Wall clock time and date at job start Tue Mar 31 2020 06:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46571 * 2 1 4 4 C 1.52993 * 109.47124 * 119.99919 * 2 1 3 5 5 C 1.53011 * 109.46944 * 175.37129 * 4 2 1 6 6 H 1.08997 * 109.46894 * 56.45277 * 5 4 2 7 7 C 1.52998 * 109.46968 * 176.45143 * 5 4 2 8 8 C 1.50698 * 109.47022 * 296.45221 * 5 4 2 9 9 O 1.21277 * 119.99998 * 343.41706 * 8 5 4 10 10 N 1.34779 * 119.99817 * 163.41667 * 8 5 4 11 11 C 1.47423 * 125.64662 * 175.44130 * 10 8 5 12 12 C 1.54903 * 104.83052 * 204.09464 * 11 10 8 13 13 H 1.09005 * 111.00729 * 81.06965 * 12 11 10 14 14 C 1.53005 * 111.00523 * 204.91769 * 12 11 10 15 15 C 1.55159 * 101.58626 * 322.99308 * 12 11 10 16 16 H 1.08999 * 110.87034 * 277.06968 * 15 12 11 17 17 N 1.46491 * 110.72155 * 153.86566 * 15 12 11 18 18 C 1.36938 * 119.99906 * 160.02451 * 17 15 12 19 19 H 1.07998 * 120.00115 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99879 * 179.97438 * 18 17 15 21 21 N 1.31625 * 119.99764 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00150 * 0.27751 * 20 18 17 23 23 H 1.48496 * 109.47110 * 269.72124 * 22 20 18 24 24 H 1.48492 * 109.47031 * 29.72368 * 22 20 18 25 25 H 1.48500 * 109.46932 * 149.72116 * 22 20 18 26 26 C 1.47019 * 125.64660 * 355.40455 * 10 8 5 27 27 H 1.09005 * 109.47116 * 299.99810 * 1 2 3 28 28 H 1.08996 * 109.47352 * 60.00034 * 1 2 3 29 29 H 1.09005 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46981 * 240.00157 * 2 1 3 31 31 H 1.08997 * 109.47276 * 65.93364 * 3 2 1 32 32 H 1.09004 * 109.46908 * 185.92976 * 3 2 1 33 33 H 1.08996 * 109.47754 * 305.92983 * 3 2 1 34 34 H 1.08998 * 109.47585 * 55.37641 * 4 2 1 35 35 H 1.09000 * 109.47836 * 295.36965 * 4 2 1 36 36 H 1.09005 * 109.46954 * 175.88328 * 7 5 4 37 37 H 1.09004 * 109.47208 * 295.88365 * 7 5 4 38 38 H 1.09001 * 109.47101 * 55.88272 * 7 5 4 39 39 H 1.08997 * 110.36983 * 322.93705 * 11 10 8 40 40 H 1.09004 * 110.36704 * 85.14744 * 11 10 8 41 41 H 1.08999 * 109.46904 * 172.19852 * 14 12 11 42 42 H 1.09003 * 109.46876 * 292.19761 * 14 12 11 43 43 H 1.08994 * 109.47203 * 52.19625 * 14 12 11 44 44 H 0.96999 * 120.00330 * 340.02132 * 17 15 12 45 45 H 0.97001 * 119.99924 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.88537 * 59.55778 * 26 10 8 47 47 H 1.08997 * 109.88531 * 298.39084 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5657 -0.8228 1.1923 6 1 3.9924 0.1746 1.0864 7 6 4.0824 -1.4644 2.4815 8 6 3.9690 -1.6697 0.0129 9 8 3.1522 -2.3845 -0.5280 10 7 5.2376 -1.6327 -0.4408 11 6 5.7897 -2.4741 -1.5182 12 6 7.3140 -2.5173 -1.2459 13 1 7.5530 -3.2524 -0.4773 14 6 8.0931 -2.7992 -2.5322 15 6 7.5809 -1.0755 -0.7387 16 1 7.7042 -0.3865 -1.5742 17 7 8.7561 -1.0427 0.1354 18 6 9.4091 0.1396 0.3606 19 1 9.0576 1.0481 -0.1057 20 6 10.5224 0.1707 1.1892 21 7 11.1498 1.3073 1.4061 22 14 11.1343 -1.4017 1.9909 23 1 10.4736 -1.5746 3.3095 24 1 10.8110 -2.5598 1.1195 25 1 12.6049 -1.3205 2.1808 26 6 6.2998 -0.7460 0.0563 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.7658 1.9248 0.9383 32 1 3.1247 1.4445 -0.1062 33 1 1.5925 1.9862 -0.8321 34 1 1.6106 -1.7222 1.2917 35 1 1.7460 -0.1618 2.1373 36 1 5.1612 -1.6037 2.4109 37 1 3.8544 -0.8154 3.3271 38 1 3.5998 -2.4312 2.6250 39 1 5.3671 -3.4776 -1.4701 40 1 5.5890 -2.0249 -2.4909 41 1 9.1606 -2.6875 -2.3422 42 1 7.8878 -3.8164 -2.8658 43 1 7.7859 -2.0945 -3.3049 44 1 9.0717 -1.8586 0.5546 45 1 11.9275 1.3291 1.9855 46 1 6.4661 -0.9259 1.1184 47 1 6.0201 0.2948 -0.1062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216099738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:31 Heat of formation + Delta-G solvation = -48.522438 kcal Electronic energy + Delta-G solvation = -23569.402817 eV Core-core repulsion = 20365.464611 eV Total energy + Delta-G solvation = -3203.938206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21313 -38.11190 -36.27197 -34.22079 -33.26336 -32.15175 -31.06003 -27.91977 -27.24409 -26.73576 -26.44723 -23.99851 -22.77079 -21.14310 -20.26400 -20.17101 -18.55100 -17.60958 -17.02545 -16.02301 -15.50719 -15.14651 -14.74956 -14.37581 -14.07843 -13.64952 -13.45866 -13.29230 -13.24827 -12.89663 -12.71935 -12.58874 -12.36518 -12.29782 -12.12178 -11.93552 -11.72788 -11.59151 -11.47724 -11.39973 -11.13946 -10.83318 -10.68666 -10.64092 -10.48768 -10.42634 -10.37271 -10.05490 -9.69658 -9.50572 -9.05328 -8.35530 -7.43812 -5.88240 -3.26281 2.83611 3.21371 3.29830 3.32614 3.38970 4.48615 4.52701 4.65957 4.84426 4.88784 4.99521 5.02047 5.04583 5.24079 5.29209 5.36493 5.45329 5.47892 5.57105 5.60223 5.65644 5.69057 5.73591 5.74189 5.78320 5.80528 5.85755 5.89008 5.91538 6.00375 6.07418 6.08965 6.15441 6.19138 6.28114 6.34680 6.38282 6.44209 6.44622 6.53162 6.73943 7.77344 7.86506 8.30451 8.38164 9.07014 9.79303 9.97546 11.29399 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.004519 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.282558 B = 6193.957602 C = 6793.829191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.094 4.094 5 C -0.110 4.110 6 H 0.095 0.905 7 C -0.143 4.143 8 C 0.533 3.467 9 O -0.552 6.552 10 N -0.615 5.615 11 C 0.114 3.886 12 C -0.117 4.117 13 H 0.080 0.920 14 C -0.135 4.135 15 C 0.182 3.818 16 H 0.074 0.926 17 N -0.736 5.736 18 C -0.253 4.253 19 H 0.092 0.908 20 C 0.011 3.989 21 N -0.929 5.929 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.290 1.290 26 C 0.073 3.927 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.075 0.925 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.834 -4.994 -2.446 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.207 4.207 4 C -0.132 4.132 5 C -0.131 4.131 6 H 0.113 0.887 7 C -0.201 4.201 8 C 0.322 3.678 9 O -0.430 6.430 10 N -0.348 5.348 11 C -0.009 4.009 12 C -0.137 4.137 13 H 0.099 0.901 14 C -0.193 4.193 15 C 0.071 3.929 16 H 0.092 0.908 17 N -0.378 5.378 18 C -0.382 4.382 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C -0.053 4.053 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.220 -5.104 -2.696 17.216 hybrid contribution 0.669 -0.908 0.751 1.355 sum -15.551 -6.013 -1.945 16.786 Atomic orbital electron populations 1.21783 0.95438 1.01527 1.01215 1.21184 0.95628 0.95945 0.99320 1.21916 1.01143 0.96140 1.01505 1.21499 0.92591 1.01353 0.97717 1.21367 0.97849 1.00024 0.93876 0.88691 1.21748 1.01904 1.00910 0.95516 1.20321 0.80332 0.82678 0.84431 1.90637 1.50031 1.42669 1.59691 1.48573 1.09925 1.39309 1.36990 1.22217 0.92858 0.95265 0.90522 1.22655 0.93316 0.98938 0.98765 0.90114 1.21625 1.00954 1.00720 0.95952 1.21213 0.85639 0.93725 0.92361 0.90810 1.42706 1.30614 1.08250 1.56215 1.19060 1.07659 0.87044 1.24469 0.89001 1.24667 0.97818 0.96326 0.99739 1.69698 1.22287 1.24236 1.41327 0.86599 0.78425 0.84031 0.79761 1.20993 1.20220 1.21626 1.23267 0.88373 0.93170 1.00466 0.93037 0.93024 0.92764 0.90322 0.92752 0.92663 0.92934 0.91045 0.91491 0.91591 0.91440 0.92329 0.91089 0.91619 0.91478 0.93065 0.92505 0.80268 0.92893 0.90699 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.16 0.34 -1.07 16 2 C -0.10 -1.18 2.72 -90.62 -0.25 -1.43 16 3 C -0.15 -1.59 8.79 37.16 0.33 -1.26 16 4 C -0.09 -1.08 3.82 -26.73 -0.10 -1.18 16 5 C -0.11 -1.40 1.98 -91.77 -0.18 -1.58 16 6 H 0.10 1.18 6.04 -51.93 -0.31 0.87 16 7 C -0.14 -1.70 9.15 37.16 0.34 -1.36 16 8 C 0.53 8.23 6.38 -10.99 -0.07 8.16 16 9 O -0.55 -9.84 15.01 5.56 0.08 -9.76 16 10 N -0.61 -9.35 3.33 -170.53 -0.57 -9.92 16 11 C 0.11 1.62 6.36 -2.53 -0.02 1.61 16 12 C -0.12 -1.70 3.25 -88.47 -0.29 -1.99 16 13 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 14 C -0.13 -1.75 9.31 37.16 0.35 -1.41 16 15 C 0.18 3.17 3.06 -66.10 -0.20 2.97 16 16 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 17 N -0.74 -15.83 4.98 -51.65 -0.26 -16.09 16 18 C -0.25 -6.59 10.46 -15.06 -0.16 -6.75 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 20 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 21 N -0.93 -27.85 13.97 55.49 0.78 -27.08 16 22 Si 0.88 20.96 27.74 -169.99 -4.72 16.24 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.07 1.17 5.90 -3.06 -0.02 1.16 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.11 6.35 -51.93 -0.33 0.78 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.62 6.77 -51.93 -0.35 0.27 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.86 6.43 -51.93 -0.33 0.52 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.07 0.89 7.99 -51.93 -0.41 0.47 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.36 7.79 5.57 -40.82 -0.23 7.56 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 1.27 6.41 -51.93 -0.33 0.94 16 47 H 0.06 0.99 8.06 -51.93 -0.42 0.58 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -29.76 363.01 -7.85 -37.61 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.62 Total: 7.45 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.02 Total: -3.94 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.05 Total: -53.08 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.72 Total: 16.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.76 -7.85 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216099738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.907 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds