 6.42065 6.44893 6.47291 6.55674 6.62824 6.85765 7.59964 7.84483 8.28737 8.43452 9.41048 9.94732 10.29782 11.33358 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.004252 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.837770 B = 6583.978415 C = 7943.874277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.068 4.068 5 H 0.076 0.924 6 C -0.154 4.154 7 C -0.136 4.136 8 C 0.526 3.474 9 O -0.553 6.553 10 N -0.615 5.615 11 C 0.117 3.883 12 C -0.114 4.114 13 H 0.083 0.917 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.711 5.711 18 C -0.248 4.248 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.073 3.927 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.069 0.931 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 14.804 -0.969 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.087 4.087 5 H 0.094 0.906 6 C -0.211 4.211 7 C -0.175 4.175 8 C 0.315 3.685 9 O -0.432 6.432 10 N -0.349 5.349 11 C -0.006 4.006 12 C -0.133 4.133 13 H 0.102 0.898 14 C -0.192 4.192 15 C 0.065 3.935 16 H 0.082 0.918 17 N -0.351 5.351 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.053 4.053 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.222 0.778 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.114 15.100 -1.214 16.735 hybrid contribution -0.510 -0.567 0.850 1.142 sum 6.604 14.533 -0.364 15.967 Atomic orbital electron populations 1.21937 0.95334 1.02095 1.01606 1.21171 0.95691 0.96217 0.98127 1.21875 1.01220 0.95894 1.01453 1.20914 0.96336 0.93438 0.98035 0.90593 1.22001 0.94922 1.01622 1.02564 1.21805 1.03142 0.96668 0.95931 1.20378 0.79099 0.80172 0.88856 1.90619 1.41135 1.63846 1.47647 1.48599 1.55180 1.11058 1.20014 1.21944 1.00028 0.91049 0.87622 1.22476 0.99880 0.92776 0.98204 0.89827 1.21666 0.98479 0.99334 0.99697 1.21354 0.93434 0.87665 0.91058 0.91759 1.42295 1.30343 1.48959 1.13491 1.19227 1.09374 1.20004 0.89322 0.91008 1.24755 0.97653 0.99934 0.98050 1.69660 1.16508 1.37435 1.34036 0.86199 0.77539 0.78436 0.84043 1.21597 1.21704 1.20655 1.23498 0.95915 0.93032 0.92895 0.92170 0.92717 0.92829 0.91184 0.92975 0.92367 0.92780 0.90719 0.92860 0.93478 0.89055 0.88741 0.92148 0.91784 0.91354 0.93201 0.92912 0.77846 0.93326 0.91291 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.85 37.16 0.33 -1.09 16 2 C -0.09 -0.90 2.51 -90.62 -0.23 -1.13 16 3 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 4 C -0.07 -0.79 1.62 -90.63 -0.15 -0.93 16 5 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 6 C -0.15 -1.80 8.58 37.16 0.32 -1.49 16 7 C -0.14 -1.70 3.97 -27.88 -0.11 -1.81 16 8 C 0.53 8.25 7.57 -10.98 -0.08 8.17 16 9 O -0.55 -9.99 14.29 5.56 0.08 -9.91 16 10 N -0.61 -9.73 3.33 -170.52 -0.57 -10.29 16 11 C 0.12 1.76 6.48 -3.06 -0.02 1.74 16 12 C -0.11 -1.77 3.16 -88.77 -0.28 -2.05 16 13 H 0.08 1.34 7.99 -51.93 -0.42 0.93 16 14 C -0.13 -1.90 9.16 37.16 0.34 -1.56 16 15 C 0.18 3.25 3.14 -65.78 -0.21 3.05 16 16 H 0.06 1.22 8.03 -51.93 -0.42 0.80 16 17 N -0.71 -16.35 5.28 -51.35 -0.27 -16.62 16 18 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 22 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.07 1.21 6.38 -2.54 -0.02 1.19 16 27 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 1.06 5.95 -51.93 -0.31 0.75 16 35 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.08 7.85 -51.93 -0.41 0.68 16 38 H 0.09 1.12 6.17 -51.93 -0.32 0.80 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.95 7.77 -51.93 -0.40 0.55 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 44 H 0.39 9.53 7.71 -40.82 -0.31 9.22 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -28.72 364.28 -8.17 -36.89 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.58 Total: 7.76 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.02 Total: -3.70 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.11 Total: -52.84 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.72 -8.17 -36.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214307919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.218 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds