Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48445 * 2 1 4 4 C 1.53086 * 109.48363 * 239.97373 * 2 1 3 5 5 C 1.53177 * 109.16549 * 297.62701 * 4 2 1 6 6 N 1.46893 * 109.54617 * 183.15074 * 5 4 2 7 7 C 1.46958 * 111.00212 * 303.79955 * 6 5 4 8 8 C 1.53048 * 109.36880 * 176.81218 * 7 6 5 9 9 N 1.46956 * 109.36571 * 58.39829 * 8 7 6 10 10 C 1.46893 * 111.00179 * 176.81382 * 9 8 7 11 11 C 1.50708 * 109.47077 * 293.80137 * 10 9 8 12 12 H 1.07991 * 119.99974 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99815 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00034 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99829 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47027 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46910 * 120.00068 * 15 13 11 18 18 H 1.48501 * 109.47089 * 240.00211 * 15 13 11 19 19 C 1.46958 * 110.87994 * 300.68533 * 9 8 7 20 20 C 1.46956 * 111.00363 * 180.02562 * 6 5 4 21 21 C 1.53182 * 109.03534 * 303.01770 * 5 4 2 22 22 C 1.53096 * 109.16236 * 56.97977 * 21 5 4 23 23 H 1.09002 * 109.48208 * 62.38372 * 22 21 5 24 24 C 1.52997 * 109.48007 * 182.41171 * 22 21 5 25 25 O 1.42904 * 109.47985 * 120.03031 * 2 1 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.02618 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.02599 * 1 2 3 29 29 H 1.09005 * 109.52446 * 57.53092 * 4 2 1 30 30 H 1.09004 * 109.52775 * 177.71655 * 4 2 1 31 31 H 1.09007 * 109.54274 * 62.88413 * 5 4 2 32 32 H 1.09003 * 109.48980 * 296.77800 * 7 6 5 33 33 H 1.09001 * 109.48654 * 56.84446 * 7 6 5 34 34 H 1.09000 * 109.48643 * 298.43497 * 8 7 6 35 35 H 1.08994 * 109.49169 * 178.36746 * 8 7 6 36 36 H 1.08999 * 109.47317 * 53.80445 * 10 9 8 37 37 H 1.09005 * 109.47444 * 173.80497 * 10 9 8 38 38 H 0.97006 * 119.99793 * 179.97438 * 14 13 11 39 39 H 1.08994 * 109.48821 * 299.34482 * 19 9 8 40 40 H 1.09001 * 109.48654 * 179.28423 * 19 9 8 41 41 H 1.09007 * 109.48794 * 303.15554 * 20 6 5 42 42 H 1.09001 * 109.48808 * 63.19252 * 20 6 5 43 43 H 1.08993 * 109.52057 * 176.88334 * 21 5 4 44 44 H 1.08999 * 109.51974 * 297.01216 * 21 5 4 45 45 H 1.08995 * 109.47425 * 59.99623 * 24 22 21 46 46 H 1.08997 * 109.46932 * 180.02562 * 24 22 21 47 47 H 1.09007 * 109.46482 * 299.99270 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 1.5758 -2.1813 -1.2123 6 7 2.1240 -2.9014 -2.3692 7 6 1.7454 -2.2428 -3.6273 8 6 2.4000 -2.9755 -4.8007 9 7 1.9731 -4.3817 -4.7965 10 6 2.5214 -5.1018 -5.9535 11 6 1.9180 -4.5511 -7.2199 12 1 1.1989 -3.7470 -7.1702 13 6 2.2841 -5.0740 -8.4421 14 7 3.1595 -6.0537 -8.5026 15 14 1.5357 -4.3920 -10.0118 16 1 0.5847 -3.3026 -9.6741 17 1 2.6133 -3.8558 -10.8816 18 1 0.8146 -5.4750 -10.7276 19 6 2.3517 -5.0402 -3.5385 20 6 1.6966 -4.3074 -2.3654 21 6 2.0765 -2.8322 0.0808 22 6 1.5645 -2.0285 1.2790 23 1 0.4750 -2.0552 1.2958 24 6 2.1099 -2.6374 2.5723 25 8 2.0065 -0.6742 1.1664 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5134 -0.8902 28 1 -0.3634 0.5143 0.8898 29 1 1.6421 -0.2356 -2.1399 30 1 3.1298 -0.6873 -1.2710 31 1 0.4867 -2.2179 -1.2409 32 1 0.6616 -2.2705 -3.7404 33 1 2.0834 -1.2067 -3.6113 34 1 3.4843 -2.9244 -4.7020 35 1 2.0973 -2.5064 -5.7368 36 1 3.6035 -4.9744 -5.9813 37 1 2.2824 -6.1619 -5.8683 38 1 3.4168 -6.4218 -9.3624 39 1 3.4355 -5.0126 -3.4254 40 1 2.0137 -6.0764 -3.5544 41 1 1.9990 -4.7769 -1.4292 42 1 0.6122 -4.3581 -2.4639 43 1 1.7037 -3.8546 0.1419 44 1 3.1665 -2.8410 0.0858 45 1 3.1994 -2.6102 2.5555 46 1 1.7449 -2.0653 3.4253 47 1 1.7734 -3.6707 2.6575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257096575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -42.300847 kcal Electronic energy + Delta-G solvation = -23572.320090 eV Core-core repulsion = 20368.651673 eV Total energy + Delta-G solvation = -3203.668417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37514 -38.39507 -35.44738 -33.61682 -32.83829 -31.73301 -30.52553 -29.38589 -27.31404 -26.84834 -24.90893 -23.39046 -22.36988 -21.78508 -21.18987 -19.40972 -19.18875 -16.65467 -16.48047 -16.31020 -15.59642 -15.03719 -14.85304 -14.57711 -14.27047 -14.15948 -13.76379 -13.52633 -13.38435 -13.12116 -12.87470 -12.74571 -12.35317 -12.18855 -12.12816 -11.88372 -11.60634 -11.42080 -11.20341 -11.13468 -11.01582 -10.81872 -10.69662 -10.57433 -10.30586 -10.17999 -10.11564 -9.71796 -9.57337 -9.15176 -8.44012 -8.10423 -7.21384 -6.02556 -4.03909 3.30559 3.37878 3.42508 3.56377 3.96321 4.42393 4.49901 4.62523 4.76491 4.88959 4.91922 4.98703 5.11322 5.13536 5.19519 5.29096 5.32850 5.34333 5.39492 5.53615 5.57204 5.61134 5.70187 5.73178 5.78106 5.82376 5.85873 5.90511 5.92231 6.01534 6.04862 6.08925 6.23355 6.26857 6.45475 6.61690 6.70050 7.11455 7.20982 7.28315 7.36864 7.39895 7.80773 8.09928 8.22089 8.56167 9.03979 9.60340 11.08381 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.003460 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.967874 B = 8089.700377 C = 8649.574285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.102 0.898 4 C -0.144 4.144 5 C 0.085 3.915 6 N -0.533 5.533 7 C 0.056 3.944 8 C 0.068 3.932 9 N -0.538 5.538 10 C 0.193 3.807 11 C -0.506 4.506 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.057 3.943 20 C 0.059 3.941 21 C -0.142 4.142 22 C 0.085 3.915 23 H 0.058 0.942 24 C -0.143 4.143 25 O -0.376 6.376 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.085 0.915 36 H -0.009 1.009 37 H 0.029 0.971 38 H 0.260 0.740 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.744 9.505 19.766 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.032 3.968 3 H 0.120 0.880 4 C -0.182 4.182 5 C -0.024 4.024 6 N -0.258 5.258 7 C -0.072 4.072 8 C -0.061 4.061 9 N -0.264 5.264 10 C 0.068 3.932 11 C -0.545 4.545 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.072 4.072 20 C -0.069 4.069 21 C -0.180 4.180 22 C 0.027 3.973 23 H 0.076 0.924 24 C -0.201 4.201 25 O -0.295 6.295 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.009 0.991 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.534 9.458 19.756 22.186 hybrid contribution -0.511 0.054 -1.265 1.365 sum -4.046 9.512 18.491 21.184 Atomic orbital electron populations 1.22478 0.96611 1.02767 1.02624 1.22154 0.93282 0.96330 0.85021 0.87999 1.22315 1.02777 0.95037 0.98086 1.21624 0.96410 0.93422 0.90922 1.62218 1.59432 1.02312 1.01845 1.22289 0.98338 0.97621 0.88946 1.21982 0.96881 0.90227 0.96976 1.62282 1.60031 1.01725 1.02343 1.19705 0.93031 0.93898 0.86569 1.21193 1.24328 1.18809 0.90151 0.91903 1.24997 0.95265 0.95161 0.99241 1.69974 1.32699 1.25913 1.25217 0.86453 0.78987 0.78912 0.83135 1.19690 1.21106 1.21026 1.22055 0.97521 0.97561 0.90078 1.22190 0.97938 0.88258 0.98470 1.22322 1.02890 0.99358 0.93448 1.22082 0.97867 0.82249 0.95117 0.92409 1.21750 1.02193 1.00240 0.95888 1.87960 1.73812 1.24554 1.43178 0.91933 0.91425 0.91962 0.90652 0.90108 0.94202 0.94545 0.90929 0.95359 0.89636 0.99073 0.95267 0.92990 0.95169 0.91115 0.91060 0.94525 0.90938 0.90128 0.91733 0.92027 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 8.65 37.16 0.32 -1.30 16 2 C 0.09 0.88 3.91 -26.69 -0.10 0.78 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -1.58 4.46 -26.60 -0.12 -1.70 16 5 C 0.08 1.02 1.72 -67.53 -0.12 0.91 16 6 N -0.53 -7.91 4.58 -226.27 -1.04 -8.95 16 7 C 0.06 0.89 5.23 -3.77 -0.02 0.87 16 8 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 9 N -0.54 -11.85 4.70 -235.92 -1.11 -12.96 16 10 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 11 C -0.51 -14.29 8.47 -34.44 -0.29 -14.59 16 12 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 15 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 20 C 0.06 0.91 5.33 -3.77 -0.02 0.89 16 21 C -0.14 -1.55 4.39 -26.59 -0.12 -1.66 16 22 C 0.08 0.84 2.94 -26.68 -0.08 0.76 16 23 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 24 C -0.14 -1.18 9.56 37.16 0.36 -0.83 16 25 O -0.38 -4.22 10.24 -35.23 -0.36 -4.58 16 26 H 0.06 0.57 4.97 -51.93 -0.26 0.31 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.80 6.48 -51.93 -0.34 0.46 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.50 6.62 -51.93 -0.34 0.15 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.02 6.14 -51.93 -0.32 0.70 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 36 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 37 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 41 H 0.07 0.94 6.23 -51.93 -0.32 0.62 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.75 6.53 -51.93 -0.34 0.41 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -30.23 347.00 -10.35 -40.59 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -8.44 Total: -2.89 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.35 Total: -6.95 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -1.41 Total: -48.06 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.36 Total: -4.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.23 -10.35 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257096575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.714 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds