Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.49090 * 2 1 4 4 C 1.53082 * 109.48212 * 120.03282 * 2 1 3 5 5 C 1.53184 * 109.16509 * 62.37544 * 4 2 1 6 6 N 1.46895 * 109.54584 * 176.84925 * 5 4 2 7 7 C 1.46951 * 111.00120 * 179.97438 * 6 5 4 8 8 C 1.53050 * 109.36526 * 183.18532 * 7 6 5 9 9 N 1.46958 * 109.36635 * 301.59960 * 8 7 6 10 10 C 1.46904 * 110.99799 * 183.18684 * 9 8 7 11 11 C 1.50706 * 109.46676 * 170.00038 * 10 9 8 12 12 H 1.08005 * 120.00138 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99722 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00073 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46845 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 119.99815 * 15 13 11 18 18 H 1.48498 * 109.47295 * 240.00422 * 15 13 11 19 19 C 1.46951 * 110.87971 * 59.31881 * 9 8 7 20 20 C 1.46958 * 110.99921 * 303.79499 * 6 5 4 21 21 C 1.53170 * 109.03589 * 56.97450 * 5 4 2 22 22 C 1.53089 * 109.16954 * 303.02330 * 21 5 4 23 23 H 1.08995 * 109.48646 * 297.62419 * 22 21 5 24 24 C 1.52994 * 109.48123 * 177.58925 * 22 21 5 25 25 O 1.42906 * 109.47661 * 239.97771 * 2 1 3 26 26 H 1.08995 * 109.46958 * 299.96864 * 1 2 3 27 27 H 1.09000 * 109.47235 * 59.96392 * 1 2 3 28 28 H 1.08995 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.52279 * 302.46705 * 4 2 1 30 30 H 1.09004 * 109.52233 * 182.27599 * 4 2 1 31 31 H 1.09004 * 109.53916 * 297.02443 * 5 4 2 32 32 H 1.09000 * 109.48790 * 63.22298 * 7 6 5 33 33 H 1.09001 * 109.49102 * 303.15547 * 7 6 5 34 34 H 1.09000 * 109.48942 * 181.62976 * 8 7 6 35 35 H 1.09008 * 109.49017 * 61.57062 * 8 7 6 36 36 H 1.08996 * 109.47230 * 50.00586 * 10 9 8 37 37 H 1.08994 * 109.47304 * 290.00095 * 10 9 8 38 38 H 0.97000 * 119.99651 * 0.02562 * 14 13 11 39 39 H 1.09012 * 109.48789 * 60.64818 * 19 9 8 40 40 H 1.09001 * 109.49102 * 180.71169 * 19 9 8 41 41 H 1.08991 * 109.48927 * 296.78197 * 20 6 5 42 42 H 1.09009 * 109.48916 * 56.84602 * 20 6 5 43 43 H 1.09007 * 109.51992 * 62.93635 * 21 5 4 44 44 H 1.08998 * 109.52208 * 183.11403 * 21 5 4 45 45 H 1.08997 * 109.47640 * 300.06059 * 24 22 21 46 46 H 1.09003 * 109.47134 * 60.06010 * 24 22 21 47 47 H 1.09000 * 109.46861 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 1.2494 5 6 1.5757 -2.1815 1.2119 6 7 2.1240 -2.9017 2.3689 7 6 1.6966 -4.3077 2.3648 8 6 2.2214 -5.0013 3.6241 9 7 3.6869 -4.8996 3.6616 10 6 4.2352 -5.6199 4.8186 11 6 5.7347 -5.7040 4.6934 12 1 6.2308 -5.2658 3.8400 13 6 6.4731 -6.3404 5.6684 14 7 5.8690 -6.8744 6.7074 15 14 8.3317 -6.4454 5.5129 16 1 8.7625 -5.7718 4.2615 17 1 8.9645 -5.7760 6.6778 18 1 8.7456 -7.8710 5.4761 19 6 4.1144 -3.4936 3.6657 20 6 3.5895 -2.7995 2.4067 21 6 2.0763 -2.8322 -0.0812 22 6 1.5644 -2.0284 -1.2793 23 1 0.4749 -2.0549 -1.2961 24 6 2.1097 -2.6371 -2.5726 25 8 2.0065 -0.6741 -1.1665 26 1 -0.3633 0.5133 0.8902 27 1 -0.3634 0.5144 -0.8897 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6421 -0.2358 2.1398 30 1 3.1298 -0.6875 1.2707 31 1 0.4867 -2.2181 1.2422 32 1 2.0958 -4.8066 1.4817 33 1 0.6078 -4.3568 2.3495 34 1 1.9300 -6.0516 3.6090 35 1 1.8006 -4.5196 4.5068 36 1 3.8164 -6.6256 4.8522 37 1 3.9763 -5.0877 5.7339 38 1 4.9038 -6.8209 6.7875 39 1 3.7151 -2.9947 4.5489 40 1 5.2032 -3.4445 3.6810 41 1 4.0105 -3.2809 1.5241 42 1 3.8805 -1.7491 2.4220 43 1 3.1664 -2.8400 -0.0867 44 1 1.7036 -3.8546 -0.1424 45 1 3.1993 -2.6110 -2.5554 46 1 1.7725 -3.6701 -2.6585 47 1 1.7455 -2.0644 -3.4255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257096577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -44.178990 kcal Electronic energy + Delta-G solvation = -23782.109776 eV Core-core repulsion = 20578.359916 eV Total energy + Delta-G solvation = -3203.749860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54300 -38.44713 -35.61659 -33.60628 -33.01802 -31.66786 -30.57408 -29.25734 -27.08114 -26.83562 -24.70144 -23.24754 -22.99285 -21.92994 -21.34582 -19.77269 -18.62902 -16.82360 -16.55050 -16.50874 -15.66826 -15.20333 -14.61318 -14.45255 -14.33987 -14.09107 -13.96935 -13.70876 -13.56841 -12.97370 -12.85174 -12.82045 -12.32417 -12.20100 -12.12969 -11.95144 -11.69278 -11.39414 -11.21919 -11.14527 -11.02461 -10.88629 -10.70129 -10.62511 -10.37531 -10.19728 -10.10289 -9.89197 -9.60770 -8.66402 -8.36464 -8.09745 -7.31528 -6.36333 -4.05046 3.44798 3.48778 3.56291 3.62579 3.97608 4.50107 4.51985 4.56055 4.71256 4.81512 4.89539 4.92507 5.04468 5.10815 5.20129 5.28391 5.32900 5.33698 5.39423 5.42924 5.54777 5.60949 5.63737 5.68934 5.78284 5.79470 5.79743 5.87716 5.91634 5.92957 6.00654 6.07452 6.11525 6.26859 6.34987 6.53518 6.62920 6.98514 7.08375 7.11216 7.21780 7.27449 7.80806 8.00360 8.33105 8.59851 8.88055 9.65936 11.03001 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.003664 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.841253 B = 7640.173097 C = 7872.847812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.089 3.911 3 H 0.102 0.898 4 C -0.145 4.145 5 C 0.085 3.915 6 N -0.531 5.531 7 C 0.060 3.940 8 C 0.055 3.945 9 N -0.531 5.531 10 C 0.183 3.817 11 C -0.587 4.587 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 1.077 2.923 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.069 3.931 20 C 0.053 3.947 21 C -0.184 4.184 22 C 0.089 3.911 23 H 0.059 0.941 24 C -0.145 4.145 25 O -0.376 6.376 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.019 0.981 37 H -0.019 1.019 38 H 0.267 0.733 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 12.227 -15.083 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.031 3.969 3 H 0.120 0.880 4 C -0.183 4.183 5 C -0.024 4.024 6 N -0.254 5.254 7 C -0.068 4.068 8 C -0.074 4.074 9 N -0.256 5.256 10 C 0.057 3.943 11 C -0.626 4.626 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.553 5.553 15 Si 0.906 3.094 16 H -0.215 1.215 17 H -0.214 1.214 18 H -0.213 1.213 19 C -0.060 4.060 20 C -0.075 4.075 21 C -0.223 4.223 22 C 0.031 3.969 23 H 0.076 0.924 24 C -0.202 4.202 25 O -0.295 6.295 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.037 0.963 37 H -0.002 1.002 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.139 11.725 -14.447 21.189 hybrid contribution -1.655 0.341 -0.427 1.743 sum -11.795 12.066 -14.873 22.493 Atomic orbital electron populations 1.22460 0.96536 1.02715 1.02606 1.22153 0.93373 0.96326 0.85014 0.88016 1.22333 1.02336 0.95246 0.98382 1.21756 0.99251 0.93335 0.88014 1.62421 1.10628 1.12985 1.39403 1.22146 0.98866 0.87570 0.98241 1.22091 0.90306 0.99212 0.95800 1.62190 1.06267 1.11764 1.45381 1.19811 0.96277 0.92513 0.85676 1.22018 0.91063 1.39911 1.09589 0.92467 1.25850 1.06962 0.93455 0.92731 1.70735 1.11861 1.43110 1.29546 0.83428 0.74072 0.76524 0.75403 1.21458 1.21435 1.21349 1.21996 1.00929 0.88288 0.94797 1.22334 0.86651 0.99910 0.98620 1.22939 1.02999 1.00300 0.96098 1.22009 0.97761 0.82149 0.95013 0.92358 1.21765 1.02231 1.00240 0.95965 1.87971 1.73862 1.24561 1.43147 0.91364 0.92022 0.91940 0.90160 0.90528 0.90142 0.93938 0.91354 0.91183 0.95276 0.96282 1.00172 0.92273 0.95518 0.89530 0.94020 0.90778 0.90467 0.90771 0.91787 0.91201 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 8.65 37.16 0.32 -1.18 16 2 C 0.09 0.86 3.91 -26.69 -0.10 0.75 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.15 -1.56 4.67 -26.59 -0.12 -1.68 16 5 C 0.09 1.00 2.08 -67.53 -0.14 0.86 16 6 N -0.53 -7.79 4.74 -226.28 -1.07 -8.86 16 7 C 0.06 0.91 5.14 -3.77 -0.02 0.89 16 8 C 0.05 1.02 5.61 -3.77 -0.02 1.00 16 9 N -0.53 -11.77 4.70 -235.90 -1.11 -12.87 16 10 C 0.18 4.83 4.03 -4.97 -0.02 4.81 16 11 C -0.59 -16.83 8.47 -34.44 -0.29 -17.12 16 12 H 0.06 1.65 7.13 -52.48 -0.37 1.27 16 13 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 14 N -0.92 -28.18 13.65 55.43 0.76 -27.42 16 15 Si 1.08 25.62 29.90 -169.99 -5.08 20.54 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 20 C 0.05 0.85 4.84 -3.77 -0.02 0.83 16 21 C -0.18 -2.12 3.98 -26.60 -0.11 -2.22 16 22 C 0.09 0.91 2.94 -26.69 -0.08 0.83 16 23 H 0.06 0.55 6.34 -51.93 -0.33 0.22 16 24 C -0.14 -1.33 9.56 37.15 0.36 -0.97 16 25 O -0.38 -4.31 10.24 -35.23 -0.36 -4.67 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 4.98 -51.93 -0.26 0.26 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.90 6.12 -51.93 -0.32 0.59 16 31 H 0.08 0.90 6.62 -51.93 -0.34 0.56 16 32 H 0.04 0.66 6.57 -51.93 -0.34 0.32 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.02 0.53 7.89 -51.93 -0.41 0.12 16 37 H -0.02 -0.54 7.99 -51.93 -0.41 -0.96 16 38 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 39 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.09 1.89 6.79 -51.93 -0.35 1.53 16 41 H 0.04 0.71 6.49 -51.93 -0.34 0.37 16 42 H 0.07 1.08 6.00 -51.92 -0.31 0.77 16 43 H 0.08 1.02 6.42 -51.92 -0.33 0.69 16 44 H 0.07 0.85 6.68 -51.93 -0.35 0.50 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -30.95 342.06 -10.29 -41.24 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.21 Total: -1.56 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.37 Total: -11.54 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -1.42 Total: -49.15 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.36 Total: -4.67 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.95 -10.29 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257096577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.939 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds