Wall clock time and date at job start Tue Mar 31 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47207 * 2 1 4 4 C 1.52999 * 109.46901 * 119.99975 * 2 1 3 5 5 C 1.53004 * 109.46995 * 175.00286 * 4 2 1 6 6 H 1.08996 * 109.47624 * 54.99707 * 5 4 2 7 7 C 1.53002 * 109.47039 * 294.99668 * 5 4 2 8 8 C 1.50704 * 109.46964 * 174.99975 * 5 4 2 9 9 O 1.21280 * 119.99950 * 26.12787 * 8 5 4 10 10 N 1.34781 * 119.99768 * 206.12441 * 8 5 4 11 11 C 1.47425 * 125.64583 * 174.91433 * 10 8 5 12 12 C 1.54909 * 104.82816 * 204.09431 * 11 10 8 13 13 H 1.08996 * 111.00465 * 81.06680 * 12 11 10 14 14 C 1.53001 * 111.00099 * 204.91711 * 12 11 10 15 15 C 1.55155 * 101.58205 * 322.99026 * 12 11 10 16 16 H 1.08998 * 110.87345 * 277.07018 * 15 12 11 17 17 N 1.46497 * 110.71858 * 153.86959 * 15 12 11 18 18 C 1.36938 * 120.00392 * 160.02440 * 17 15 12 19 19 H 1.08000 * 119.99732 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00366 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99733 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00025 * 180.27428 * 20 18 17 23 23 H 1.48500 * 109.47330 * 179.72840 * 22 20 18 24 24 H 1.48503 * 109.47397 * 299.72787 * 22 20 18 25 25 H 1.48503 * 109.47343 * 59.73062 * 22 20 18 26 26 C 1.47023 * 125.64857 * 354.87520 * 10 8 5 27 27 H 1.08998 * 109.47539 * 300.00156 * 1 2 3 28 28 H 1.09004 * 109.47223 * 60.00150 * 1 2 3 29 29 H 1.08999 * 109.47151 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47539 * 239.99844 * 2 1 3 31 31 H 1.09003 * 109.47423 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47377 * 300.00279 * 3 2 1 33 33 H 1.09007 * 109.47291 * 59.99604 * 3 2 1 34 34 H 1.09003 * 109.47323 * 55.00190 * 4 2 1 35 35 H 1.09005 * 109.47460 * 294.99882 * 4 2 1 36 36 H 1.08994 * 109.47632 * 186.10968 * 7 5 4 37 37 H 1.08998 * 109.47214 * 306.11504 * 7 5 4 38 38 H 1.09003 * 109.47234 * 66.10904 * 7 5 4 39 39 H 1.08995 * 110.36441 * 322.93246 * 11 10 8 40 40 H 1.09000 * 110.36722 * 85.14669 * 11 10 8 41 41 H 1.09001 * 109.46993 * 172.19592 * 14 12 11 42 42 H 1.08996 * 109.47242 * 292.19796 * 14 12 11 43 43 H 1.08994 * 109.47231 * 52.19684 * 14 12 11 44 44 H 0.97001 * 120.00012 * 340.01986 * 17 15 12 45 45 H 0.96999 * 119.99512 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.88286 * 59.55565 * 26 10 8 47 47 H 1.09002 * 110.01135 * 298.46426 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9954 0.1611 1.0528 7 6 3.9650 -1.7252 0.0128 8 6 4.0773 -1.4302 2.4724 9 8 3.3622 -2.1555 3.1308 10 7 5.3302 -1.1601 2.8891 11 6 5.9210 -1.5896 4.1697 12 6 7.0522 -0.5682 4.4469 13 1 6.6527 0.3496 4.8782 14 6 8.1282 -1.1734 5.3507 15 6 7.6026 -0.3176 3.0180 16 1 8.3123 -1.0943 2.7335 17 7 8.2220 1.0068 2.9261 18 6 9.1122 1.2782 1.9216 19 1 9.3579 0.5157 1.1973 20 6 9.6988 2.5332 1.8342 21 7 9.3997 3.4623 2.7173 22 14 10.9073 2.9057 0.4594 23 1 11.3827 4.3069 0.5844 24 1 12.0647 1.9801 0.5534 25 1 10.2352 2.7263 -0.8526 26 6 6.3344 -0.3891 2.1416 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 5.0419 -1.8918 0.0331 37 1 3.4478 -2.6815 0.0912 38 1 3.6902 -1.2393 -0.9235 39 1 5.1744 -1.5534 4.9630 40 1 6.3300 -2.5961 4.0803 41 1 8.9740 -0.4890 5.4171 42 1 7.7157 -1.3388 6.3459 43 1 8.4614 -2.1233 4.9330 44 1 8.0016 1.6916 3.5769 45 1 9.8093 4.3394 2.6560 46 1 5.9607 0.6162 1.9475 47 1 6.5624 -0.8880 1.1997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216099739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:34 Heat of formation + Delta-G solvation = -53.294543 kcal Electronic energy + Delta-G solvation = -23304.682872 eV Core-core repulsion = 20100.537733 eV Total energy + Delta-G solvation = -3204.145140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06082 -37.97358 -36.65112 -34.07564 -32.99257 -32.01290 -30.71480 -27.51405 -27.23906 -26.74553 -26.46567 -24.12400 -23.12902 -21.34160 -19.98242 -19.72971 -18.57787 -17.15339 -16.97949 -16.01757 -15.37549 -15.18770 -14.74895 -14.29686 -13.96439 -13.65799 -13.57059 -13.38207 -13.04833 -13.00977 -12.67788 -12.47275 -12.35252 -12.31188 -11.95406 -11.92646 -11.59458 -11.45706 -11.27350 -11.15609 -11.01094 -10.77136 -10.72895 -10.62769 -10.56026 -10.46663 -10.29776 -9.98049 -9.77789 -9.45509 -9.01261 -8.28978 -7.12134 -5.87680 -3.18639 2.88058 3.27440 3.37581 3.42917 3.43459 4.48078 4.58622 4.70044 4.80576 4.91247 5.07727 5.12368 5.15550 5.22751 5.27741 5.41720 5.54063 5.54166 5.57762 5.62389 5.67647 5.74169 5.77483 5.82762 5.83186 5.87040 5.90539 5.95832 5.98760 6.04362 6.09966 6.13921 6.20694 6.25154 6.34767 6.37191 6.39886 6.48394 6.56823 6.63901 6.86102 7.59898 7.85373 8.29597 8.43120 9.41747 9.95577 10.30635 11.34161 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.004725 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.070982 B = 5924.372701 C = 7305.489670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.110 4.110 6 H 0.096 0.904 7 C -0.140 4.140 8 C 0.531 3.469 9 O -0.557 6.557 10 N -0.613 5.613 11 C 0.113 3.887 12 C -0.113 4.113 13 H 0.083 0.917 14 C -0.133 4.133 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.712 5.712 18 C -0.249 4.249 19 H 0.071 0.929 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.073 3.927 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.073 0.927 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.955 -8.082 -2.755 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.132 4.132 5 C -0.131 4.131 6 H 0.114 0.886 7 C -0.197 4.197 8 C 0.320 3.680 9 O -0.436 6.436 10 N -0.346 5.346 11 C -0.009 4.009 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.191 4.191 15 C 0.065 3.935 16 H 0.083 0.917 17 N -0.352 5.352 18 C -0.380 4.380 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.053 4.053 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.256 -8.432 -2.576 15.098 hybrid contribution 0.674 0.628 -0.622 1.112 sum -11.582 -7.804 -3.198 14.327 Atomic orbital electron populations 1.21824 0.95325 1.01579 1.01603 1.21176 0.95584 0.96495 0.98438 1.21927 1.01584 0.95780 1.01649 1.21475 0.92628 1.01312 0.97757 1.21329 0.97529 1.01073 0.93133 0.88620 1.21739 1.01846 0.99345 0.96810 1.20372 0.80031 0.80645 0.86968 1.90640 1.56673 1.38227 1.58024 1.48586 1.12167 1.53730 1.20131 1.22238 0.95226 0.97644 0.85839 1.22614 0.95049 0.98282 0.97375 0.89858 1.21608 0.98587 1.00786 0.98121 1.21244 0.91133 0.90325 0.90838 0.91661 1.42351 1.49988 1.08775 1.34054 1.19190 1.17057 0.96687 1.05077 0.91054 1.24750 1.00485 0.96276 0.98828 1.69650 1.46787 1.04396 1.36823 0.86281 0.81097 0.77164 0.81693 1.21648 1.21155 1.21153 1.23332 0.90283 0.95483 0.96190 0.92747 0.92832 0.92787 0.90898 0.92129 0.92845 0.92681 0.91060 0.91776 0.92121 0.92195 0.91345 0.91176 0.91818 0.91334 0.93186 0.92859 0.77868 0.93284 0.90876 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 2 C -0.10 -0.99 2.78 -90.62 -0.25 -1.24 16 3 C -0.15 -1.57 8.95 37.15 0.33 -1.23 16 4 C -0.09 -1.14 3.61 -26.73 -0.10 -1.23 16 5 C -0.11 -1.45 2.07 -91.77 -0.19 -1.64 16 6 H 0.10 1.28 5.44 -51.93 -0.28 1.00 16 7 C -0.14 -1.62 8.78 37.16 0.33 -1.29 16 8 C 0.53 8.70 6.94 -10.98 -0.08 8.63 16 9 O -0.56 -10.63 16.51 5.56 0.09 -10.54 16 10 N -0.61 -9.92 3.33 -170.52 -0.57 -10.49 16 11 C 0.11 1.73 6.36 -2.53 -0.02 1.71 16 12 C -0.11 -1.78 3.25 -88.47 -0.29 -2.07 16 13 H 0.08 1.39 8.00 -51.93 -0.42 0.98 16 14 C -0.13 -1.87 9.31 37.16 0.35 -1.52 16 15 C 0.18 3.24 3.06 -66.10 -0.20 3.04 16 16 H 0.07 1.21 8.02 -51.93 -0.42 0.80 16 17 N -0.71 -16.41 5.18 -51.66 -0.27 -16.67 16 18 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 21 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 22 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.07 1.24 6.06 -3.07 -0.02 1.22 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.69 6.48 -51.93 -0.34 0.36 16 31 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.73 7.25 -51.93 -0.38 0.35 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.67 6.76 -51.93 -0.35 0.32 16 39 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 40 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.39 9.61 7.71 -40.82 -0.31 9.29 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.07 1.34 7.57 -51.93 -0.39 0.95 16 47 H 0.06 0.95 7.25 -51.93 -0.38 0.58 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -29.12 367.31 -8.16 -37.29 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.62 Total: 8.00 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.04 Total: -3.45 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.11 Total: -53.14 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.12 -8.16 -37.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216099739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.008 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds